Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 9.2e-148 526.9 279 100.0
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.4e-103 380.2 279 77.1
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.1e-87 325.5 239 78.2
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.3e-79 298.5 294 59.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.5e-73 280.4 290 58.6
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.6e-73 279.6 300 57.7
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.1e-71 272.3 305 54.4
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 4.1e-71 272.3 299 55.2
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.2e-70 270.8 266 59.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 1.2e-70 270.8 298 58.1
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 2.6e-70 269.6 300 55.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.6e-70 269.6 298 56.7
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 3.4e-70 269.2 299 54.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.7e-69 266.9 298 56.0
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.7e-69 266.9 298 56.0
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.2e-69 266.5 297 55.9
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 8.5e-69 264.6 297 55.2
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 8.5e-69 264.6 300 53.7
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.4e-68 263.8 287 55.7
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.9e-68 263.5 300 56.7
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.5e-68 261.9 290 56.2
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.5e-68 261.9 269 57.6
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 4.7e-67 258.8 305 52.8
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 6.1e-67 258.5 285 55.8
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.1e-65 254.2 300 55.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.0e-65 253.4 300 56.0
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 2.6e-65 253.1 303 53.5
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 9.7e-65 251.1 301 52.2
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 6.3e-64 248.4 303 54.1
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 1.1e-63 247.7 298 52.0
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 1.6e-62 243.8 281 54.4
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 3.5e-62 242.7 285 54.0
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.1e-59 233.4 303 51.8
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 4.7e-59 232.3 300 49.7
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 4.4e-57 225.7 298 49.0
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.7e-57 225.3 280 51.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 1.3e-56 224.2 305 50.8
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.3e-56 224.2 296 48.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.2e-56 223.4 298 50.0
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.8e-56 222.2 267 52.1
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 7.7e-54 214.9 293 50.5
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.0e-53 214.5 294 49.3
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.3e-53 214.2 254 52.8
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.2e-53 213.4 259 50.6
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.5e-53 211.5 268 51.1
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.1e-52 211.1 298 46.3
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 1.9e-52 210.3 283 48.1
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 1.9e-52 210.3 295 46.8
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.0e-50 203.0 291 45.7
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.2e-50 202.2 300 46.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.2e-48 196.8 278 48.2
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.4e-47 194.1 310 46.1
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-46 190.7 283 47.3
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.6e-46 190.7 283 46.3
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.5e-46 189.5 282 48.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 4.2e-44 182.6 305 45.6
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.8e-39 167.2 292 42.8
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 5.0e-37 159.1 266 44.0
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.6e-37 158.7 258 44.6
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.5e-36 157.5 220 50.5
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 7.3e-36 155.2 294 41.2
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.5e-36 154.8 149 59.1
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 9.5e-36 154.8 146 58.9
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 3.6e-35 152.9 317 40.1
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.6e-35 152.9 145 60.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.6e-35 152.9 145 60.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.7e-35 152.5 145 60.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.1e-35 152.1 145 59.3
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 1.0e-34 151.4 304 41.4
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 2.3e-34 150.2 292 42.5
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.3e-34 150.2 280 42.1
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 3.0e-34 149.8 295 41.0
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 6.8e-34 148.7 283 40.6
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 1.5e-33 147.5 295 40.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.0e-33 147.1 295 40.7
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 9.8e-33 144.8 291 39.5
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 3.7e-32 142.9 225 45.8
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 6.4e-32 142.1 270 41.1
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.4e-31 141.0 278 40.3
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 7.0e-31 138.7 280 39.6
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.6e-30 136.0 268 41.4
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 7.8e-30 135.2 208 47.6
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.0e-29 134.8 245 41.6
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.0e-29 134.8 270 39.6
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 1.9e-28 130.6 242 41.3
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 3.6e-27 126.3 278 37.1
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.9e-26 121.7 291 36.4
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 8.9e-26 121.7 275 40.4
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.2e-25 121.3 289 39.1
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 7.5e-25 118.6 294 35.0
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.7e-24 117.5 151 49.0
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.1e-23 114.8 282 40.1
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 3.2e-23 113.2 267 38.2
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 9.2e-23 111.7 290 33.8
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.7e-21 107.5 301 34.6
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.7e-21 107.5 223 41.7
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 5.0e-21 105.9 286 34.6
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.0e-21 105.9 277 35.0
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 6.6e-21 105.5 155 45.8
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 8.6e-21 105.1 291 34.7
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.1e-20 104.8 285 35.4
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.5e-20 104.4 289 37.0
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 5.6e-20 102.4 185 41.1
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 5.6e-20 102.4 275 37.5
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 3.6e-19 99.8 201 41.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 6.2e-19 99.0 137 48.9
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.4e-18 97.8 210 34.8
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 1.4e-18 97.8 265 33.6
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.8e-18 97.4 291 33.0
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 5.2e-18 95.9 279 33.7
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 5.2e-18 95.9 293 32.1
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.2e-17 94.7 294 30.6
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.2e-17 94.7 270 31.9
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.0e-17 94.0 265 35.1
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.6e-17 93.6 79 62.0
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 2.6e-17 93.6 262 35.9
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 3.4e-17 93.2 79 59.5
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 4.4e-17 92.8 282 33.7
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.3e-16 91.3 90 57.8
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.2e-16 90.5 263 32.3
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.9e-16 90.1 274 33.2
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.9e-16 90.1 256 34.0
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.7e-16 89.7 170 38.2
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 4.9e-16 89.4 261 32.2
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 8.3e-16 88.6 282 34.4
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.1e-15 88.2 228 34.2
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 1.4e-15 87.8 99 52.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.4e-15 87.8 272 34.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.4e-15 87.8 122 48.4
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 3.2e-15 86.7 139 38.1
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 9.2e-15 85.1 259 34.7
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 9.2e-15 85.1 193 37.8
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-14 84.7 71 66.2
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.2e-14 84.7 263 35.4
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.6e-14 84.3 269 33.5
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 2.7e-14 83.6 270 31.9
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 4.6e-14 82.8 289 31.8
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 4.6e-14 82.8 227 36.6
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.0e-14 82.4 183 37.2
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 6.0e-14 82.4 257 31.9
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.0e-13 81.6 75 60.0
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.0e-13 81.6 222 33.8
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.0e-13 81.6 245 33.1
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.7e-13 80.9 264 35.6
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.7e-13 80.9 268 34.3
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.0e-13 80.1 78 57.7
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 3.0e-13 80.1 75 60.0
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 3.9e-13 79.7 126 41.3
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 8.6e-13 78.6 163 38.7
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.5e-12 77.8 259 34.0
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.9e-12 77.4 266 29.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 9.5e-12 75.1 92 44.6
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 2.1e-11 73.9 214 36.4
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 4.7e-11 72.8 117 40.2
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 6.2e-11 72.4 248 32.7
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 1.4e-10 71.2 242 29.3
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.8e-10 70.9 75 52.0
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.8e-10 70.9 65 58.5
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.4e-10 70.5 135 42.2
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 3.1e-10 70.1 231 33.8
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 8.9e-10 68.6 259 29.7
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.2e-09 68.2 231 30.7
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.5e-09 67.8 197 29.4
ClCG08G009390 Citrullus lanatus HOM05D003937 ORTHO05D004583 2.0e-09 67.4 254 29.5
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 2.0e-09 67.4 95 42.1
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.6e-09 67.0 65 52.3
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 9.9e-09 65.1 248 29.0
Mapoly0074s0020 Marchantia polymorpha HOM05D003937 ORTHO05D004583 6.4e-08 62.4 171 32.2
Peaxi162Scf00711g00414 Petunia axillaris HOM05D003937 ORTHO05D004583 6.4e-08 62.4 246 31.3
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 8.4e-08 62.0 139 35.3
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 1.1e-07 61.6 136 34.6
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.4e-07 60.5 101 40.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 2.4e-07 60.5 265 27.5
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 3.2e-07 60.1 111 38.7
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 5.4e-07 59.3 190 32.6
SEGI_41193 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 6.0e-06 55.8 124 34.7


User provided reference genes

Program Settings