Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G161001 Populus trichocarpa HOM05D002789 ORTHO05D036367 1.3e-55 219.5 114 100.0
Nitab4.5_0001135g0040 Nicotiana tabacum HOM05D002789 ORTHO05D003185 7.4e-11 70.9 70 57.1
Manes.11G164700 Manihot esculenta HOM05D002789 ORTHO05D003185 1.3e-10 70.1 50 76.0
MSTRG.21025 Avicennia marina HOM05D002789 ORTHO05D003185 1.6e-10 69.7 48 70.8
Peaxi162Scf00224g00516 Petunia axillaris HOM05D002789 ORTHO05D003185 1.6e-10 69.7 48 75.0
Sabra04G0134800 Salix brachista HOM05D002789 ORTHO05D003185 1.6e-10 69.7 48 81.2
Nitab4.5_0003516g0030 Nicotiana tabacum HOM05D002789 ORTHO05D003185 2.1e-10 69.3 48 70.8
Potri.004G199600 Populus trichocarpa HOM05D002789 ORTHO05D003185 2.1e-10 69.3 48 79.2
SGA_v2.0_scaffold7G03993 Striga asiatica HOM05D002789 ORTHO05D003185 2.1e-10 69.3 48 68.8
Dinv22806 Davidia involucrata HOM05D002789 ORTHO05D003185 3.6e-10 68.6 48 75.0
Lj2A971G35 Lonicera japonica HOM05D002789 ORTHO05D003185 4.8e-10 68.2 48 72.9
MBI17_g34508_MAGBIO Magnolia biondii HOM05D002789 ORTHO05D003185 4.8e-10 68.2 48 77.1
PGSC0003DMG400026329 Solanum tuberosum HOM05D002789 ORTHO05D003185 4.8e-10 68.2 48 70.8
Aqoxy4G02708 Aquilegia oxysepala HOM05D002789 ORTHO05D003185 8.1e-10 67.4 48 68.8
Migut.D02426 Erythranthe guttata HOM05D002789 ORTHO05D003185 8.1e-10 67.4 48 66.7
Glyma.11G180900 Glycine max HOM05D002789 ORTHO05D003185 8.1e-10 67.4 49 73.5
Glyma.12G092300 Glycine max HOM05D002789 ORTHO05D003185 8.1e-10 67.4 49 73.5
CiPaw.13G132500 Carya illinoinensis HOM05D002789 ORTHO05D003185 1.4e-09 66.6 89 44.9
Phvul.011G096700 Phaseolus vulgaris HOM05D002789 ORTHO05D003185 1.4e-09 66.6 69 58.0
Dinv22808 Davidia involucrata HOM05D002789 ORTHO05D003185 1.8e-09 66.2 48 70.8
Lj3g0016839 Lotus japonicus HOM05D002789 ORTHO05D003185 1.8e-09 66.2 50 70.0
Lalb_Chr03g0028301 Lupinus albus HOM05D002789 ORTHO05D003185 1.8e-09 66.2 48 68.8
Solyc11g068730.2 Solanum lycopersicum HOM05D002789 ORTHO05D003185 1.8e-09 66.2 48 70.8
Sopen11g027440 Solanum pennellii HOM05D002789 ORTHO05D003185 1.8e-09 66.2 48 70.8
CSS0027967 Camellia sinensis var. sinensis HOM05D002789 ORTHO05D003185 2.4e-09 65.9 48 72.9
CSS0031098 Camellia sinensis var. sinensis HOM05D002789 ORTHO05D003185 2.4e-09 65.9 48 72.9
PSO384G1444 Papaver somniferum HOM05D002789 ORTHO05D003185 3.1e-09 65.5 49 69.4
RcHm_v2.0_Chr5g0047031 Rosa chinensis HOM05D002789 ORTHO05D003185 3.1e-09 65.5 49 69.4
Ciclev10028755m.g Citrus clementina HOM05D002789 ORTHO05D003185 4.0e-09 65.1 39 79.5
Gohir.D07G115200 Gossypium hirsutum HOM05D002789 ORTHO05D003185 4.0e-09 65.1 48 68.8
Gorai.001G123400 Gossypium raimondii HOM05D002789 ORTHO05D003185 4.0e-09 65.1 48 68.8
FAN25G2876 Fragaria x ananassa HOM05D002789 ORTHO05D003185 5.3e-09 64.7 41 73.2
PSO339G2912 Papaver somniferum HOM05D002789 ORTHO05D003185 5.3e-09 64.7 49 69.4
FvH4_3g25810 Fragaria vesca HOM05D002789 ORTHO05D003185 6.9e-09 64.3 41 70.7
FAN11G3565 Fragaria x ananassa HOM05D002789 ORTHO05D003185 6.9e-09 64.3 41 70.7
MD03G1150700 Malus domestica HOM05D002789 ORTHO05D003185 6.9e-09 64.3 48 75.0
Thecc.09G277600 Theobroma cacao HOM05D002789 ORTHO05D003185 6.9e-09 64.3 50 68.0
TAR633G2089 Trochodendron aralioides HOM05D002789 ORTHO05D003185 6.9e-09 64.3 48 68.8
VMungo1127G1590 Vigna mungo HOM05D002789 ORTHO05D003185 6.9e-09 64.3 69 56.5
Duzib150G0663 Durio zibethinus HOM05D002789 ORTHO05D003185 1.2e-08 63.5 48 70.8
Gohir.A07G111450 Gossypium hirsutum HOM05D002789 ORTHO05D003185 1.2e-08 63.5 48 66.7
AUR62001530 Chenopodium quinoa HOM05D002789 ORTHO05D003185 1.5e-08 63.2 49 71.4
AUR62020252 Chenopodium quinoa HOM05D002789 ORTHO05D003185 1.5e-08 63.2 49 71.4
Manes.04G000700 Manihot esculenta HOM05D002789 ORTHO05D003185 1.5e-08 63.2 48 68.8
arahy.Tifrunner.gnm1.ann1.FY23RQ Arachis hypogaea HOM05D002789 ORTHO05D003185 2.0e-08 62.8 50 68.0
arahy.Tifrunner.gnm1.ann1.JG5ZXS Arachis hypogaea HOM05D002789 ORTHO05D003185 2.0e-08 62.8 50 68.0
Cpa.g.sc195.34 Carica papaya HOM05D002789 ORTHO05D003185 2.0e-08 62.8 48 66.7
CsaV3_1G015110 Cucumis sativus L. HOM05D002789 ORTHO05D003185 2.0e-08 62.8 48 68.8
MBI17_g11951_MAGBIO Magnolia biondii HOM05D002789 ORTHO05D003185 2.0e-08 62.8 54 70.4
TAR633G2341 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.0e-08 62.8 48 66.7
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 2.6e-08 62.4 48 66.7
Haze_23339 Corylus avellana HOM05D002789 ORTHO05D003185 3.4e-08 62.0 48 68.8
FAN16G3412 Fragaria x ananassa HOM05D002789 ORTHO05D003185 3.4e-08 62.0 41 70.7
Ah.08g223210 Amaranthus hybridus HOM05D002789 ORTHO05D003185 4.5e-08 61.6 53 66.0
MELO3C025585.2 Cucumis melo HOM05D002789 ORTHO05D003185 4.5e-08 61.6 48 66.7
FAN21G3754 Fragaria x ananassa HOM05D002789 ORTHO05D003185 4.5e-08 61.6 41 70.7
Atru.chr3.3159 Acer truncatum HOM05D002789 ORTHO05D003185 5.8e-08 61.2 39 76.9
Cc01_g08760 Coffea canephora HOM05D002789 ORTHO05D003185 5.8e-08 61.2 51 62.7
ClCG01G011750 Citrullus lanatus HOM05D002789 ORTHO05D003185 7.6e-08 60.8 48 66.7
Rhsim01G0202900 Rhododendron simsii HOM05D002789 ORTHO05D003185 7.6e-08 60.8 40 77.5
Actinidia37069 Actinidia chinensis HOM05D002789 ORTHO05D003185 9.9e-08 60.5 39 76.9
EL10Ac7g16327 Beta vulgaris HOM05D002789 ORTHO05D003185 9.9e-08 60.5 48 72.9
PGR119G2521 Punica granatum HOM05D002789 ORTHO05D003185 9.9e-08 60.5 53 67.9
Duzib170G0571 Durio zibethinus HOM05D002789 ORTHO05D003185 1.3e-07 60.1 48 64.6
Medtr4g052390 Medicago truncatula HOM05D002789 ORTHO05D003185 1.3e-07 60.1 49 65.3
CAN.G745.22 Capsicum annuum HOM05D002789 ORTHO05D003185 1.7e-07 59.7 48 66.7
QL01p011767 Quercus lobata HOM05D002789 ORTHO05D003185 1.7e-07 59.7 43 74.4
Ca_19445_v3 Cicer arietinum L. HOM05D002789 ORTHO05D003185 2.2e-07 59.3 49 65.3
Nn2g15500 Nelumbo nucifera HOM05D002789 ORTHO05D003185 2.2e-07 59.3 48 68.8
HanXRQChr13g0420411 Helianthus annuus HOM05D002789 ORTHO05D003185 2.9e-07 58.9 48 64.6
Psat7g186680 Pisum sativum HOM05D002789 ORTHO05D003185 3.8e-07 58.5 49 65.3
vmacro14335 Vaccinium macrocarpon HOM05D002789 ORTHO05D036367 3.8e-07 58.5 62 62.9
CiPaw.13G132600 Carya illinoinensis HOM05D002789 ORTHO05D003185 4.9e-07 58.2 48 62.5
TPR.G17206 Trifolium pratense HOM05D002789 ORTHO05D003185 4.9e-07 58.2 51 58.8
Cfa009980 Carpinus fangiana HOM05D002789 ORTHO05D003185 6.4e-07 57.8 35 80.0
Hund18781 Selenicereus undatus HOM05D002789 ORTHO05D003185 8.4e-07 57.4 48 64.6
Sc06g0007140 Simmondsia chinensis HOM05D002789 ORTHO05D003185 8.4e-07 57.4 48 64.6
Duzib168G1289 Durio zibethinus HOM05D002789 ORTHO05D003185 1.1e-06 57.0 48 64.6
unitig_0.g1471 Utricularia gibba HOM05D002789 ORTHO05D003185 1.1e-06 57.0 47 63.8
Eucgr.J00529 Eucalyptus grandis HOM05D002789 ORTHO05D003185 1.9e-06 56.2 53 64.2
HanXRQChr03g0091481 Helianthus annuus HOM05D002789 ORTHO05D003185 1.9e-06 56.2 48 62.5
CANSAT25G2714 Cannabis sativa HOM05D002789 ORTHO05D003185 4.2e-06 55.1 45 62.2
MD11G1170100 Malus domestica HOM05D002789 ORTHO05D003185 4.2e-06 55.1 49 63.3
Prupe.6G137600 Prunus persica HOM05D002789 ORTHO05D003185 4.2e-06 55.1 48 64.6
TWI79G0289 Tripterygium wilfordii HOM05D002789 ORTHO05D003185 4.2e-06 55.1 48 66.7
CDE04G3244 Ceratophyllum demersum HOM05D002789 ORTHO05D003185 5.5e-06 54.7 48 60.4
HanXRQChr12g0364281 Helianthus annuus HOM05D002789 ORTHO05D036367 5.5e-06 54.7 47 61.7
QL01p011757 Quercus lobata HOM05D002789 ORTHO05D003185 5.5e-06 54.7 42 69.0
Ciclev10020864m.g Citrus clementina HOM05D002789 ORTHO05D003185 9.3e-06 53.9 42 66.7


User provided reference genes

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