Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 2679.8 1405 100.0
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 2402.1 1402 90.9
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 1650.6 1421 64.0
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1598.2 1420 63.7
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1583.5 1407 61.5
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1567.0 1424 61.6
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 1565.4 1424 61.0
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1562.4 1413 60.9
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1559.3 1420 60.2
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1540.4 1433 60.8
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1534.6 1403 61.0
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1534.2 1426 59.6
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1494.6 1429 59.0
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1483.4 1417 59.0
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1480.3 1417 59.0
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 1474.9 1247 64.1
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1471.8 1422 58.6
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1464.5 1241 63.4
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1464.1 1419 57.8
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1454.9 1426 57.5
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1419.1 1426 56.6
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1417.5 1286 61.0
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1407.5 1411 57.5
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1385.2 1418 55.6
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1380.9 1122 66.9
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1371.3 1228 61.5
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1369.8 1435 53.2
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1356.7 1228 60.8
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1344.3 1428 54.6
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1333.2 1436 53.1
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1324.3 1433 52.5
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1309.3 1431 52.0
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1307.7 1438 52.5
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1291.2 1448 50.8
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1280.4 1425 50.7
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1278.8 1451 50.2
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1275.0 1404 51.8
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1271.5 1235 58.1
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1271.1 1339 53.2
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1268.8 1433 50.9
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1265.8 1336 53.4
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1254.6 1411 51.5
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1245.3 1380 51.7
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1240.7 1433 50.0
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1236.1 1331 51.5
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1229.9 1397 50.5
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1225.3 1349 50.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1223.0 1347 51.1
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1222.2 1365 51.5
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1219.9 1381 50.5
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1215.3 1397 50.4
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1204.5 1450 48.4
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1203.0 1091 60.8
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1151.3 1030 61.9
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1144.8 1412 48.9
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1107.4 1380 47.8
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 0.0e+00 1104.4 1125 55.5
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1103.6 1049 58.8
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1097.0 1208 52.9
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1082.4 1255 49.2
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 5.0e-303 1045.0 1037 56.8
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 1.6e-301 1040.0 1175 50.4
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 1.5e-299 1033.5 1035 56.4
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 4.6e-296 1021.9 1437 44.2
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 2.5e-270 936.4 869 60.2
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 6.0e-264 915.2 1362 40.6
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 1.3e-261 907.5 1443 41.4
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 4.2e-257 892.5 853 58.9
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 8.8e-223 778.5 1433 37.6
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 3.4e-214 750.0 1000 46.4
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 1.9e-209 734.2 1318 37.4
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 1.8e-207 727.6 706 55.9
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 3.0e-199 700.3 713 55.8
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 9.2e-188 662.1 630 57.6
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 3.3e-185 653.7 896 44.3
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 9.2e-180 635.6 1391 32.7
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.9e-177 627.9 1344 33.9
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.5e-177 627.5 1345 33.9
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 1.5e-174 618.2 1465 32.6
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 4.7e-115 420.6 664 42.9
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.5e-100 372.5 491 45.6
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 5.7e-97 360.5 1322 27.1
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 1.7e-85 322.4 352 53.4
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 2.1e-83 315.5 362 51.4
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 2.3e-82 312.0 268 64.2
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 2.1e-70 272.3 291 54.0
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 4.4e-65 254.6 293 53.2
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 2.2e-56 225.7 201 60.7
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 6.2e-51 207.6 250 48.4
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.4e-34 153.3 120 66.7
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 1.2e-30 140.2 291 35.7
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 1.9e-28 132.9 104 66.3
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 2.8e-27 129.0 106 62.3
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 3.1e-18 99.0 173 40.5
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 5.7e-12 78.2 118 39.8
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 9.1e-10 70.9 277 25.3
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 4.2e-07 62.0 87 44.8
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 1.6e-06 60.1 102 38.2


User provided reference genes

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