Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 1.8e-58 229.2 125 100.0
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 7.0e-55 217.2 123 95.1
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 3.3e-49 198.4 125 84.0
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.5e-46 188.3 125 84.0
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 7.7e-38 160.6 117 76.1
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 1.8e-34 149.4 125 71.2
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 6.8e-34 147.5 120 69.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 6.8e-34 147.5 118 69.5
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.5e-33 146.4 117 70.1
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 2.0e-33 146.0 112 71.4
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 2.2e-32 142.5 112 71.4
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.2e-32 142.5 117 70.9
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 6.3e-32 141.0 115 68.7
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 6.3e-32 141.0 125 68.8
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.8e-31 139.4 122 67.2
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.8e-31 139.4 117 68.4
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 3.1e-31 138.7 118 70.3
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 5.4e-31 137.9 125 68.0
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 7.0e-31 137.5 115 67.0
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 9.2e-31 137.1 126 66.7
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.6e-30 136.3 124 67.7
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.7e-30 135.6 122 66.4
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.5e-30 135.2 121 66.1
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 3.5e-30 135.2 112 67.9
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 4.5e-30 134.8 120 65.0
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 4.5e-30 134.8 129 63.6
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.0e-29 133.7 121 65.3
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.0e-29 133.7 112 67.9
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.0e-29 133.7 117 65.0
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-29 133.3 110 68.2
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.3e-29 132.5 117 65.0
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-29 132.5 117 65.0
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 2.3e-29 132.5 117 65.0
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 2.3e-29 132.5 120 66.7
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.3e-29 132.5 118 65.3
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 2.9e-29 132.1 112 69.6
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 2.9e-29 132.1 126 66.7
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.9e-29 132.1 118 66.9
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 2.9e-29 132.1 126 64.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 3.8e-29 131.7 125 61.6
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.6e-29 130.6 117 64.1
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 8.6e-29 130.6 112 67.0
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 8.6e-29 130.6 117 66.7
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.1e-28 130.2 125 67.2
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.1e-28 130.2 117 65.0
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.1e-28 130.2 117 65.0
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.5e-28 129.8 117 65.0
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.9e-28 129.4 126 64.3
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 2.5e-28 129.0 120 65.0
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 3.3e-28 128.6 117 66.7
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 4.3e-28 128.3 117 65.8
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 4.3e-28 128.3 117 64.1
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 1.2e-27 126.7 126 64.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.2e-27 126.7 112 65.2
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 1.2e-27 126.7 111 67.6
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-27 126.7 120 65.0
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 2.8e-27 125.6 119 63.9
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.6e-27 125.2 126 62.7
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.7e-27 124.8 117 60.7
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 4.7e-27 124.8 121 61.2
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 6.1e-27 124.4 119 64.7
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 8.0e-27 124.0 125 64.0
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.0e-26 123.6 112 63.4
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.4e-26 123.2 119 65.5
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.8e-26 122.9 119 63.0
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.8e-26 122.9 119 63.9
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 2.3e-26 122.5 123 63.4
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 2.3e-26 122.5 123 63.4
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 3.0e-26 122.1 119 63.9
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 3.0e-26 122.1 117 61.5
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 3.0e-26 122.1 119 64.7
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.0e-26 121.7 113 65.5
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.0e-26 121.7 111 65.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 5.2e-26 121.3 126 60.3
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 8.9e-26 120.6 118 64.4
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 8.9e-26 120.6 119 60.5
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 1.5e-25 119.8 119 63.9
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 5.8e-25 117.9 119 63.9
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 9.8e-25 117.1 119 63.9
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.9e-24 115.5 117 60.7
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 2.9e-24 115.5 122 59.8
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 6.4e-24 114.4 126 60.3
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 8.3e-24 114.0 115 61.7
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 8.3e-24 114.0 125 57.6
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 2.4e-23 112.5 117 58.1
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 3.2e-23 112.1 110 62.7
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 3.2e-23 112.1 112 58.9
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 4.1e-23 111.7 118 56.8
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 9.2e-23 110.5 119 59.7
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 1.6e-22 109.8 118 55.9
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.6e-22 109.8 118 57.6
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 2.7e-22 109.0 114 57.9
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 6.0e-22 107.8 119 57.1
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 6.0e-22 107.8 119 57.1
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 7.8e-22 107.5 119 58.0
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 1.0e-21 107.1 119 58.0
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 1.0e-21 107.1 119 58.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 1.0e-21 107.1 119 58.0
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 1.0e-21 107.1 116 58.6
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 1.3e-21 106.7 119 58.8
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 1.3e-21 106.7 119 58.8
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 1.3e-21 106.7 119 58.8
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 5.0e-21 104.8 118 56.8
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 6.6e-21 104.4 119 57.1
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 8.6e-21 104.0 153 48.4
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 1.1e-20 103.6 113 57.5
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 6.2e-19 97.8 124 51.6
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.1e-18 97.1 117 53.0
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.1e-18 97.1 112 51.8
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 1.4e-18 96.7 112 50.9
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 5.2e-18 94.7 115 51.3
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 8.9e-18 94.0 115 51.3
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 8.9e-18 94.0 101 55.4
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-17 93.2 117 53.0
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 2.6e-17 92.4 120 53.3
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 5.8e-17 91.3 103 57.3
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 2.9e-16 89.0 93 58.1
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 3.7e-16 88.6 126 50.0
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 4.9e-16 88.2 91 58.2
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.4e-15 86.7 91 58.2
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.9e-15 86.3 116 48.3
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 3.2e-15 85.5 90 57.8
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.6e-14 83.2 113 49.6
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 2.7e-14 82.4 106 53.8
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.7e-14 82.4 88 54.5
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 4.6e-14 81.6 112 50.9
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.0e-14 81.3 75 62.7
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 6.0e-14 81.3 75 62.7
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 6.0e-14 81.3 85 61.2
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-13 80.1 82 59.8
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 1.7e-13 79.7 101 53.5
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 2.3e-13 79.3 118 49.2
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 2.3e-13 79.3 125 45.6
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.1e-13 78.2 82 59.8
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.1e-13 78.2 82 58.5
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 4.3e-12 75.1 77 57.1
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.2e-11 73.6 88 58.0
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 2.1e-11 72.8 117 47.0
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 3.6e-11 72.0 76 55.3
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.3e-10 69.3 64 64.1
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 4.0e-10 68.6 43 81.4
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.5e-09 66.6 111 40.5
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 5.8e-09 64.7 194 32.5
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 7.5e-09 64.3 80 55.0
ECA238G3836 Erigeron canadensis HOM05D000407 ORTHO05D001717 5.4e-07 58.2 50 62.0
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 7.1e-07 57.8 44 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 3.5e-06 55.5 113 38.1
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 6.0e-06 54.7 38 78.9


User provided reference genes

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