Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 0.0e+00 1604.0 828 100.0
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 0.0e+00 1505.3 884 89.7
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 6.4e-306 1053.9 868 67.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 9.2e-305 1050.0 871 68.2
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.2e-304 1049.7 862 67.6
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.0e-303 1046.6 860 68.7
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 3.8e-298 1028.1 862 67.1
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 9.3e-297 1023.5 865 66.1
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 4.6e-296 1021.1 732 75.0
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 4.3e-294 1014.6 862 67.2
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 4.3e-294 1014.6 876 66.2
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 6.2e-293 1010.7 835 68.0
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 2.0e-291 1005.7 862 66.1
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 2.2e-290 1002.3 857 65.9
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 1.4e-289 999.6 974 61.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 2.4e-289 998.8 833 67.1
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 9.3e-289 996.9 861 65.2
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.5e-288 995.0 861 64.8
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-286 989.9 862 64.8
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 1.1e-286 989.9 839 66.3
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.6e-285 986.1 864 65.5
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 2.8e-285 985.3 859 65.7
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.8e-284 982.6 859 65.8
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 2.4e-284 982.2 854 65.1
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 4.0e-284 981.5 868 64.4
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.2e-283 979.9 859 65.4
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 3.4e-283 978.4 864 65.2
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 1.7e-282 976.1 879 63.6
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 9.3e-281 970.3 864 63.5
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-279 966.5 855 65.1
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 2.1e-277 959.1 861 63.8
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 2.1e-277 959.1 761 70.4
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 1.9e-273 946.0 857 64.3
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 1.9e-273 946.0 868 62.2
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 1.1e-270 936.8 878 60.6
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 3.3e-270 935.3 859 62.0
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.6e-269 932.9 867 62.9
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.8e-269 932.2 864 60.5
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 3.7e-269 931.8 864 62.0
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.1e-268 930.2 830 62.8
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.5e-267 926.4 865 61.0
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 2.0e-267 926.0 851 62.3
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 1.7e-266 922.9 858 62.1
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 1.4e-265 919.8 864 60.3
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.9e-265 919.5 868 60.9
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 2.7e-264 915.6 856 60.4
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 1.4e-263 913.3 850 62.2
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 3.0e-263 912.1 857 59.9
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 1.1e-262 910.2 862 61.1
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 1.1e-262 910.2 888 58.6
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.5e-262 909.1 867 60.4
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 4.3e-262 908.3 883 60.7
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.3e-261 906.7 854 60.3
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.7e-261 905.2 855 60.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 4.8e-261 904.8 856 60.2
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 8.2e-261 904.0 861 59.7
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 8.2e-261 904.0 862 60.6
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 1.1e-257 893.6 852 59.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.2e-257 892.1 840 60.2
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 7.2e-257 891.0 863 59.4
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 1.2e-256 890.2 870 59.4
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 3.9e-255 885.2 852 58.3
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 3.9e-255 885.2 858 58.4
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 3.9e-255 885.2 935 57.4
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 1.1e-254 883.6 754 65.5
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 1.5e-254 883.2 864 58.6
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 1.5e-254 883.2 862 58.5
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 4.4e-254 881.7 862 58.9
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 5.7e-254 881.3 868 58.6
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 6.3e-253 877.9 909 56.3
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.0e-250 870.5 841 59.5
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 2.0e-243 846.3 854 57.7
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 2.0e-243 846.3 869 57.1
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 5.9e-243 844.7 721 66.3
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 7.7e-243 844.3 840 58.0
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 7.7e-243 844.3 850 56.8
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 1.3e-242 843.6 877 56.8
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 8.0e-240 834.3 856 57.6
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 2.3e-239 832.8 855 58.1
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 6.7e-239 831.2 855 57.1
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 6.7e-239 831.2 860 58.0
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 3.3e-238 828.9 861 56.7
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 9.7e-238 827.4 858 57.2
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-237 827.0 858 57.1
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.7e-237 826.6 854 57.0
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 8.2e-237 824.3 847 56.7
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 5.3e-236 821.6 862 56.1
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 5.3e-236 821.6 828 56.8
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 2.7e-235 819.3 857 56.7
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 1.3e-234 817.0 854 57.5
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 8.5e-234 814.3 783 59.9
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 3.6e-232 808.9 866 55.2
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 1.8e-231 806.6 787 60.0
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 7.5e-230 801.2 855 56.4
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 4.8e-229 798.5 841 56.8
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 8.3e-229 797.7 857 56.4
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.0e-227 793.1 859 54.6
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 1.1e-225 787.3 826 55.7
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 1.5e-225 786.9 894 52.6
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 6.1e-224 781.6 941 51.0
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.2e-223 778.5 729 60.4
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 9.8e-222 774.2 847 55.1
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.4e-220 770.4 848 54.4
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.2e-219 767.3 878 52.3
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 6.6e-218 761.5 855 55.7
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 3.3e-217 759.2 789 56.3
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 8.9e-215 751.1 791 55.6
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.7e-213 745.7 1021 47.0
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 2.4e-212 743.0 734 60.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 7.0e-212 741.5 806 54.5
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 8.6e-210 734.6 725 58.2
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 7.3e-209 731.5 869 49.7
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-201 707.6 836 50.6
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 1.9e-201 706.8 853 52.1
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 2.5e-201 706.4 548 70.8
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 5.6e-201 705.3 599 64.9
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 4.0e-199 699.1 876 48.6
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 4.2e-188 662.5 851 49.4
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 7.8e-187 658.3 837 49.1
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 3.8e-181 639.4 547 66.5
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 1.2e-174 617.8 1109 39.9
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 3.4e-174 616.3 845 45.6
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 5.1e-170 602.4 874 45.2
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 9.6e-161 571.6 446 70.9
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.4e-159 567.8 870 44.1
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 6.7e-154 548.9 822 43.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 4.5e-150 536.2 570 54.9
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 4.2e-148 529.6 744 45.0
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 1.4e-146 524.6 823 43.5
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 6.7e-146 522.3 583 54.2
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.1e-145 521.5 759 43.2
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 4.1e-127 459.9 621 48.0
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 3.8e-125 453.4 884 36.9
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.2e-120 437.6 260 87.3
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 2.2e-112 411.0 533 46.5
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 4.0e-106 390.2 804 35.1
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 3.2e-103 380.6 365 60.0
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 4.7e-91 340.1 627 35.2
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.4e-89 334.0 419 50.6
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 5.8e-89 333.2 315 58.1
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.2e-88 331.3 716 32.8
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.9e-73 279.3 195 82.6
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 2.2e-64 251.5 283 54.8
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.3e-60 236.5 250 53.6
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 3.2e-39 167.9 396 36.4
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 8.7e-37 159.8 170 55.9
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 8.7e-37 159.8 394 37.1
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 8.7e-37 159.8 394 37.1
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 3.4e-33 147.9 138 62.3
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-28 132.5 183 47.5
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 1.5e-28 132.5 183 47.5
CAN.G793.43 Capsicum annuum HOM05D004054 ORTHO05D004945 5.7e-20 104.0 172 43.6
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 1.3e-19 102.8 335 27.8
A01p41860 Brassica napus HOM05D004054 ORTHO05D004945 2.2e-19 102.1 95 61.1
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 1.8e-18 99.0 184 35.9
C06p17170 Brassica napus HOM05D004054 ORTHO05D004945 9.1e-18 96.7 162 44.4
BolC3t18505H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-17 96.3 201 38.3
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 1.0e-16 93.2 60 80.0
C08p43480 Brassica napus HOM05D004054 ORTHO05D004945 1.3e-16 92.8 133 44.4
PGSC0003DMG402017622 Solanum tuberosum HOM05D004054 ORTHO05D004945 4.7e-14 84.3 101 52.5
MBI09_g47007_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.2e-11 75.5 96 49.0
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 8.2e-11 73.6 220 27.3
A06p30220 Brassica napus HOM05D003604 ORTHO05D004110 1.1e-10 73.2 79 55.7
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 5.3e-10 70.9 70 52.9
BcaC08g44394 Brassica carinata HOM05D004054 ORTHO05D004945 1.2e-09 69.7 157 37.6
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.7e-08 65.9 138 37.0
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-08 65.1 47 63.8
C06p10280 Brassica napus HOM05D011797 ORTHO05D012335 3.8e-08 64.7 37 86.5
Dinv34201 Davidia involucrata HOM05D004054 ORTHO05D004945 9.4e-07 60.1 60 56.7


User provided reference genes

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