Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.5e-153 545.4 276 100.0
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 2.4e-148 528.9 276 96.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 5.2e-111 404.8 225 88.9
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 5.2e-111 404.8 225 89.3
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.2e-109 399.4 227 87.7
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 7.0e-108 394.4 223 87.4
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 7.8e-107 391.0 226 86.7
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.7e-106 389.8 225 86.2
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.3e-106 389.4 221 86.9
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 3.0e-106 389.0 223 86.5
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 5.0e-106 388.3 224 85.7
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 8.6e-106 387.5 223 85.7
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 1.1e-105 387.1 226 86.3
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 5.6e-105 384.8 218 86.7
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 5.6e-105 384.8 262 75.2
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 5.6e-105 384.8 221 86.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 4.7e-104 381.7 224 84.8
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 8.0e-104 380.9 222 85.6
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.1e-103 380.6 223 84.8
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 4.0e-103 378.6 217 86.6
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 6.8e-103 377.9 216 87.5
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 8.9e-103 377.5 222 82.4
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 1.5e-102 376.7 213 85.4
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 1.5e-102 376.7 223 83.4
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.5e-102 376.7 221 83.3
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.0e-102 376.3 225 83.1
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 2.6e-102 375.9 216 85.6
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 7.5e-102 374.4 221 84.2
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.3e-101 373.6 214 86.4
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 1.7e-101 373.2 213 85.4
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 1.7e-101 373.2 222 83.3
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-101 372.9 222 83.3
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 2.2e-101 372.9 222 83.3
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 2.9e-101 372.5 215 85.6
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 3.7e-101 372.1 216 83.8
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 4.9e-101 371.7 221 83.3
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 4.9e-101 371.7 223 84.3
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 6.4e-101 371.3 212 85.8
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.1e-100 370.5 225 81.3
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.1e-100 370.5 221 82.8
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 1.1e-100 370.5 213 84.5
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 1.4e-100 370.2 221 81.9
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 1.9e-100 369.8 223 80.3
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 1.9e-100 369.8 223 80.3
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.9e-100 369.8 221 83.7
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 1.9e-100 369.8 216 82.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 2.4e-100 369.4 221 83.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.4e-100 369.4 210 85.2
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 3.2e-100 369.0 216 82.9
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 3.2e-100 369.0 221 82.4
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 4.1e-100 368.6 215 84.2
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 5.4e-100 368.2 217 83.9
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 9.2e-100 367.5 216 81.9
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 9.2e-100 367.5 217 84.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 9.2e-100 367.5 221 84.6
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 9.2e-100 367.5 215 83.7
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.2e-99 367.1 216 81.9
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.2e-99 367.1 216 81.9
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 2.0e-99 366.3 225 79.1
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.7e-99 365.9 231 77.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 2.7e-99 365.9 216 82.9
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 2.7e-99 365.9 216 81.9
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 3.5e-99 365.5 216 81.5
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 7.8e-99 364.4 216 82.4
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.0e-98 364.0 221 81.4
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.0e-98 364.0 216 81.9
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 1.3e-98 363.6 233 76.0
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.7e-98 363.2 227 80.6
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 3.0e-98 362.5 216 80.6
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 3.9e-98 362.1 237 77.2
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 5.0e-98 361.7 218 81.7
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 6.6e-98 361.3 216 81.9
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 8.6e-98 360.9 225 78.7
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 8.6e-98 360.9 221 80.1
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 4.3e-97 358.6 219 81.3
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 9.5e-97 357.5 218 81.7
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 9.5e-97 357.5 218 79.8
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 1.6e-96 356.7 215 82.3
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 1.5e-94 350.1 221 76.5
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 2.6e-94 349.4 266 68.4
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 2.6e-94 349.4 266 68.4
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 5.8e-94 348.2 215 80.0
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 1.3e-93 347.1 228 78.9
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 2.2e-93 346.3 216 77.8
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 3.7e-93 345.5 223 77.1
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 8.3e-93 344.4 216 76.4
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 1.9e-92 343.2 232 74.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 5.4e-92 341.7 209 79.9
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 5.4e-92 341.7 217 78.8
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 7.1e-92 341.3 218 76.1
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 9.2e-92 340.9 216 75.9
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.6e-91 340.1 210 77.6
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 2.1e-91 339.7 216 75.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 2.7e-91 339.3 218 76.1
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 2.7e-91 339.3 216 75.5
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 2.7e-91 339.3 216 75.5
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 3.5e-91 339.0 224 73.7
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 6.0e-91 338.2 216 75.0
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 6.0e-91 338.2 216 75.0
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 7.8e-91 337.8 221 73.8
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 5.1e-90 335.1 216 75.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 5.1e-90 335.1 216 75.9
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.5e-89 333.6 221 74.7
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.9e-89 333.2 227 75.3
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.2e-88 330.5 187 86.6
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 3.9e-82 308.9 223 67.7
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 5.1e-82 308.5 213 70.9
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 1.6e-80 303.5 215 68.8
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 1.4e-79 300.4 211 70.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 1.8e-79 300.1 216 67.6
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 2.6e-78 296.2 213 68.1
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 7.6e-78 294.7 220 66.8
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 7.6e-78 294.7 182 79.1
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 8.4e-77 291.2 212 66.0
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 2.3e-74 283.1 180 75.0
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 3.0e-66 256.1 217 61.3
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 4.0e-63 245.7 141 85.8
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 6.0e-59 231.9 150 76.0
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 5.1e-58 228.8 128 87.5
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.5e-57 226.5 232 50.4
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.3e-57 225.7 125 88.0
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 2.1e-56 223.4 132 84.8
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 1.2e-54 217.6 122 86.9
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 5.1e-50 202.2 151 68.9
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 7.9e-43 178.3 124 70.2
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.5e-41 173.3 129 70.5
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 4.3e-41 172.6 103 79.6
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 7.4e-41 171.8 115 73.0
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 4.8e-40 169.1 95 84.2
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.0e-37 161.4 89 89.9
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 6.7e-34 148.7 95 77.9
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 4.4e-33 146.0 91 74.7
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.3e-32 142.1 164 45.1
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 3.5e-30 136.3 202 40.6
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 1.1e-28 131.3 94 68.1
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 1.4e-28 131.0 189 38.1
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 1.9e-28 130.6 77 80.5
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 2.1e-27 127.1 200 40.0
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 4.7e-27 125.9 181 38.7
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 6.1e-27 125.6 189 37.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 1.8e-26 124.0 219 35.2
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 2.8e-24 116.7 198 36.9
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 8.2e-24 115.2 73 76.7
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 3.1e-23 113.2 88 67.0
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 3.1e-23 113.2 68 77.9
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 1.2e-22 111.3 63 82.5
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 1.7e-21 107.5 71 77.5
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 2.2e-21 107.1 64 76.6
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 3.8e-21 106.3 96 61.5
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 8.5e-21 105.1 194 35.1
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 1.1e-20 104.8 207 34.3
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 1.5e-20 104.4 63 81.0
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 2.3e-18 97.1 170 32.4
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 3.0e-18 96.7 58 81.0
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 5.2e-18 95.9 69 66.7
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 1.3e-16 91.3 59 78.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 2.8e-16 90.1 59 76.3
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 6.3e-16 89.0 68 61.8
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 1.8e-15 87.4 46 82.6
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 3.8e-13 79.7 87 54.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 1.1e-12 78.2 57 70.2
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 2.5e-12 77.0 68 54.4
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 3.2e-12 76.6 83 49.4
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 4.2e-12 76.3 65 55.4
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 5.5e-12 75.9 64 56.2
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.6e-11 74.3 59 59.3
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 3.4e-09 66.6 39 82.1
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 3.4e-09 66.6 57 56.1
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 9.8e-09 65.1 48 64.6


User provided reference genes

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