Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.3e-86 321.6 158 100.0
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 3.2e-73 278.5 158 88.6
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 3.4e-67 258.5 159 81.1
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.7e-61 238.4 159 78.0
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 4.2e-57 224.9 156 73.7
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.8e-55 219.5 156 71.8
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.8e-55 219.5 157 68.8
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 4.0e-55 218.4 156 71.8
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 9.7e-54 213.8 159 69.8
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.3e-53 213.4 159 69.8
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.8e-52 209.5 160 66.9
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.8e-52 209.5 161 68.9
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.8e-52 209.5 164 67.1
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.3e-52 208.0 160 66.2
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 1.0e-50 203.8 154 69.5
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.3e-50 203.4 163 64.4
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.8e-50 201.8 159 65.4
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 8.5e-50 200.7 156 66.0
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 7.2e-49 197.6 163 63.8
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 7.2e-49 197.6 156 66.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.2e-49 197.6 162 64.2
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 9.4e-49 197.2 149 67.8
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.6e-48 195.3 124 75.0
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 6.1e-48 194.5 159 66.0
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 8.0e-48 194.1 154 65.6
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.0e-47 191.8 162 60.5
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.2e-46 190.3 165 61.8
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.4e-46 188.7 138 68.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 5.7e-46 188.0 146 66.4
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 3.1e-44 182.2 159 58.5
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.2e-43 180.3 141 64.5
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.6e-43 179.9 137 66.4
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.0e-43 179.5 159 58.5
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.7e-43 179.1 155 59.4
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 5.9e-43 177.9 157 63.7
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.7e-43 177.6 162 57.4
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 8.5e-42 174.1 158 58.2
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 8.5e-42 174.1 158 58.2
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.5e-41 173.3 160 56.9
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.9e-41 172.9 159 61.0
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 1.9e-41 172.9 126 69.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.9e-41 172.9 163 60.7
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 2.5e-41 172.6 126 69.0
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.5e-41 172.6 163 57.7
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.2e-41 172.2 143 61.5
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 7.2e-41 171.0 141 62.4
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 2.7e-40 169.1 176 53.4
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 8.0e-40 167.5 146 60.3
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 1.0e-39 167.2 158 58.2
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.0e-39 167.2 159 56.6
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.4e-39 166.8 150 60.0
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 8.8e-39 164.1 150 60.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 7.5e-38 161.0 147 59.2
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 9.8e-38 160.6 136 56.6
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 9.8e-38 160.6 168 52.4
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.7e-37 159.8 148 59.5
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.2e-37 159.5 150 57.3
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 2.8e-37 159.1 157 53.5
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 8.3e-37 157.5 170 50.6
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 1.1e-36 157.1 170 50.6
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.4e-36 156.8 146 56.2
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.8e-36 156.4 137 60.6
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.8e-36 156.4 142 57.7
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.1e-36 155.6 149 59.1
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 4.1e-36 155.2 151 54.3
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.7e-35 152.5 101 71.3
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.3e-34 150.2 162 48.8
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 1.3e-34 150.2 157 57.3
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.7e-34 149.8 127 55.9
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.9e-33 146.4 141 56.7
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.9e-33 146.4 150 54.7
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.5e-33 146.0 143 51.0
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.5e-33 146.0 153 52.3
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 9.5e-33 144.1 163 49.1
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 4.7e-32 141.7 156 49.4
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.8e-31 139.8 143 53.1
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.2e-30 137.1 130 53.8
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 2.0e-30 136.3 144 52.1
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 4.4e-30 135.2 141 51.8
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 9.8e-30 134.0 145 51.0
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.3e-29 133.7 137 49.6
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.3e-29 133.7 118 54.2
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 3.7e-29 132.1 137 55.5
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 4.9e-29 131.7 115 63.5
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 4.9e-29 131.7 139 51.8
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 6.4e-29 131.3 146 49.3
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 8.3e-29 131.0 151 49.0
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.4e-28 130.2 146 48.6
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.8e-28 129.8 150 50.0
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 3.2e-28 129.0 130 52.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 4.1e-28 128.6 92 65.2
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.6e-27 126.7 161 45.3
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 2.0e-27 126.3 150 48.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.0e-27 126.3 161 45.3
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.0e-27 126.3 144 51.4
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 3.5e-27 125.6 129 54.3
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-26 123.6 154 48.7
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 3.9e-26 122.1 132 52.3
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 6.6e-26 121.3 134 51.5
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 6.6e-26 121.3 134 51.5
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 1.1e-25 120.6 132 51.5
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.1e-25 120.6 146 50.7
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 1.1e-25 120.6 145 50.3
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.5e-25 120.2 132 51.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 1.5e-25 120.2 130 50.0
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 1.9e-25 119.8 153 47.1
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.9e-25 119.8 131 49.6
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.6e-24 116.7 151 45.7
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 2.8e-24 115.9 87 60.9
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.6e-24 115.5 136 48.5
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 2.3e-23 112.8 131 45.8
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 5.2e-23 111.7 120 50.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.2e-22 110.5 92 55.4
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.5e-22 110.2 145 42.8
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 5.8e-22 108.2 142 48.6
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.5e-22 107.8 142 43.7
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.7e-21 106.7 142 47.9
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.7e-21 106.7 142 47.9
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.7e-21 106.7 142 47.9
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.7e-21 106.7 142 47.2
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.6e-19 100.1 146 45.2
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 2.0e-19 99.8 141 44.7
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.5e-19 99.0 141 41.1
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 7.8e-19 97.8 89 51.7
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 2.3e-18 96.3 137 42.3
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 6.6e-18 94.7 81 70.4
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 8.6e-18 94.4 142 45.1
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.1e-17 94.0 116 44.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.2e-16 90.5 64 70.3
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 1.2e-16 90.5 146 41.1
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 1.6e-16 90.1 139 41.7
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.8e-16 89.4 166 36.1
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 6.2e-16 88.2 53 67.9
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.1e-15 87.4 142 44.4
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.1e-15 85.9 141 38.3
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.0e-14 83.2 130 41.5
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.4e-12 77.0 141 41.8
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 7.1e-12 74.7 145 33.1
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 1.3e-10 70.5 167 29.9
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 2.5e-09 66.2 48 60.4
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.5e-09 66.2 86 45.3
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 4.3e-09 65.5 48 58.3


User provided reference genes

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