Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.7e-24 115.2 89 100.0
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 2.0e-19 99.0 89 91.0
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 2.4e-17 92.0 88 58.0
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 9.1e-17 90.1 87 88.5
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.7e-15 85.9 86 54.7
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 8.6e-15 83.6 87 82.8
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 1.5e-14 82.8 88 69.3
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 2.5e-14 82.0 100 61.0
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 5.5e-14 80.9 86 53.5
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 7.2e-14 80.5 89 79.8
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 1.6e-13 79.3 87 50.6
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.6e-13 79.3 103 49.5
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 3.6e-13 78.2 83 54.2
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 4.7e-13 77.8 87 51.7
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 6.1e-13 77.4 87 52.9
Manes.03G194900 Manihot esculenta HOM05D003821 ORTHO05D004449 8.0e-13 77.0 79 87.3
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 1.4e-12 76.3 80 70.0
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 1.8e-12 75.9 86 58.1
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.8e-12 75.9 86 51.2
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 2.3e-12 75.5 87 50.6
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 2.3e-12 75.5 78 52.6
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.3e-12 75.5 88 51.1
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 3.0e-12 75.1 80 53.8
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 4.0e-12 74.7 78 52.6
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 6.8e-12 73.9 87 49.4
Prupe.8G258100 Prunus persica HOM05D003821 ORTHO05D004449 6.8e-12 73.9 76 86.8
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 1.2e-11 73.2 89 48.3
Ciclev10023083m.g Citrus clementina HOM05D003821 ORTHO05D004449 2.0e-11 72.4 90 78.9
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 2.6e-11 72.0 82 50.0
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 3.4e-11 71.6 82 50.0
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.4e-11 71.6 80 61.2
TAR365G0642 Trochodendron aralioides HOM05D003821 ORTHO05D004449 3.4e-11 71.6 88 76.1
Lj5g0023739 Lotus japonicus HOM05D003821 ORTHO05D004449 4.4e-11 71.2 82 82.9
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 4.4e-11 71.2 80 70.0
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 5.7e-11 70.9 89 48.3
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 5.7e-11 70.9 82 50.0
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 5.7e-11 70.9 82 69.5
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 7.5e-11 70.5 87 49.4
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 9.8e-11 70.1 176 34.1
PGR004G1635 Punica granatum HOM05D003821 ORTHO05D004449 1.3e-10 69.7 89 80.9
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.7e-10 69.3 80 63.8
Thecc.01G297100 Theobroma cacao HOM05D003821 ORTHO05D004449 1.7e-10 69.3 90 76.7
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.7e-10 69.3 82 53.7
TWI14G0562 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.7e-10 69.3 90 77.8
THA.LOC104802574 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 2.8e-10 68.6 82 80.5
Manes.01G217100 Manihot esculenta HOM05D003821 ORTHO05D004449 3.7e-10 68.2 89 76.4
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 4.9e-10 67.8 92 45.7
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 6.3e-10 67.4 86 48.8
Duzib138G0767 Durio zibethinus HOM05D003821 ORTHO05D004449 8.3e-10 67.0 87 72.4
THA.LOC104817510 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 8.3e-10 67.0 88 71.6
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 1.1e-09 66.6 86 45.3
Atru.chr5.1182 Acer truncatum HOM05D003821 ORTHO05D004449 1.4e-09 66.2 78 80.8
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.8e-09 65.9 86 47.7
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.8e-09 65.9 115 40.9
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 2.4e-09 65.5 85 48.2
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 2.4e-09 65.5 88 46.6
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 2.4e-09 65.5 94 44.7
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 3.1e-09 65.1 82 48.8
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.1e-09 65.1 88 45.5
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.1e-09 64.7 80 47.5
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.1e-09 64.7 80 47.5
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 7.0e-09 63.9 80 48.8
CANSAT25G1361 Cannabis sativa HOM05D003821 ORTHO05D004449 7.0e-09 63.9 90 62.2
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 7.0e-09 63.9 84 46.4
Gohir.A12G010600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.2e-08 63.2 80 77.5
THA.LOC104821775 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.2e-08 63.2 71 85.9
Duzib133G0834 Durio zibethinus HOM05D003821 ORTHO05D004449 1.6e-08 62.8 89 73.0
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.6e-08 62.8 84 47.6
Gohir.D12G011000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.6e-08 62.8 90 74.4
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 1.6e-08 62.8 101 39.6
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.0e-08 62.4 76 48.7
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 2.7e-08 62.0 103 42.7
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 4.5e-08 61.2 89 44.9
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 4.5e-08 61.2 89 42.7
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 5.9e-08 60.8 129 38.0
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 5.9e-08 60.8 102 44.1
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 7.8e-08 60.5 89 47.2
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 7.8e-08 60.5 79 45.6
Glyma.02G154700 Glycine max HOM05D003821 ORTHO05D004449 7.8e-08 60.5 89 73.0
Gorai.008G011000 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.8e-08 60.5 89 74.2
Glyma.10G019600 Glycine max HOM05D003821 ORTHO05D004449 1.0e-07 60.1 89 73.0
Gohir.A02G049300 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-07 60.1 87 72.4
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 1.3e-07 59.7 93 41.9
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 1.3e-07 59.7 93 41.9
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.3e-07 59.7 75 45.3
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 1.7e-07 59.3 82 46.3
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 1.7e-07 59.3 105 39.0
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 1.7e-07 59.3 89 44.9
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 1.7e-07 59.3 71 49.3
Psat6g166600 Pisum sativum HOM05D003821 ORTHO05D004449 1.7e-07 59.3 80 71.2
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 2.3e-07 58.9 102 41.2
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 2.3e-07 58.9 86 45.3
C01p27060 Brassica napus HOM05D003821 ORTHO05D004449 2.3e-07 58.9 31 87.1
Sp7g14190 Schrenkiella parvula HOM05D003821 ORTHO05D004449 2.3e-07 58.9 31 87.1
MELO3C016019.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.9e-07 58.5 31 87.1
RcHm_v2.0_Chr4g0422231 Rosa chinensis HOM05D003821 ORTHO05D004449 2.9e-07 58.5 31 87.1
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 3.9e-07 58.2 90 46.7
Gohir.A11G115200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.9e-07 58.2 90 71.1
Gohir.D11G120200 Gossypium hirsutum HOM05D003821 ORTHO05D004449 3.9e-07 58.2 90 71.1
Gorai.007G128900 Gossypium raimondii HOM05D003821 ORTHO05D004449 3.9e-07 58.2 90 71.1
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 3.9e-07 58.2 116 38.8
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 3.9e-07 58.2 84 42.9
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 6.6e-07 57.4 136 33.8
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 6.6e-07 57.4 107 41.1
Cc03_g01940 Coffea canephora HOM05D003821 ORTHO05D004449 6.6e-07 57.4 31 87.1
Peaxi162Scf00086g00435 Petunia axillaris HOM05D003821 ORTHO05D004449 6.6e-07 57.4 31 83.9
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 8.6e-07 57.0 100 42.0
Lalb_Chr15g0078581 Lupinus albus HOM05D003821 ORTHO05D004449 8.6e-07 57.0 31 83.9
MD11G1304500 Malus domestica HOM05D003821 ORTHO05D004449 8.6e-07 57.0 31 83.9
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 8.6e-07 57.0 98 41.8
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 8.6e-07 57.0 80 43.8
GSVIVG01017758001 Vitis vinifera HOM05D003821 ORTHO05D004449 8.6e-07 57.0 31 87.1
Nn3g21436 Nelumbo nucifera HOM05D000763 ORTHO05D000599 1.1e-06 56.6 31 80.6
Hund05412 Selenicereus undatus HOM05D003821 ORTHO05D004449 1.1e-06 56.6 31 83.9
BolC8t48318H Brassica oleracea HOM05D003821 ORTHO05D004449 1.5e-06 56.2 89 44.9
Lalb_Chr18g0047131 Lupinus albus HOM05D003821 ORTHO05D004449 1.9e-06 55.8 31 83.9
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 1.9e-06 55.8 112 35.7
Phvul.007G106500 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 2.5e-06 55.5 89 70.8
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 4.3e-06 54.7 120 32.5
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 7.3e-06 53.9 98 41.8
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 9.5e-06 53.5 31 80.6
Medtr7g108615 Medicago truncatula HOM05D003821 ORTHO05D004449 9.5e-06 53.5 31 77.4
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 9.5e-06 53.5 117 35.9


User provided reference genes

Program Settings