Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.3e-103 379.8 194 100.0
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 7.7e-85 317.4 187 87.2
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 3.4e-64 248.8 188 73.9
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.7e-63 246.5 188 67.6
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 1.3e-60 236.9 188 63.3
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 3.2e-59 232.3 188 64.4
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 7.2e-59 231.1 198 62.1
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 1.2e-56 223.8 165 69.7
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 2.0e-56 223.0 189 61.9
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.7e-55 219.9 202 62.9
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.2e-55 219.5 189 61.9
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 4.9e-55 218.4 191 62.3
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 6.3e-55 218.0 188 62.8
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 4.1e-54 215.3 188 62.8
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 9.2e-54 214.2 189 60.8
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 9.2e-54 214.2 189 60.8
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 1.5e-51 206.8 192 59.9
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 1.4e-49 200.3 189 58.2
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 6.8e-49 198.0 190 58.4
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.9e-47 192.6 185 57.8
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.8e-46 189.9 190 57.4
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 7.0e-46 188.0 199 54.8
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 9.2e-46 187.6 197 55.3
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 2.7e-45 186.0 190 56.8
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 3.5e-45 185.7 178 54.5
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 7.8e-45 184.5 194 55.2
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 2.3e-44 183.0 170 58.8
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 3.9e-44 182.2 188 56.4
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 1.1e-43 180.6 187 56.7
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 4.3e-43 178.7 193 53.9
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 7.3e-43 177.9 190 54.7
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 9.5e-43 177.6 193 52.8
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.1e-42 176.4 134 67.2
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 2.8e-42 176.0 132 67.4
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.8e-42 176.0 132 67.4
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 6.2e-42 174.9 184 57.6
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.0e-41 174.1 185 49.7
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.0e-41 174.1 131 67.2
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 1.0e-41 174.1 194 51.5
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 1.0e-41 174.1 194 51.5
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 3.1e-41 172.6 132 65.9
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.1e-41 172.6 197 52.3
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 5.2e-41 171.8 195 52.3
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 2.6e-40 169.5 132 65.2
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 4.4e-40 168.7 187 50.3
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 1.3e-39 167.2 193 52.3
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 6.4e-39 164.9 176 52.3
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 2.4e-38 162.9 170 52.4
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 4.1e-38 162.2 179 52.5
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 9.2e-38 161.0 187 47.6
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 9.2e-38 161.0 126 65.9
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 9.2e-38 161.0 136 61.8
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 2.7e-37 159.5 183 53.0
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 4.6e-37 158.7 192 47.9
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.3e-36 157.1 156 52.6
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.3e-36 157.1 109 70.6
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.7e-36 156.8 123 63.4
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 2.3e-36 156.4 142 59.2
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.1e-35 154.1 184 46.7
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.1e-35 154.1 156 56.4
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.3e-35 152.1 185 47.0
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 5.6e-35 151.8 190 48.4
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 9.5e-35 151.0 108 70.4
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 9.5e-35 151.0 189 47.6
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 2.8e-34 149.4 146 53.4
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 3.6e-34 149.1 157 53.5
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 4.7e-34 148.7 154 50.0
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 4.7e-34 148.7 154 50.0
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 6.2e-34 148.3 201 43.8
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 6.2e-34 148.3 132 58.3
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.4e-33 147.1 154 49.4
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.4e-33 147.1 154 49.4
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.4e-33 147.1 146 52.7
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 1.8e-33 146.7 197 44.2
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 1.8e-33 146.7 190 44.2
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 1.8e-33 146.7 190 44.2
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 3.1e-33 146.0 194 44.3
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 2.6e-32 142.9 200 44.5
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 2.6e-32 142.9 184 44.6
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 3.4e-32 142.5 187 43.9
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 7.5e-32 141.4 165 47.9
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 2.9e-31 139.4 184 44.6
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 3.7e-31 139.0 184 44.0
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 4.9e-31 138.7 137 51.1
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 8.3e-31 137.9 188 42.0
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 8.3e-31 137.9 178 47.2
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 8.3e-31 137.9 102 66.7
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.9e-30 136.7 184 42.4
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 2.4e-30 136.3 121 55.4
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 7.1e-30 134.8 101 66.3
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.7e-29 132.9 193 43.5
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 7.8e-29 131.3 111 55.0
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.7e-28 130.2 99 61.6
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.0e-28 129.4 179 44.7
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 5.1e-28 128.6 164 42.7
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 8.6e-28 127.9 121 51.2
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 1.2e-24 117.5 256 37.5
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.3e-23 114.0 132 49.2
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.2e-23 113.2 132 49.2
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 1.1e-22 110.9 114 49.1
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.4e-22 110.5 159 45.3
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.9e-22 110.2 129 51.9
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.9e-22 110.2 140 47.1
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.0e-20 104.4 184 38.6
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 7.3e-19 98.2 78 61.5
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 8.4e-15 84.7 180 33.3
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 1.1e-14 84.3 56 76.8
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 3.9e-12 75.9 134 35.8
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 6.6e-12 75.1 108 38.9
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 2.0e-08 63.5 129 29.5
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 5.8e-08 62.0 114 34.2
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.4e-06 57.4 109 34.9
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 1.9e-06 57.0 109 34.9
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 3.2e-06 56.2 107 30.8
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 4.2e-06 55.8 109 33.9
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 7.1e-06 55.1 109 33.0


User provided reference genes

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