Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.7e-183 646.0 352 100.0
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 2.8e-149 532.3 352 85.2
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 3.6e-64 249.6 392 46.4
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 2.8e-61 240.0 376 45.2
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.6e-59 234.2 366 44.8
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.6e-59 234.2 390 46.7
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 2.7e-56 223.4 384 46.1
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 8.0e-56 221.9 379 46.4
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 6.7e-55 218.8 388 43.8
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 1.1e-52 211.5 339 47.8
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 7.0e-52 208.8 381 44.4
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 1.2e-51 208.0 367 47.7
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 4.5e-51 206.1 259 50.2
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 3.8e-50 203.0 297 44.8
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 8.5e-50 201.8 384 40.9
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.1e-49 201.4 383 42.8
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 1.5e-49 201.1 382 45.0
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.5e-49 200.3 382 45.0
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 8.0e-48 195.3 375 45.3
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 4.0e-47 193.0 392 39.3
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 3.7e-45 186.4 372 43.0
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 7.0e-44 182.2 334 41.3
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 9.1e-44 181.8 250 50.0
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 3.5e-43 179.9 356 43.5
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 7.7e-43 178.7 372 43.5
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 2.2e-42 177.2 379 40.9
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.2e-42 177.2 394 40.4
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 2.9e-42 176.8 337 42.7
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 5.0e-42 176.0 336 42.6
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 1.9e-41 174.1 338 41.7
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 3.2e-41 173.3 363 36.1
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 3.2e-41 173.3 384 43.5
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 5.5e-41 172.6 391 35.8
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 7.2e-41 172.2 379 39.6
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 7.2e-41 172.2 379 39.6
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.6e-40 171.0 383 40.7
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 3.6e-40 169.9 327 37.9
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.0e-39 168.3 382 40.6
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 1.8e-39 167.5 379 38.8
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 8.8e-39 165.2 323 39.0
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 1.5e-38 164.5 363 41.6
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.5e-38 164.5 329 43.8
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 2.0e-38 164.1 384 38.8
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 2.6e-38 163.7 377 38.5
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 3.4e-38 163.3 378 39.9
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 3.4e-38 163.3 404 35.4
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 5.7e-38 162.5 370 40.8
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 7.5e-38 162.2 387 41.9
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 2.8e-37 160.2 363 36.6
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 1.4e-36 157.9 292 40.1
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 1.4e-36 157.9 371 42.3
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 2.4e-36 157.1 369 38.8
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 3.1e-36 156.8 362 41.7
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 3.1e-36 156.8 366 41.5
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 4.1e-36 156.4 380 37.9
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 4.1e-36 156.4 377 38.5
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 4.1e-36 156.4 393 33.1
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 5.4e-36 156.0 358 42.2
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 5.4e-36 156.0 365 40.8
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 5.4e-36 156.0 365 40.3
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 9.2e-36 155.2 369 39.8
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 2.7e-35 153.7 373 37.0
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 3.5e-35 153.3 379 34.8
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 3.5e-35 153.3 390 39.5
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 4.5e-35 152.9 365 40.5
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 5.9e-35 152.5 329 41.6
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 1.0e-34 151.8 321 42.7
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 1.3e-34 151.4 344 36.9
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 1.3e-34 151.4 350 37.7
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 2.9e-34 150.2 382 36.9
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 2.9e-34 150.2 350 37.4
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 5.0e-34 149.4 323 38.4
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 5.0e-34 149.4 370 38.4
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 8.6e-34 148.7 326 38.0
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 8.6e-34 148.7 232 43.1
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 1.5e-33 147.9 360 37.2
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 1.9e-33 147.5 314 36.6
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 1.9e-33 147.5 354 41.2
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 4.3e-33 146.4 365 41.1
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 5.6e-33 146.0 398 35.4
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 7.3e-33 145.6 243 41.2
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 9.5e-33 145.2 358 38.5
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 3.6e-32 143.3 370 38.6
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 3.6e-32 143.3 325 36.3
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 6.1e-32 142.5 356 39.0
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 8.0e-32 142.1 355 37.7
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.0e-31 141.7 342 35.4
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 1.0e-31 141.7 359 39.3
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 6.8e-31 139.0 321 36.8
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.2e-30 138.3 372 36.3
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 2.0e-30 137.5 314 43.6
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 2.0e-30 137.5 324 35.5
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 2.6e-30 137.1 316 44.0
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 4.4e-30 136.3 285 40.0
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 9.8e-30 135.2 383 37.6
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 3.7e-29 133.3 365 32.1
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 6.4e-29 132.5 279 44.8
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 1.8e-28 131.0 353 39.9
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 9.2e-28 128.6 294 43.5
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 5.9e-27 125.9 347 37.8
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 7.8e-27 125.6 370 38.1
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 1.5e-25 121.3 306 39.2
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 3.6e-24 116.7 384 31.2
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 6.2e-24 115.9 194 42.3
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 1.0e-23 115.2 355 37.2
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.8e-23 114.4 90 62.2
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 1.8e-23 114.4 91 64.8
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 3.1e-23 113.6 102 56.9
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 6.8e-23 112.5 310 39.0
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 2.0e-22 110.9 289 42.2
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 3.0e-18 97.1 215 33.5
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 8.6e-18 95.5 399 31.3
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 5.2e-15 86.3 326 33.4
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.2e-14 85.1 97 50.5
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 2.0e-14 84.3 339 27.7
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 3.2e-12 77.0 103 47.6
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.3e-10 71.6 48 64.6
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.2e-08 65.1 325 31.4
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.2e-08 65.1 325 32.3
arahy.Tifrunner.gnm1.ann1.V4J88K Arachis hypogaea HOM05D005773 ORTHO05D006930 6.2e-08 62.8 84 51.2
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 8.1e-08 62.4 44 61.4
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 4.0e-07 60.1 150 46.7
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 1.5e-06 58.2 111 40.5
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 4.4e-06 56.6 109 31.2
SMO356G0556 Selaginella moellendorffii HOM05D005773 ORTHO05D006930 5.8e-06 56.2 88 36.4


User provided reference genes

Program Settings