Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 0.0e+00 1228.4 626 100.0
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.1e-309 1065.1 602 91.2
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 6.5e-234 814.3 617 69.5
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.4e-233 813.1 618 69.4
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 1.6e-229 799.7 618 68.6
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.8e-228 796.2 616 68.3
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 2.0e-227 792.7 616 67.0
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 2.6e-227 792.3 618 66.8
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 5.0e-226 788.1 629 67.7
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 1.6e-224 783.1 604 68.4
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.6e-224 783.1 621 66.8
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 5.1e-223 778.1 616 66.9
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 5.1e-223 778.1 616 66.9
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 8.7e-223 777.3 617 66.6
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.5e-222 776.5 664 62.0
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.3e-221 773.5 620 66.5
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 3.7e-221 771.9 616 66.2
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 8.2e-221 770.8 622 65.4
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 5.3e-220 768.1 618 65.5
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.5e-219 766.5 610 65.7
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.5e-218 761.1 619 65.4
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.5e-217 758.1 630 65.1
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.6e-216 755.4 625 64.5
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.3e-214 748.8 625 64.8
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 4.3e-214 748.4 606 65.7
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 5.7e-214 748.0 594 65.8
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.8e-212 743.0 617 63.5
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.8e-212 743.0 628 63.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.0e-211 739.6 600 65.2
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-210 736.9 618 64.1
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.2e-210 736.1 589 65.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 5.5e-209 731.5 654 61.9
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 7.2e-209 731.1 613 64.4
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.6e-208 729.9 613 64.9
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 7.9e-208 727.6 618 62.9
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.8e-207 726.5 623 61.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-206 723.8 614 62.7
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.1e-206 723.8 611 62.8
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.7e-205 719.9 590 64.4
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 5.3e-204 714.9 589 64.0
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 7.0e-204 714.5 629 60.1
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.2e-203 713.8 592 63.2
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.6e-203 713.4 591 63.8
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 4.5e-203 711.8 590 64.6
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.3e-202 710.3 637 61.4
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.2e-202 709.5 643 61.4
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 5.0e-202 708.4 608 63.5
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.2e-201 705.3 626 59.9
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 1.8e-199 699.9 594 63.3
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 6.7e-199 698.0 596 62.6
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 2.6e-198 696.0 611 62.0
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 9.7e-198 694.1 591 62.3
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 2.8e-197 692.6 605 62.3
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 3.7e-197 692.2 590 63.9
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 8.2e-197 691.0 593 62.6
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 9.1e-196 687.6 598 62.4
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.0e-195 686.4 590 61.7
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.7e-195 686.0 587 61.7
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 3.5e-195 685.6 630 58.7
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 4.5e-195 685.3 619 60.7
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.3e-194 683.7 593 61.4
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.7e-194 683.3 603 61.0
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.9e-194 682.6 634 59.0
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 3.8e-194 682.2 600 60.7
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-193 680.2 598 60.7
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 3.2e-193 679.1 606 59.6
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 4.0e-191 672.2 602 59.8
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-190 670.6 607 60.1
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.5e-190 670.2 624 59.0
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 5.7e-190 668.3 585 60.9
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.2e-189 666.4 615 59.3
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.2e-189 666.4 615 59.3
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.8e-188 663.3 603 59.9
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.8e-188 663.3 587 61.3
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.4e-188 662.9 606 59.7
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-187 660.6 602 60.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.7e-187 659.4 624 59.0
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 1.0e-186 657.5 615 59.3
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.3e-186 657.1 590 60.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.2e-186 656.4 604 59.3
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.9e-186 656.0 586 59.7
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 3.8e-186 655.6 647 57.8
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 3.8e-186 655.6 639 58.8
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 5.0e-186 655.2 594 60.1
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 5.0e-186 655.2 590 60.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 4.2e-185 652.1 587 60.0
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 5.5e-185 651.7 586 60.1
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 2.1e-184 649.8 613 57.9
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.4e-180 636.3 585 60.2
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.2e-179 634.0 617 54.6
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.0e-178 630.9 627 55.5
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.3e-178 630.6 619 58.0
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 6.6e-178 628.2 613 56.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-177 627.5 638 57.4
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.4e-174 615.9 618 58.1
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.2e-171 607.4 619 56.7
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 4.6e-171 605.5 506 65.0
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 9.5e-169 597.8 582 59.1
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 6.4e-165 585.1 617 56.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 7.0e-164 581.6 636 53.9
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.3e-162 577.4 630 51.3
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 9.5e-161 571.2 588 55.8
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.2e-160 570.9 607 51.6
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 3.6e-160 569.3 607 51.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 8.1e-160 568.2 592 55.6
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-152 544.3 599 53.1
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.4e-149 531.6 471 62.4
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.1e-148 531.2 614 52.0
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.3e-145 519.2 475 60.2
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.1e-132 478.0 598 47.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.3e-125 454.5 583 47.9
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.1e-121 441.4 622 44.2
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.0e-119 433.0 636 42.5
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.5e-105 387.9 470 51.3
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.1e-99 367.5 387 54.0
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 1.1e-97 361.7 365 56.4
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 6.5e-93 345.9 262 69.8
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 8.5e-93 345.5 548 41.2
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 2.7e-78 297.4 361 48.5
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 4.0e-74 283.5 346 48.8
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.0e-74 283.5 280 55.7
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 5.2e-74 283.1 356 48.3
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.4e-63 247.7 219 58.4
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 9.2e-63 245.7 313 43.8
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 5.0e-61 240.0 216 57.4
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 6.6e-61 239.6 254 52.4
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 8.6e-61 239.2 291 46.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 8.0e-59 232.6 227 56.8
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 3.2e-55 220.7 212 54.7
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 6.6e-53 213.0 119 89.1
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 3.3e-44 184.1 230 43.0
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 9.5e-44 182.6 120 71.7
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.1e-43 179.5 164 57.3
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.0e-41 174.9 147 60.5
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.2e-40 171.4 260 40.0
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 2.7e-38 164.5 119 68.9
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.3e-37 161.4 278 35.3
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.3e-37 161.4 129 69.0
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 8.6e-37 159.5 98 76.5
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.6e-36 156.8 162 54.9
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 5.8e-33 146.7 122 61.5
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 9.9e-33 146.0 142 56.3
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 1.7e-32 145.2 278 34.9
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.7e-30 137.9 167 46.7
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.5e-28 131.3 127 64.6
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.2e-27 129.0 113 65.5
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-26 125.6 156 46.2
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 5.2e-26 123.6 87 71.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.2e-25 122.5 87 71.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 7.6e-25 119.8 65 86.2
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.9e-20 105.1 74 73.0
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.3e-20 104.4 178 34.8
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 9.6e-20 102.8 70 70.0
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.1e-18 99.4 106 48.1
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.4e-18 99.0 159 41.5
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 2.6e-17 94.7 154 38.3
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.1e-15 89.4 63 69.8
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.1e-15 89.4 69 68.1
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.4e-15 87.0 70 64.3
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 9.3e-15 86.3 145 43.4
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 9.6e-12 76.3 49 73.5
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 2.4e-10 71.6 49 69.4
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 2.4e-10 71.6 72 52.8
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 2.6e-09 68.2 48 68.8
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.3e-08 65.9 68 47.1
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 4.9e-08 63.9 123 31.7


User provided reference genes

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