Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G014100 Populus trichocarpa HOM05D006926 ORTHO05D008863 6.6e-131 472.6 233 100.0
Sabra10G0009000 Salix brachista HOM05D006926 ORTHO05D008863 1.2e-119 435.3 232 91.8
Manes.03G195800 Manihot esculenta HOM05D006926 ORTHO05D008863 7.2e-85 319.7 233 67.4
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 5.9e-79 300.1 234 64.1
Cpa.g.sc16.177 Carica papaya HOM05D006926 ORTHO05D008863 3.0e-75 287.7 234 60.7
Cfa015391 Carpinus fangiana HOM05D006926 ORTHO05D008863 3.9e-75 287.3 222 65.3
QL06p009008 Quercus lobata HOM05D006926 ORTHO05D008863 6.7e-75 286.6 222 64.9
COL.COLO4_13863 Corchorus olitorius HOM05D006926 ORTHO05D008863 2.6e-74 284.6 230 63.5
Atru.chr4.2848 Acer truncatum HOM05D006926 ORTHO05D008863 3.3e-74 284.3 232 63.4
Prupe.1G135500 Prunus persica HOM05D006926 ORTHO05D008863 1.8e-72 278.5 231 63.2
FvH4_4g18230 Fragaria vesca HOM05D006926 ORTHO05D008863 2.4e-72 278.1 232 62.9
FAN12G2558 Fragaria x ananassa HOM05D006926 ORTHO05D008863 2.4e-72 278.1 232 62.9
FAN12G4333 Fragaria x ananassa HOM05D006926 ORTHO05D008863 2.4e-72 278.1 232 62.9
Rhsim04G0222900 Rhododendron simsii HOM05D006926 ORTHO05D008863 7.0e-72 276.6 227 63.4
Thecc.04G285300 Theobroma cacao HOM05D006926 ORTHO05D008863 1.6e-71 275.4 221 63.8
Haze_01195 Corylus avellana HOM05D006926 ORTHO05D008863 5.9e-71 273.5 179 74.3
FAN17G0573 Fragaria x ananassa HOM05D006926 ORTHO05D008863 7.7e-71 273.1 230 62.2
TWI09G0560 Tripterygium wilfordii HOM05D006926 ORTHO05D008863 3.8e-70 270.8 226 61.9
Lj9C380T3 Lonicera japonica HOM05D006926 ORTHO05D008863 9.4e-69 266.2 229 61.1
TAR365G0466 Trochodendron aralioides HOM05D006926 ORTHO05D008863 9.4e-69 266.2 231 59.7
vmacro08158 Vaccinium macrocarpon HOM05D006926 ORTHO05D008863 6.1e-68 263.5 199 65.8
CSS0040550 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.1e-66 259.2 222 60.8
CANSAT78G1021 Cannabis sativa HOM05D006926 ORTHO05D008863 1.5e-66 258.8 232 59.9
Cc00_g07570 Coffea canephora HOM05D006926 ORTHO05D008863 3.3e-66 257.7 227 57.7
PGR031G3585 Punica granatum HOM05D006926 ORTHO05D008863 7.5e-66 256.5 231 55.0
Cc01_g06580 Coffea canephora HOM05D006926 ORTHO05D008863 1.7e-65 255.4 224 58.0
Gohir.A09G238600 Gossypium hirsutum HOM05D006926 ORTHO05D008863 1.7e-65 255.4 221 57.9
RcHm_v2.0_Chr4g0422371 Rosa chinensis HOM05D006926 ORTHO05D008863 1.7e-65 255.4 220 60.9
Gohir.D09G239500 Gossypium hirsutum HOM05D006926 ORTHO05D008863 2.2e-65 255.0 219 58.4
Gorai.006G262300 Gossypium raimondii HOM05D006926 ORTHO05D008863 2.2e-65 255.0 219 58.4
HanXRQChr05g0150001 Helianthus annuus HOM05D006926 ORTHO05D008863 1.4e-64 252.3 185 63.8
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 1.4e-64 252.3 191 65.4
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.8e-64 251.9 231 55.0
Nitab4.5_0005852g0010 Nicotiana tabacum HOM05D006926 ORTHO05D008863 5.3e-64 250.4 204 62.7
Peaxi162Scf01123g00213 Petunia axillaris HOM05D006926 ORTHO05D008863 5.3e-64 250.4 215 61.9
CSS0048032 Camellia sinensis var. sinensis HOM05D006926 ORTHO05D008863 1.2e-63 249.2 231 56.7
Nitab4.5_0000059g0440 Nicotiana tabacum HOM05D006926 ORTHO05D008863 7.7e-63 246.5 186 66.1
Psat2g008440 Pisum sativum HOM05D006926 ORTHO05D008863 1.0e-62 246.1 233 54.1
Oeu029705.1 Olea europaea HOM05D006926 ORTHO05D008863 2.9e-62 244.6 205 60.5
CAN.G185.37 Capsicum annuum HOM05D006926 ORTHO05D008863 6.5e-62 243.4 210 59.5
Medtr5g095130 Medicago truncatula HOM05D006926 ORTHO05D008863 6.5e-62 243.4 238 54.2
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 1.5e-61 242.3 232 55.2
PGSC0003DMG400006295 Solanum tuberosum HOM05D006926 ORTHO05D008863 1.5e-61 242.3 186 65.1
Solyc01g080720.4 Solanum lycopersicum HOM05D006926 ORTHO05D008863 1.9e-61 241.9 186 64.5
AL3G18040 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.5e-61 241.5 178 65.7
AL3G18070 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.5e-61 241.5 178 65.7
AL3G18090 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 2.5e-61 241.5 178 65.7
ClCG05G006130 Citrullus lanatus HOM05D006926 ORTHO05D008863 7.2e-61 240.0 203 63.1
AT3G06920 Arabidopsis thaliana HOM05D006926 ORTHO05D008863 9.4e-61 239.6 178 64.6
TPR.G14143 Trifolium pratense HOM05D006926 ORTHO05D008863 9.4e-61 239.6 217 56.7
BraA03t12676Z Brassica rapa HOM05D006926 ORTHO05D008863 1.2e-60 239.2 185 64.3
Thhalv10020026m.g Eutrema salsugineum HOM05D006926 ORTHO05D008863 2.1e-60 238.4 177 64.4
A03p34960 Brassica napus HOM05D006926 ORTHO05D008863 2.7e-60 238.0 196 61.2
Nn2g14325 Nelumbo nucifera HOM05D006926 ORTHO05D008863 3.6e-60 237.7 230 53.0
SHI00269 Sapria himalayana HOM05D006926 ORTHO05D008863 4.7e-60 237.3 187 63.1
C03p42540 Brassica napus HOM05D006926 ORTHO05D008863 6.1e-60 236.9 200 60.5
AL159U10010 Arabidopsis lyrata HOM05D006926 ORTHO05D008863 8.0e-60 236.5 178 65.2
TPR.G14145 Trifolium pratense HOM05D006926 ORTHO05D008863 8.0e-60 236.5 217 55.8
Actinidia40273 Actinidia chinensis HOM05D006926 ORTHO05D008863 3.0e-59 234.6 205 61.0
Sp3g05870 Schrenkiella parvula HOM05D006926 ORTHO05D008863 3.0e-59 234.6 206 58.3
CARHR081530 Cardamine hirsuta HOM05D006926 ORTHO05D008863 1.2e-58 232.6 219 57.1
EL10Ac1g01925 Beta vulgaris HOM05D006926 ORTHO05D008863 2.6e-58 231.5 228 53.1
Nn6g34671 Nelumbo nucifera HOM05D006926 ORTHO05D008863 2.6e-58 231.5 230 51.7
SalBow1G7679 Salvia bowleyana HOM05D006926 ORTHO05D008863 1.3e-57 229.2 233 50.2
AUR62035127 Chenopodium quinoa HOM05D006926 ORTHO05D008863 6.3e-57 226.9 234 53.0
Sc10g0006430 Simmondsia chinensis HOM05D006926 ORTHO05D008863 2.4e-56 224.9 172 62.8
Aa31LG5G17490 Aethionema arabicum HOM05D006926 ORTHO05D008863 1.6e-55 222.2 162 64.8
AUR62040613 Chenopodium quinoa HOM05D006926 ORTHO05D008863 1.6e-55 222.2 180 58.9
arahy.Tifrunner.gnm1.ann1.R7Y0VJ Arachis hypogaea HOM05D006926 ORTHO05D008863 2.0e-55 221.9 219 54.3
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 1.0e-54 219.5 170 62.4
VMungo0647G0525 Vigna mungo HOM05D006926 ORTHO05D008863 1.0e-54 219.5 195 56.4
Ah.00g000960 Amaranthus hybridus HOM05D006926 ORTHO05D008863 6.5e-54 216.9 223 50.2
Migut.G00155 Erythranthe guttata HOM05D006926 ORTHO05D008863 8.5e-54 216.5 218 53.2
THA.LOC104827343 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 1.5e-53 215.7 214 56.1
arahy.Tifrunner.gnm1.ann1.DI2NU4 Arachis hypogaea HOM05D006926 ORTHO05D008863 5.5e-53 213.8 214 53.7
Sed0000576 Sechium edule HOM05D006926 ORTHO05D008863 5.5e-53 213.8 223 54.3
Nn1g09562 Nelumbo nucifera HOM05D006926 ORTHO05D008863 1.6e-52 212.2 196 55.1
Lalb_Chr17g0348851 Lupinus albus HOM05D006926 ORTHO05D008863 2.7e-52 211.5 195 56.9
MBI01_g30450_MAGBIO Magnolia biondii HOM05D006926 ORTHO05D008863 3.6e-52 211.1 159 64.8
DCAR_006643 Daucus carota HOM05D006926 ORTHO05D008863 6.1e-52 210.3 164 61.6
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.4e-51 209.1 222 51.8
BolC3t16524H Brassica oleracea HOM05D006926 ORTHO05D008863 8.8e-51 206.5 166 60.8
Sopen01g030780 Solanum pennellii HOM05D006926 ORTHO05D008863 1.5e-50 205.7 186 57.5
MSTRG.10097 Avicennia marina HOM05D006926 ORTHO05D008863 2.6e-50 204.9 205 50.7
CsaV3_3G014680 Cucumis sativus L. HOM05D006926 ORTHO05D008863 1.4e-48 199.1 209 53.1
CiPaw.01G148200 Carya illinoinensis HOM05D006926 ORTHO05D008863 8.6e-46 189.9 173 56.1
PSO302G0177 Papaver somniferum HOM05D006926 ORTHO05D008863 1.0e-43 183.0 218 46.3
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 2.0e-42 178.7 132 63.6
LjContig00081g0009495 Lotus japonicus HOM05D006926 ORTHO05D008863 2.0e-42 178.7 130 63.8
Ca_06384_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 2.6e-42 178.3 141 61.0
Ca_29965_v3 Cicer arietinum L. HOM05D006926 ORTHO05D008863 2.6e-42 178.3 141 61.0
CDE01G0787 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 2.0e-39 168.7 171 50.9
Phvul.008G277600 Phaseolus vulgaris HOM05D006926 ORTHO05D008863 2.7e-39 168.3 151 53.6
Lalb_Chr10g0107371 Lupinus albus HOM05D006926 ORTHO05D008863 5.6e-37 160.6 170 50.0
SGA_v2.0_scaffold67G22630 Striga asiatica HOM05D006926 ORTHO05D008863 1.6e-36 159.1 247 40.5
Dinv26449 Davidia involucrata HOM05D006926 ORTHO05D008863 2.1e-36 158.7 100 78.0
Eucgr.C02193 Eucalyptus grandis HOM05D006926 ORTHO05D008863 8.0e-36 156.8 149 56.4
ATR0796G196 Amborella trichopoda HOM05D006926 ORTHO05D008863 1.8e-35 155.6 169 47.3
CDE11G0294 Ceratophyllum demersum HOM05D006926 ORTHO05D008863 7.8e-31 140.2 143 47.6
HPP92_015997 Vanilla planifolia HOM05D006926 ORTHO05D008863 1.9e-24 119.0 131 44.3
Eucgr.B01739 Eucalyptus grandis HOM05D006926 ORTHO05D008863 1.5e-21 109.4 81 60.5
Carub.0003s0644 Capsella rubella HOM05D006926 ORTHO05D008863 2.9e-17 95.1 82 59.8
Ciclev10007037m.g Citrus clementina HOM05D006926 ORTHO05D008863 7.8e-15 87.0 47 91.5
Os07g0249100 Oryza sativa ssp. japonica HOM05D006926 ORTHO05D008863 1.0e-14 86.7 134 36.6
GSVIVG01017733001 Vitis vinifera HOM05D006926 ORTHO05D008863 1.7e-14 85.9 47 89.4
Zm00001eb304410 Zea mays HOM05D006926 ORTHO05D008863 3.0e-14 85.1 131 38.2
TAR365G0845 Trochodendron aralioides HOM05D006926 ORTHO05D008863 1.1e-13 83.2 45 88.9
SEGI_24878 Sequoiadendron giganteum HOM05D006926 ORTHO05D008863 1.1e-11 76.6 111 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 6.8e-11 73.9 147 29.3
Lj3P875T45 Lonicera japonica HOM05D000424 ORTHO05D000355 4.4e-10 71.2 145 26.9
Hma1.2p1_0951F.1_g240750 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 7.6e-10 70.5 192 26.0
Lsat_1_v5_gn_8_31281 Lactuca sativa HOM05D006926 ORTHO05D008863 7.6e-10 70.5 45 71.1
Sed0021384 Sechium edule HOM05D006926 ORTHO05D008863 6.4e-09 67.4 46 67.4
CiPaw.06G013000 Carya illinoinensis HOM05D000424 ORTHO05D000355 8.4e-09 67.0 152 28.3
HanXRQChr09g0263281 Helianthus annuus HOM05D002460 ORTHO05D002716 1.9e-08 65.9 127 31.5
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 3.2e-08 65.1 149 27.5
MBI14_g24311_MAGBIO Magnolia biondii HOM05D006895 ORTHO05D008605 3.2e-08 65.1 134 26.9
Glyma.20G125900 Glycine max HOM05D000424 ORTHO05D000355 4.2e-08 64.7 141 28.4
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 4.2e-08 64.7 149 28.2
vmacro00421 Vaccinium macrocarpon HOM05D000424 ORTHO05D000355 4.2e-08 64.7 151 28.5
PGR004G2850 Punica granatum HOM05D006596 ORTHO05D008497 5.4e-08 64.3 151 25.2
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 9.3e-08 63.5 109 29.4
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 1.2e-07 63.2 159 26.4
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 2.7e-07 62.0 147 29.9
Glyma.10G264500 Glycine max HOM05D000424 ORTHO05D000355 2.7e-07 62.0 184 24.5
Phvul.007G037500 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 2.7e-07 62.0 141 27.0
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 2.7e-07 62.0 145 23.4
GSVIVG01029740001 Vitis vinifera HOM05D000424 ORTHO05D002854 2.7e-07 62.0 208 26.9
Migut.B00878 Erythranthe guttata HOM05D007830 ORTHO05D009947 3.5e-07 61.6 136 25.0
SEGI_06598 Sequoiadendron giganteum HOM05D005973 ORTHO05D007285 3.5e-07 61.6 188 21.8
Sc16g0009730 Simmondsia chinensis HOM05D007128 ORTHO05D009059 3.5e-07 61.6 155 28.4
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.5e-07 61.6 162 29.0
MBI06_g27503_MAGBIO Magnolia biondii HOM05D007830 ORTHO05D009947 4.6e-07 61.2 155 23.9
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 4.6e-07 61.2 162 28.4
Nn5g30994 Nelumbo nucifera HOM05D006218 ORTHO05D007338 6.0e-07 60.8 144 25.0
Peaxi162Scf00020g00192 Petunia axillaris HOM05D002460 ORTHO05D002716 6.0e-07 60.8 157 25.5
Pp3c3_2440 Physcomitrium patens HOM05D004079 ORTHO05D007285 7.8e-07 60.5 167 22.8
Mapoly0031s0063 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.0e-06 60.1 161 24.2
PSO591G0491 Papaver somniferum HOM05D004079 ORTHO05D005437 1.0e-06 60.1 110 27.3
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 1.3e-06 59.7 147 29.9
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 1.3e-06 59.7 146 25.3
Cc04_g15850 Coffea canephora HOM05D004079 ORTHO05D005437 1.3e-06 59.7 110 27.3
Migut.J00539 Erythranthe guttata HOM05D006740 ORTHO05D008571 1.3e-06 59.7 146 25.3
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 1.3e-06 59.7 158 24.7
A08p30100 Brassica napus HOM05D004079 ORTHO05D005437 1.7e-06 59.3 107 29.0
CiPaw.08G090200 Carya illinoinensis HOM05D000424 ORTHO05D002854 1.7e-06 59.3 199 24.1
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 2.3e-06 58.9 162 24.1
EL10Ac9g21998 Beta vulgaris HOM05D006749 ORTHO05D008352 2.3e-06 58.9 155 23.2
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 3.0e-06 58.5 116 25.9
ATR0680G314 Amborella trichopoda HOM05D000424 ORTHO05D002854 3.0e-06 58.5 186 24.2
Manes.04G123300 Manihot esculenta HOM05D006749 ORTHO05D008352 3.0e-06 58.5 177 21.5
FAN04G0444 Fragaria x ananassa HOM05D000446 ORTHO05D000321 3.9e-06 58.2 209 23.0
MBI05_g00435_MAGBIO Magnolia biondii HOM05D006596 ORTHO05D008497 3.9e-06 58.2 144 27.1
Sp5g00960 Schrenkiella parvula HOM05D000424 ORTHO05D002854 3.9e-06 58.2 164 23.8
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 3.9e-06 58.2 187 24.1
Lalb_Chr15g0086291 Lupinus albus HOM05D000424 ORTHO05D000355 5.1e-06 57.8 147 28.6
Prupe.1G018400 Prunus persica HOM05D000424 ORTHO05D000355 5.1e-06 57.8 166 26.5
SEGI_31641 Sequoiadendron giganteum HOM05D000424 ORTHO05D002854 5.1e-06 57.8 131 24.4
arahy.Tifrunner.gnm1.ann1.5SK0BH Arachis hypogaea HOM05D007173 ORTHO05D009151 6.6e-06 57.4 189 26.5
arahy.Tifrunner.gnm1.ann1.M7NPSI Arachis hypogaea HOM05D000424 ORTHO05D002854 6.6e-06 57.4 209 25.4
CAN.G911.26 Capsicum annuum HOM05D006596 ORTHO05D008497 6.6e-06 57.4 174 23.0
Migut.D00625 Erythranthe guttata HOM05D000424 ORTHO05D002854 6.6e-06 57.4 203 24.1
RcHm_v2.0_Chr7g0241731 Rosa chinensis HOM05D000424 ORTHO05D002854 6.6e-06 57.4 180 23.9
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 6.6e-06 57.4 128 30.5
A10p05290 Brassica napus HOM05D007128 ORTHO05D009059 8.7e-06 57.0 147 25.2
Cc04_g03210 Coffea canephora HOM05D000424 ORTHO05D002854 8.7e-06 57.0 190 23.7
MD16G1030100 Malus domestica HOM05D000424 ORTHO05D000355 8.7e-06 57.0 98 27.6
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 8.7e-06 57.0 218 20.6
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 8.7e-06 57.0 170 23.5
SGA_v2.0_scaffold39G15152 Striga asiatica HOM05D000424 ORTHO05D000355 8.7e-06 57.0 194 24.2


User provided reference genes

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