Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.1e-103 379.0 191 100.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-90 336.7 191 90.6
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 9.5e-88 327.0 191 89.0
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 2.9e-84 315.5 211 80.6
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.6e-82 309.7 211 80.1
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 3.1e-78 295.4 192 77.6
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 8.9e-78 293.9 191 76.4
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.7e-73 277.3 196 70.9
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.1e-72 276.9 195 72.3
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 4.3e-72 275.0 192 71.9
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 7.3e-72 274.2 193 72.0
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 7.3e-72 274.2 193 72.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.6e-71 273.1 191 71.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.1e-71 272.7 191 70.7
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.8e-71 271.6 190 70.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 6.2e-71 271.2 196 70.9
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.4e-70 270.0 191 70.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 1.4e-70 270.0 191 68.6
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 5.3e-70 268.1 191 70.2
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 5.3e-70 268.1 191 69.6
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 2.6e-69 265.8 192 68.8
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 2.6e-69 265.8 192 68.8
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.6e-69 265.8 201 68.2
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 3.4e-69 265.4 192 69.3
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.4e-69 265.4 190 70.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 4.5e-69 265.0 193 69.4
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 5.8e-69 264.6 195 70.8
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 7.6e-69 264.2 191 69.6
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.3e-68 263.5 192 69.3
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.3e-68 263.5 189 67.7
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 1.7e-68 263.1 200 69.0
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 3.8e-68 261.9 191 70.2
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.8e-68 261.9 191 69.6
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 4.9e-68 261.5 197 67.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 6.4e-68 261.2 192 68.8
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 6.4e-68 261.2 198 65.7
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 6.4e-68 261.2 191 69.6
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 6.4e-68 261.2 191 69.6
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.1e-67 260.4 199 68.3
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.9e-67 259.6 198 66.7
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 5.4e-67 258.1 200 68.0
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 5.4e-67 258.1 194 67.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.4e-67 258.1 193 66.8
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 5.4e-67 258.1 191 67.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 5.4e-67 258.1 191 68.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 7.1e-67 257.7 200 68.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 7.1e-67 257.7 204 64.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 2.7e-66 255.8 191 67.0
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 3.5e-66 255.4 199 67.3
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 3.5e-66 255.4 192 68.2
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 4.6e-66 255.0 193 67.4
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 6.0e-66 254.6 192 68.8
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.3e-65 253.4 191 65.4
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.3e-65 252.7 192 67.7
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.0e-65 252.3 193 65.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.9e-65 251.9 192 65.1
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.9e-65 251.9 190 66.8
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.9e-65 251.9 190 66.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 6.7e-65 251.1 191 64.4
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.7e-65 250.8 189 65.1
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 2.5e-64 249.2 193 66.3
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.3e-64 248.8 192 64.1
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 4.3e-64 248.4 197 65.5
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 4.3e-64 248.4 191 64.9
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.6e-64 248.1 193 63.7
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 9.6e-64 247.3 194 63.9
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.3e-63 246.9 192 66.7
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.3e-63 246.9 190 65.3
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.6e-63 246.5 187 69.0
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.1e-63 246.1 191 64.4
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.6e-63 245.4 191 64.4
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.1e-63 244.2 190 62.1
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 8.1e-63 244.2 193 64.2
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.4e-62 243.4 195 64.1
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 4.0e-62 241.9 190 66.3
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-60 236.5 176 65.3
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.4e-59 233.4 214 57.5
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 3.2e-59 232.3 211 58.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 5.5e-59 231.5 188 63.3
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 9.3e-59 230.7 188 63.3
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 9.3e-59 230.7 193 64.8
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 3.5e-58 228.8 177 65.0
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.3e-57 226.1 184 63.6
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.3e-57 226.1 185 63.2
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.0e-57 225.7 152 72.4
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 5.1e-57 224.9 188 61.7
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 5.1e-57 224.9 190 64.2
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.3e-56 222.2 191 62.8
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 3.3e-56 222.2 191 60.7
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 4.3e-56 221.9 189 60.3
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 7.4e-56 221.1 170 64.7
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.3e-55 220.3 191 61.3
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.4e-54 216.9 169 62.7
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.4e-54 216.9 193 59.6
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 2.0e-53 213.0 191 57.6
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.6e-53 212.6 193 58.5
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.3e-52 210.3 293 45.4
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 4.9e-52 208.4 191 61.3
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 4.9e-52 208.4 193 57.0
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 6.5e-52 208.0 191 55.5
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 8.4e-52 207.6 193 58.0
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 7.1e-51 204.5 186 57.5
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 7.1e-51 204.5 192 57.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 9.3e-51 204.1 184 58.7
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.6e-50 203.4 192 56.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.1e-50 203.0 191 58.1
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.7e-50 202.6 267 47.6
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 3.5e-50 202.2 191 55.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 3.5e-50 202.2 191 55.5
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 4.6e-50 201.8 191 55.5
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.3e-49 200.3 191 58.1
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.3e-49 200.3 191 55.0
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 2.5e-48 196.1 194 55.7
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 4.3e-48 195.3 190 56.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.6e-47 193.4 154 65.6
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.8e-47 191.8 183 55.2
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 6.3e-47 191.4 192 53.6
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 5.3e-46 188.3 193 54.4
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.2e-45 187.2 193 53.4
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.0e-44 184.1 189 55.6
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.4e-43 180.3 191 52.4
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 2.7e-42 176.0 185 50.8
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.1e-41 171.8 173 56.1
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.1e-41 171.8 173 56.1
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 4.1e-38 162.2 186 51.1
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 2.0e-37 159.8 168 53.0
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 1.9e-35 153.3 119 61.3
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 3.2e-35 152.5 160 51.2
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 9.4e-35 151.0 100 74.0
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.6e-34 149.1 182 49.5
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.0e-33 147.5 159 46.5
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.0e-33 147.5 97 74.2
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 5.0e-28 128.6 99 66.7
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 2.5e-27 126.3 117 54.7
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.5e-27 126.3 151 46.4
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.2e-26 124.0 130 48.5
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 6.7e-25 118.2 117 55.6
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 2.0e-24 116.7 105 56.2
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.0e-24 116.7 104 60.6
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 2.0e-24 116.7 115 53.0
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.3e-24 115.9 95 54.7
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 6.3e-23 111.7 137 48.9
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.3e-22 108.6 97 58.8
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.0e-21 106.7 96 58.3
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.5e-21 105.9 116 52.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 5.9e-21 105.1 91 60.4
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.0e-20 104.4 116 52.6
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 8.5e-20 101.3 115 44.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 1.3e-15 87.4 123 40.7
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 5.3e-14 82.0 65 63.1
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.5e-13 79.0 113 40.7
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.3e-12 77.4 55 65.5
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 8.5e-12 74.7 65 60.0
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 2.5e-11 73.2 97 46.4
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 8.0e-10 68.2 56 64.3
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 1.5e-08 63.9 66 56.1
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 2.2e-07 60.1 62 53.2
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.4e-06 57.4 97 40.2


User provided reference genes

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