Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 3.4e-77 292.0 190 100.0
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 1.7e-57 226.5 190 84.7
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 1.0e-49 200.7 190 65.8
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 8.4e-36 154.5 198 58.1
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 1.2e-26 124.0 192 54.7
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 2.3e-25 119.8 210 46.2
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 6.7e-25 118.2 197 56.9
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 8.7e-25 117.9 78 74.4
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 3.3e-24 115.9 66 80.3
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 9.7e-24 114.4 195 47.2
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 2.8e-23 112.8 210 44.8
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 2.8e-23 112.8 210 44.3
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 2.8e-23 112.8 207 48.3
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.8e-22 110.2 210 43.8
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 4.1e-22 109.0 78 70.5
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 6.9e-22 108.2 194 49.0
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 6.9e-22 108.2 76 72.4
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 3.4e-21 105.9 197 46.7
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 3.4e-21 105.9 207 51.2
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 4.5e-21 105.5 194 49.0
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 7.7e-21 104.8 76 68.4
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 2.9e-20 102.8 213 44.1
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 2.9e-20 102.8 217 44.2
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 1.4e-19 100.5 76 69.7
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.4e-19 100.5 76 69.7
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.4e-19 100.5 76 69.7
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 1.4e-19 100.5 215 43.3
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 4.2e-19 99.0 78 64.1
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 4.2e-19 99.0 206 46.1
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 7.2e-19 98.2 190 49.5
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 7.2e-19 98.2 76 68.4
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 2.1e-18 96.7 201 43.3
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 2.7e-18 96.3 76 64.5
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 6.1e-18 95.1 73 65.8
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.0e-17 94.4 74 67.6
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 3.0e-17 92.8 201 44.3
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 3.0e-17 92.8 205 47.3
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 5.1e-17 92.0 75 58.7
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 6.7e-17 91.7 207 44.0
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 3.3e-16 89.4 185 42.7
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 4.3e-16 89.0 181 45.9
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 4.3e-16 89.0 78 60.3
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 9.7e-16 87.8 121 56.2
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 2.8e-15 86.3 118 50.0
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 4.8e-15 85.5 121 51.2
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 6.3e-15 85.1 192 40.6
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 1.1e-14 84.3 193 41.5
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 1.4e-14 84.0 200 43.0
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 1.8e-14 83.6 212 36.3
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 2.4e-14 83.2 194 44.8
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 5.3e-14 82.0 206 40.3
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 6.9e-14 81.6 103 57.3
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 2.0e-13 80.1 194 43.8
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 2.6e-13 79.7 196 33.7
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 3.4e-13 79.3 194 49.5
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 4.5e-13 79.0 200 40.5
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 1.0e-12 77.8 78 56.4
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 1.7e-12 77.0 194 40.7
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 2.2e-12 76.6 199 40.7
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 2.2e-12 76.6 116 54.3
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 2.2e-12 76.6 201 40.8
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 2.9e-12 76.3 60 65.0
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 2.9e-12 76.3 116 53.4
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 3.8e-12 75.9 72 62.5
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 5.0e-12 75.5 77 51.9
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 8.5e-12 74.7 210 41.0
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 3.2e-11 72.8 77 54.5
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 9.4e-11 71.2 68 57.4
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 2.7e-10 69.7 185 35.1
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 3.6e-10 69.3 72 54.2
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 1.0e-09 67.8 208 39.9
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 1.8e-09 67.0 181 42.0
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 2.3e-09 66.6 208 38.0
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 3.0e-09 66.2 113 48.7
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 3.9e-09 65.9 198 36.9
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 5.1e-09 65.5 78 46.2
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 6.7e-09 65.1 197 37.6
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 8.8e-09 64.7 71 59.2
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 8.8e-09 64.7 212 49.1
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 2.0e-08 63.5 53 54.7
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 3.3e-08 62.8 211 43.1
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 5.7e-08 62.0 67 58.2
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 7.4e-08 61.6 67 47.8
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 9.7e-08 61.2 64 54.7
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 1.7e-07 60.5 113 51.3
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 2.8e-07 59.7 90 57.8
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 6.3e-07 58.5 60 51.7
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 8.2e-07 58.2 213 37.1
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 8.2e-07 58.2 213 37.1
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 8.2e-07 58.2 112 38.4
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 1.4e-06 57.4 115 56.5
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 2.4e-06 56.6 174 36.2
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 4.1e-06 55.8 212 40.1
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 4.1e-06 55.8 76 42.1
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 5.3e-06 55.5 208 38.9
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 7.0e-06 55.1 214 40.2
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 9.1e-06 54.7 113 50.4


User provided reference genes

Program Settings