Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.5e-311 1072.0 560 100.0
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 4.8e-297 1023.8 560 94.5
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 2.2e-294 1015.0 560 93.4
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 3.6e-276 954.5 560 87.3
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 5.7e-274 947.2 562 87.2
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 3.5e-271 937.9 562 85.8
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.5e-269 932.6 562 85.8
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 7.5e-266 920.2 562 84.9
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 4.8e-265 917.5 563 84.9
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.1e-264 914.4 561 84.7
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.6e-263 912.5 561 83.8
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 7.7e-263 910.2 561 83.4
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 7.7e-263 910.2 561 83.4
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 2.5e-261 905.2 561 83.4
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 3.6e-260 901.4 561 82.2
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 8.8e-259 896.7 600 78.7
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 6.3e-257 890.6 560 81.4
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 5.4e-256 887.5 562 82.9
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 7.0e-256 887.1 562 83.8
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 2.0e-255 885.6 561 81.1
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 6.1e-252 874.0 562 80.4
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.4e-251 872.8 562 79.7
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 1.8e-251 872.5 562 79.5
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 5.2e-251 870.9 626 74.3
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 5.7e-250 867.5 561 80.2
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 7.5e-250 867.1 562 79.5
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 1.3e-249 866.3 557 81.1
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 2.9e-249 865.1 561 79.9
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 1.4e-248 862.8 561 78.8
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 7.0e-248 860.5 561 78.6
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.5e-247 858.2 561 79.3
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 4.6e-247 857.8 562 79.2
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 5.0e-246 854.4 561 78.4
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 79.9
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 79.0
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 8.6e-246 853.6 562 78.6
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.1e-245 853.2 561 78.8
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.2e-244 849.7 561 78.8
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 3.6e-244 848.2 560 78.0
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 8.0e-244 847.0 562 76.5
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.8e-243 845.9 560 79.1
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 1.8e-243 845.9 561 78.4
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 8.9e-243 843.6 561 77.0
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 2.6e-242 842.0 561 77.5
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 7.5e-242 840.5 574 77.2
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.1e-240 836.6 613 74.2
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.9e-240 835.9 562 76.9
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 1.9e-240 835.9 561 77.0
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.2e-240 835.1 515 83.5
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 7.0e-240 833.9 542 80.6
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.0e-238 830.1 565 77.3
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.9e-237 825.9 557 77.6
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 4.3e-237 824.7 561 75.8
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 4.3e-237 824.7 561 75.8
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.6e-236 822.8 560 76.6
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.4e-235 819.7 560 77.1
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 6.8e-235 817.4 562 74.4
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 9.8e-234 813.5 540 77.4
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 1.9e-232 809.3 565 74.9
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 5.4e-232 807.7 561 75.2
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.6e-231 806.2 576 75.3
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.3e-230 803.1 557 76.3
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 8.6e-230 800.4 561 74.7
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.1e-227 793.5 561 74.2
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.4e-227 793.1 561 74.7
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 2.3e-227 792.3 562 73.1
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 6.8e-227 790.8 648 67.4
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 8.9e-227 790.4 561 74.3
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 8.9e-227 790.4 561 73.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 4.4e-226 788.1 513 78.8
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 7.6e-226 787.3 566 72.1
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 2.9e-225 785.4 562 73.5
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 2.9e-225 785.4 562 73.5
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 6.4e-225 784.3 562 72.1
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 5.4e-224 781.2 511 79.1
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 4.6e-223 778.1 562 72.6
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 2.3e-222 775.8 561 72.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 2.5e-221 772.3 561 72.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 4.3e-221 771.5 562 71.0
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 5.6e-221 771.2 562 72.6
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 5.6e-221 771.2 561 72.5
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 7.3e-221 770.8 576 71.2
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 7.3e-221 770.8 514 77.8
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.7e-220 768.1 561 73.3
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 2.0e-218 762.7 546 72.5
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 2.0e-218 762.7 562 68.5
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.3e-217 760.0 532 74.8
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 7.1e-216 754.2 531 73.8
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.7e-209 733.0 595 69.4
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.3e-196 690.3 476 74.6
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.0e-193 680.6 393 88.5
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.1e-176 624.0 455 68.4
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 5.5e-176 621.7 434 72.1
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 8.8e-174 614.4 562 58.0
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 2.6e-173 612.8 563 58.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 1.8e-163 580.1 569 54.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 3.1e-163 579.3 553 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 6.5e-161 571.6 563 54.9
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.5e-152 543.9 339 82.6
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.0e-149 533.5 382 72.0
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.8e-148 529.6 566 49.5
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 1.1e-144 517.7 522 58.8
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 4.5e-138 495.7 306 84.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 4.3e-128 462.6 349 69.6
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 1.9e-123 447.2 356 61.8
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.2e-122 444.5 362 64.4
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 6.9e-102 375.6 260 72.3
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 4.8e-87 326.2 541 38.4
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 6.5e-76 289.3 212 73.6
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 8.7e-73 278.9 197 75.1
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 2.7e-66 257.3 141 85.1
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.7e-63 248.1 200 68.5
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-56 225.3 182 59.3
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-55 221.9 130 84.6
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 4.2e-43 180.3 160 63.1
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 4.7e-34 150.2 91 74.7
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 5.2e-33 146.7 158 54.4
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 5.2e-33 146.7 158 54.4
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 8.8e-33 146.0 90 78.9
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 1.5e-32 145.2 180 48.9
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.3e-31 142.1 178 48.3
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 2.7e-29 134.4 130 61.5
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 3.3e-27 127.5 167 47.3
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 3.4e-24 117.5 77 71.4
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-21 109.0 128 50.8
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 2.0e-21 108.2 58 87.9
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 4.3e-19 100.5 87 65.5
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.2e-18 99.0 90 60.0
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-14 85.9 77 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 3.4e-08 64.3 140 27.9
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 4.4e-08 63.9 160 25.6
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 4.9e-07 60.5 47 53.2
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.1e-06 59.3 47 70.2
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.4e-06 58.9 170 23.5
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 7.0e-06 56.6 159 23.9
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 9.2e-06 56.2 164 24.4


User provided reference genes

Program Settings