Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 0.0e+00 2028.4 1066 100.0
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 0.0e+00 1566.6 1060 82.4
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.5e-118 431.8 1019 37.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 2.2e-104 384.8 1148 34.5
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 2.8e-96 357.8 1123 33.4
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 3.1e-95 354.4 1179 32.3
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.4e-87 328.2 912 34.3
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 1.3e-77 295.8 479 44.7
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 6.5e-77 293.5 759 35.2
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.1e-75 288.5 774 35.9
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.2e-73 282.7 945 32.7
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 8.3e-72 276.6 897 32.7
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 5.3e-71 273.9 905 31.8
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.5e-68 265.0 761 32.6
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 5.5e-68 263.8 792 32.8
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.8e-66 258.8 761 32.3
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 2.3e-66 258.5 766 32.6
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 2.0e-65 255.4 470 43.2
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 4.4e-65 254.2 769 33.2
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 5.4e-63 247.3 390 44.4
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 7.0e-63 246.9 751 34.5
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 2.7e-62 245.0 791 31.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 3.5e-62 244.6 362 49.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 6.6e-61 240.4 779 34.5
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.2e-60 237.7 424 42.9
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 3.6e-59 234.6 925 30.1
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 4.7e-59 234.2 750 32.3
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 6.1e-59 233.8 397 43.6
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.8e-58 232.3 396 44.4
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.2e-57 229.6 354 43.5
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 7.5e-57 226.9 371 43.4
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.4e-55 222.6 560 36.1
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.1e-55 221.5 767 32.3
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 3.1e-55 221.5 770 30.9
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 7.0e-55 220.3 748 32.4
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 9.2e-55 219.9 751 31.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.2e-54 219.5 751 31.7
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.2e-54 219.5 777 30.4
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 2.0e-54 218.8 311 45.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 5.9e-54 217.2 381 41.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.8e-54 216.9 801 32.6
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.9e-53 214.5 764 32.2
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.5e-52 212.6 730 31.2
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.7e-51 207.6 230 50.0
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 5.2e-50 204.1 932 29.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 6.8e-50 203.8 383 39.4
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 2.6e-49 201.8 772 31.0
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 2.6e-49 201.8 804 29.6
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 9.8e-49 199.9 418 40.0
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.9e-47 195.7 462 36.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.2e-47 194.9 690 29.9
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 3.2e-47 194.9 242 49.2
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 4.1e-47 194.5 430 39.3
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.7e-46 191.8 462 36.1
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.0e-45 188.3 468 35.7
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.5e-44 185.3 409 38.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 3.3e-44 184.9 873 29.0
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 4.3e-44 184.5 357 38.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.6e-44 184.1 260 43.5
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 1.2e-43 183.0 380 38.7
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.6e-43 182.6 328 42.1
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.6e-43 181.4 359 39.0
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 8.0e-43 180.3 637 31.1
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 1.4e-42 179.5 795 29.4
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.3e-42 178.7 796 28.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.3e-42 178.7 274 43.1
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 6.8e-42 177.2 941 28.5
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.5e-41 176.0 417 35.5
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 9.8e-41 173.3 670 30.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 2.2e-40 172.2 346 40.2
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.9e-40 171.8 339 41.3
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.4e-39 169.5 270 43.7
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 2.4e-39 168.7 326 40.2
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 5.4e-39 167.5 372 39.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.7e-38 165.2 833 28.5
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.8e-38 163.7 380 37.6
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.5e-36 159.5 457 33.0
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 1.9e-36 159.1 375 36.5
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 2.5e-36 158.7 378 36.0
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 9.5e-36 156.8 268 39.2
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 1.2e-35 156.4 285 39.3
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.6e-35 156.0 275 38.5
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 2.8e-35 155.2 463 32.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 6.2e-35 154.1 327 38.2
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-34 153.3 278 37.4
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.1e-34 153.3 278 37.4
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.1e-34 153.3 362 36.7
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.8e-34 152.5 276 39.5
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 4.0e-34 151.4 158 55.7
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 4.0e-34 151.4 138 58.7
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 5.2e-34 151.0 274 39.1
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 8.9e-34 150.2 398 34.7
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.0e-33 149.1 280 37.5
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 2.0e-33 149.1 745 28.9
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 8.3e-32 143.7 384 34.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.9e-31 142.5 366 34.4
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.9e-31 142.5 266 36.1
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 3.2e-31 141.7 335 34.3
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 7.1e-31 140.6 320 35.6
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.2e-31 140.2 289 38.1
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.2e-30 139.8 263 39.9
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.2e-30 139.8 935 25.0
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 3.5e-30 138.3 264 35.2
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 4.6e-30 137.9 354 35.0
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 7.8e-30 137.1 388 34.3
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.7e-29 136.0 391 33.0
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.7e-29 136.0 337 35.3
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.3e-29 135.6 357 33.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 3.0e-29 135.2 760 28.3
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 8.6e-29 133.7 372 34.9
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.1e-28 133.3 275 34.5
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 7.3e-28 130.6 264 34.5
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 9.5e-28 130.2 254 38.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.1e-27 129.0 315 34.0
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.4e-26 126.3 267 36.3
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 1.4e-26 126.3 443 33.0
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 4.0e-26 124.8 115 53.9
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 6.8e-26 124.0 260 34.6
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-25 123.2 262 35.5
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.2e-25 123.2 598 33.3
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 2.6e-25 122.1 272 38.2
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 5.8e-25 120.9 361 31.9
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 7.6e-25 120.6 375 31.7
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 3.8e-24 118.2 509 28.7
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 4.9e-24 117.9 215 37.2
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 6.4e-24 117.5 336 33.3
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 8.4e-24 117.1 249 36.9
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 7.1e-23 114.0 313 33.2
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.6e-22 112.8 263 33.5
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 7.8e-22 110.5 180 41.7
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 1.5e-20 106.3 152 40.1
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.3e-20 104.8 150 42.7
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.3e-19 103.2 215 40.9
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 3.6e-19 101.7 611 27.3
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 6.2e-19 100.9 158 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.1e-18 98.6 278 30.6
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.0e-18 97.1 239 32.2
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.0e-17 95.9 61 73.8
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 1.1e-15 90.1 56 82.1
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.2e-15 88.2 146 37.7
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 4.2e-15 88.2 146 37.7
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 4.2e-15 88.2 161 37.3
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 1.2e-14 86.7 132 36.4
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 2.1e-14 85.9 317 28.4
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 4.6e-14 84.7 129 34.1
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 3.0e-13 82.0 384 27.6
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 3.0e-13 82.0 184 32.6
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-12 80.1 133 42.9
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 1.9e-12 79.3 214 33.6
Sabra10G0016200 Salix brachista HOM05D003739 ORTHO05D003996 4.8e-11 74.7 46 82.6
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 6.2e-11 74.3 417 26.6
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 6.4e-08 64.3 55 58.2
TPR.G20410 Trifolium pratense HOM05D003739 ORTHO05D003996 6.4e-08 64.3 210 34.3
Thhalv10000433m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.1e-07 60.8 70 47.1
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 1.6e-06 59.7 262 23.7
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.7e-06 58.9 136 39.0
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 3.5e-06 58.5 113 38.1


User provided reference genes

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