Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.7e-118 429.5 231 100.0
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 3.9e-112 408.3 231 92.6
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 5.9e-108 394.4 231 91.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 3.8e-107 391.7 231 89.6
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 6.5e-107 391.0 231 87.9
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 6.5e-107 391.0 231 89.6
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 8.5e-107 390.6 231 90.9
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 8.5e-107 390.6 231 91.3
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.4e-106 389.8 231 87.9
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 3.2e-106 388.7 234 87.6
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 3.2e-106 388.7 231 89.2
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 4.2e-106 388.3 233 89.3
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.5e-106 387.9 231 89.2
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.5e-106 387.9 231 89.2
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 5.5e-106 387.9 231 90.0
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 5.5e-106 387.9 228 88.6
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 5.5e-106 387.9 231 88.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 7.2e-106 387.5 231 88.7
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 9.4e-106 387.1 228 89.5
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.2e-105 386.7 229 91.3
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.6e-105 386.3 231 89.6
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.1e-105 386.0 231 89.2
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 2.1e-105 386.0 232 89.2
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 2.1e-105 386.0 231 87.9
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.7e-105 385.6 225 91.6
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 3.6e-105 385.2 231 87.9
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 4.7e-105 384.8 230 90.0
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 4.7e-105 384.8 235 88.9
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 1.4e-104 383.3 231 87.9
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 1.4e-104 383.3 231 89.2
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.8e-104 382.9 228 89.9
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 1.8e-104 382.9 232 87.1
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.8e-104 382.9 231 90.0
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 1.8e-104 382.9 229 88.2
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 2.3e-104 382.5 231 87.9
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 2.3e-104 382.5 231 87.4
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 2.3e-104 382.5 231 88.7
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 2.3e-104 382.5 231 88.7
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 89.2
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 87.9
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 3.9e-104 381.7 231 91.3
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 3.9e-104 381.7 229 89.1
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 5.2e-104 381.3 229 90.0
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 5.2e-104 381.3 227 89.0
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 5.2e-104 381.3 232 87.5
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 6.7e-104 380.9 231 87.4
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 6.7e-104 380.9 233 86.3
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 8.8e-104 380.6 228 87.7
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 1.1e-103 380.2 231 87.0
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 2.0e-103 379.4 231 88.3
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.6e-103 379.0 229 88.2
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 3.3e-103 378.6 231 86.6
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 3.3e-103 378.6 232 88.8
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.3e-103 378.6 232 88.8
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.4e-103 378.3 231 86.6
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 4.4e-103 378.3 229 88.2
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 7.4e-103 377.5 231 87.4
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 9.7e-103 377.1 231 87.4
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.3e-102 376.7 229 87.8
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.3e-102 376.7 231 86.1
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.7e-102 376.3 231 87.0
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 1.7e-102 376.3 232 86.6
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 1.7e-102 376.3 232 87.9
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 2.2e-102 375.9 232 87.9
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 2.2e-102 375.9 226 87.6
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.2e-102 375.9 215 89.8
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 2.8e-102 375.6 231 86.6
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.8e-102 375.6 231 84.8
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 2.8e-102 375.6 232 87.5
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 3.7e-102 375.2 234 84.6
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.7e-102 375.2 231 84.8
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 3.7e-102 375.2 234 84.2
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 4.8e-102 374.8 230 88.7
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 4.8e-102 374.8 207 94.2
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 6.3e-102 374.4 239 84.5
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 6.3e-102 374.4 227 88.1
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 8.2e-102 374.0 231 85.7
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 8.2e-102 374.0 232 87.1
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.1e-101 373.6 233 84.5
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.1e-101 373.6 229 88.2
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.1e-101 373.6 231 86.6
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 231 87.4
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.4e-101 373.2 233 84.5
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 1.4e-101 373.2 231 84.8
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-101 372.9 231 84.8
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.8e-101 372.9 231 85.7
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.8e-101 372.9 231 85.7
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 85.7
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 85.7
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 85.7
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.4e-101 372.5 231 85.3
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 5.3e-101 371.3 234 85.0
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 5.3e-101 371.3 231 85.3
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.3e-101 371.3 230 87.0
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 7.0e-101 370.9 226 88.5
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 7.0e-101 370.9 228 88.2
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 9.1e-101 370.5 231 84.4
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 1.2e-100 370.2 229 83.0
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.6e-100 369.8 231 84.0
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.6e-100 369.8 231 84.0
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.6e-100 369.8 227 87.2
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 1.6e-100 369.8 233 83.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.6e-100 369.8 232 86.2
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.3e-99 366.7 258 78.3
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 5.0e-99 364.8 208 92.8
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 2.5e-98 362.5 203 92.1
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 4.2e-98 361.7 207 89.9
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 5.5e-98 361.3 228 83.8
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 4.7e-97 358.2 228 82.0
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 1.2e-95 353.6 233 84.1
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 2.2e-94 349.4 225 81.3
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.1e-93 347.1 302 67.5
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 2.4e-93 345.9 231 80.5
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.5e-90 335.9 192 91.1
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 7.0e-85 317.8 220 74.5
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 2.0e-84 316.2 204 81.4
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 1.2e-81 307.0 207 78.7
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 3.1e-77 292.4 194 84.0
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 4.1e-77 292.0 181 87.8
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 9.2e-77 290.8 194 85.1
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.0e-75 287.3 212 73.1
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.3e-75 287.0 161 93.8
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 6.6e-75 284.6 158 94.9
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 3.3e-74 282.3 158 93.0
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 5.6e-74 281.6 158 93.0
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 2.1e-73 279.6 192 83.3
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 2.1e-73 279.6 179 83.2
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.8e-73 279.3 157 94.3
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.4e-70 268.1 186 75.8
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.9e-69 266.5 161 87.6
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 7.0e-69 264.6 183 77.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 6.4e-62 241.5 160 78.8
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 5.8e-55 218.4 124 91.1
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 6.0e-52 208.4 161 72.0
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.4e-45 185.3 110 90.9
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 5.1e-43 178.7 103 91.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 9.0e-40 167.9 93 96.8
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.2e-36 157.5 158 58.2
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.5e-34 150.6 88 92.0
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 1.7e-30 137.1 79 86.1
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 1.6e-25 120.6 206 39.3
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 9.0e-24 114.8 81 75.3
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 5.8e-23 112.1 57 96.5
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 2.1e-17 93.6 65 75.4
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.7e-17 92.8 66 74.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.5e-15 87.4 65 67.7
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 5.1e-11 72.4 50 74.0


User provided reference genes

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