Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.0e-102 375.2 190 100.0
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.0e-86 323.6 190 86.3
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 5.0e-81 304.7 190 82.6
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.7e-79 298.1 192 82.8
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 3.5e-66 255.4 190 70.5
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 5.6e-64 248.1 197 71.6
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 7.3e-64 247.7 190 69.5
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 6.2e-63 244.6 196 70.9
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.1e-62 242.3 194 68.6
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 2.6e-61 239.2 190 70.5
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 4.4e-61 238.4 190 69.5
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.9e-60 235.7 192 69.3
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 8.4e-60 234.2 192 67.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.2e-58 230.3 193 66.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 1.6e-58 229.9 194 64.4
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 4.6e-58 228.4 201 65.7
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 7.8e-58 227.6 192 66.7
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.0e-57 227.3 197 67.0
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.3e-57 226.9 190 66.8
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 3.9e-57 225.3 192 63.0
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 4.3e-56 221.9 193 63.2
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 5.6e-56 221.5 191 65.4
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 9.6e-56 220.7 202 64.9
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.8e-55 219.2 195 64.6
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 2.8e-55 219.2 201 63.2
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 2.8e-55 219.2 191 62.8
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 6.2e-55 218.0 201 63.2
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 1.1e-54 217.2 194 61.9
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.8e-54 216.5 191 64.9
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.8e-54 216.5 191 64.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 6.9e-54 214.5 192 64.6
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.6e-53 212.6 194 62.9
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 3.4e-53 212.2 190 62.6
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.4e-53 212.2 195 60.0
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-52 210.3 190 62.1
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 6.4e-52 208.0 204 60.8
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.4e-51 206.1 190 61.1
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.4e-51 206.1 190 61.1
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.4e-51 206.1 190 61.1
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 1.2e-50 203.8 191 60.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.3e-49 200.3 190 60.0
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 1.7e-49 199.9 195 60.0
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.7e-49 199.9 201 54.7
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.3e-49 199.5 192 59.4
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 3.9e-49 198.7 185 61.1
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 3.9e-49 198.7 190 60.0
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.1e-48 197.2 197 57.9
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.3e-47 193.7 194 59.8
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.8e-47 191.8 190 58.9
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 4.8e-47 191.8 171 62.6
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 6.2e-47 191.4 191 56.5
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 6.2e-47 191.4 210 55.2
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.1e-46 190.7 192 60.4
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.4e-46 190.3 190 57.4
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.8e-46 189.9 194 59.3
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 2.4e-46 189.5 195 58.5
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 4.0e-46 188.7 193 57.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.5e-45 186.8 191 58.1
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 9.9e-45 184.1 196 58.2
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.7e-44 183.3 192 56.8
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.1e-43 180.6 191 56.5
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.9e-43 179.9 194 55.7
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 3.2e-43 179.1 196 54.1
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.2e-43 179.1 191 56.0
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 3.2e-43 179.1 195 53.8
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.2e-43 179.1 192 56.8
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 9.3e-43 177.6 191 55.5
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.2e-42 177.2 190 55.3
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.1e-42 176.4 193 55.4
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.6e-42 175.3 192 53.6
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 4.6e-42 175.3 192 54.2
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 4.6e-42 175.3 191 55.5
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.9e-41 172.2 214 51.9
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 8.7e-41 171.0 189 55.0
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 9.6e-40 167.5 192 51.0
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.3e-39 167.2 195 54.4
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 2.8e-39 166.0 192 52.6
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.8e-39 165.2 192 51.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 8.1e-39 164.5 192 53.6
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.1e-39 164.5 192 51.6
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 2.4e-38 162.9 193 51.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.9e-38 161.4 191 50.8
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.5e-37 160.2 209 53.6
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 2.0e-37 159.8 191 50.8
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 2.0e-37 159.8 191 50.8
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.0e-37 159.8 192 53.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 3.4e-37 159.1 191 50.8
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.4e-37 159.1 208 51.9
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.4e-37 159.1 198 53.5
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 4.5e-37 158.7 192 50.5
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 4.5e-37 158.7 192 50.5
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 1.0e-36 157.5 192 52.6
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 2.2e-36 156.4 206 49.0
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 3.8e-36 155.6 198 49.5
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.1e-35 154.1 194 48.5
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.4e-35 153.7 186 48.4
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.2e-35 152.5 190 52.1
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 9.3e-35 151.0 198 46.5
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.6e-34 150.2 210 51.0
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.1e-34 149.8 201 52.2
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 2.1e-34 149.8 195 53.8
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 3.5e-34 149.1 194 52.1
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 6.0e-34 148.3 192 50.0
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 7.9e-34 147.9 196 50.0
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 7.9e-34 147.9 195 51.3
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 1.0e-33 147.5 123 69.9
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.3e-33 147.1 190 49.5
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.8e-33 146.7 208 48.1
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-33 146.7 195 52.8
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 1.8e-33 146.7 195 52.8
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 1.8e-33 146.7 195 52.8
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.8e-33 146.7 195 51.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.8e-33 146.7 191 51.8
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 3.9e-33 145.6 196 49.5
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 3.9e-33 145.6 203 50.2
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 5.1e-33 145.2 203 47.3
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 5.1e-33 145.2 198 48.0
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 3.3e-32 142.5 226 47.8
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.3e-31 140.6 195 47.7
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 3.7e-31 139.0 223 46.2
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 3.7e-31 139.0 223 46.2
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 4.8e-31 138.7 195 42.1
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 1.5e-29 133.7 226 45.6
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 5.9e-29 131.7 214 45.3
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.0e-28 131.0 212 44.8
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.1e-27 127.5 205 45.9
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.1e-27 127.5 191 44.5
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 7.2e-27 124.8 191 46.1
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.7e-26 122.9 190 41.1
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 1.9e-24 116.7 207 42.5
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 1.9e-24 116.7 159 47.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 3.7e-23 112.5 191 42.9
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.4e-22 110.5 194 37.6
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 3.1e-22 109.4 91 65.9
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 9.0e-22 107.8 91 63.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 3.4e-21 105.9 206 39.3
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.5e-20 101.7 169 39.6
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.9e-19 100.1 193 38.9
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 4.2e-19 99.0 93 60.2
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 7.2e-19 98.2 184 37.5
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 2.2e-15 86.7 180 37.8
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.8e-14 83.6 80 56.2
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 4.1e-14 82.4 60 68.3
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 9.4e-11 71.2 45 71.1
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 3.6e-10 69.3 191 33.0
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 6.1e-10 68.6 187 33.7
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 3.9e-09 65.9 190 32.6
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 3.9e-09 65.9 193 34.2
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 8.8e-09 64.7 187 31.6
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 2.0e-08 63.5 189 32.3
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 2.6e-08 63.2 160 37.5
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 3.3e-08 62.8 190 28.9
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 4.4e-08 62.4 188 30.3
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 9.7e-08 61.2 195 31.8
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 3.7e-07 59.3 187 28.3
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 3.7e-07 59.3 187 29.9
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 1.4e-06 57.4 188 31.4
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 3.1e-06 56.2 188 25.5
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 4.1e-06 55.8 190 28.4
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 4.1e-06 55.8 188 32.4
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 5.3e-06 55.5 188 28.7
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 5.3e-06 55.5 188 32.4
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 5.3e-06 55.5 188 32.4
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 7.0e-06 55.1 194 26.3
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 7.0e-06 55.1 188 29.8


User provided reference genes

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