Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.9e-42 174.9 91 100.0
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 4.8e-29 131.0 96 76.0
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 1.3e-26 122.9 96 70.8
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 2.4e-20 102.1 91 60.4
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 4.1e-20 101.3 95 56.8
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-19 99.8 91 61.5
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-19 99.4 91 60.4
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 2.0e-19 99.0 65 75.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.6e-19 98.6 91 60.4
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 4.5e-19 97.8 91 57.1
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 5.9e-19 97.4 91 58.2
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 5.9e-19 97.4 91 59.3
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.2e-18 95.5 96 58.3
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.9e-18 95.1 96 59.4
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 3.8e-18 94.7 92 60.9
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 5.0e-18 94.4 83 63.9
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 5.0e-18 94.4 92 58.7
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.0e-18 94.4 95 56.8
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-17 93.2 91 60.4
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-17 92.8 91 59.3
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.2e-17 91.3 97 53.6
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.2e-17 91.3 93 53.8
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 7.2e-17 90.5 95 53.7
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.1e-16 89.0 98 57.1
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.1e-16 89.0 97 52.6
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.6e-16 88.2 96 52.1
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.1e-16 87.4 96 46.9
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 6.1e-16 87.4 95 53.7
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 7.9e-16 87.0 96 55.2
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-15 86.3 92 55.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-15 86.3 92 55.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.8e-15 85.9 96 55.2
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.8e-15 85.9 95 51.6
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.9e-15 84.7 96 54.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 8.8e-15 83.6 96 52.1
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 8.8e-15 83.6 91 53.8
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-14 83.2 96 49.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.5e-14 82.8 96 53.1
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.9e-14 82.4 83 55.4
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.9e-14 82.4 86 55.8
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.9e-14 82.4 94 54.3
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.2e-13 79.0 90 45.6
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.2e-13 79.0 95 50.5
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 2.8e-13 78.6 82 51.2
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 3.7e-13 78.2 96 49.0
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 3.7e-13 78.2 81 54.3
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.8e-13 77.8 97 50.5
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 4.8e-13 77.8 89 48.3
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 6.3e-13 77.4 88 47.7
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 8.2e-13 77.0 95 50.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.1e-12 76.6 85 47.1
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 1.1e-12 76.6 91 50.5
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-12 76.6 92 53.3
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 2.4e-12 75.5 99 48.5
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 3.1e-12 75.1 90 53.3
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.1e-12 75.1 85 50.6
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.1e-12 75.1 86 52.3
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 4.1e-12 74.7 95 46.3
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 5.3e-12 74.3 91 46.2
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 5.3e-12 74.3 83 50.6
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.2e-11 73.2 99 47.5
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 1.2e-11 73.2 93 47.3
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-11 72.8 86 47.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.0e-11 72.4 85 49.4
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 2.6e-11 72.0 96 45.8
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 3.4e-11 71.6 44 70.5
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 5.9e-11 70.9 92 45.7
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.0e-10 70.1 87 42.5
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.0e-10 70.1 99 48.5
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.0e-10 70.1 64 56.2
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.7e-10 69.3 85 47.1
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.2e-10 68.9 83 44.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 2.9e-10 68.6 82 41.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.9e-10 68.6 91 44.0
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 2.9e-10 68.6 81 49.4
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 2.9e-10 68.6 86 46.5
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 5.0e-10 67.8 84 50.0
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 5.0e-10 67.8 83 48.2
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 5.0e-10 67.8 65 55.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 6.5e-10 67.4 93 47.3
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 6.5e-10 67.4 61 54.1
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 8.5e-10 67.0 84 46.4
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 8.5e-10 67.0 104 42.3
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.1e-09 66.6 82 51.2
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-09 66.6 83 48.2
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-09 66.6 83 43.4
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.4e-09 66.2 89 43.8
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 1.4e-09 66.2 92 42.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.4e-09 66.2 88 45.5
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 2.5e-09 65.5 91 46.2
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.5e-09 65.5 92 42.4
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.2e-09 65.1 80 41.2
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 3.2e-09 65.1 91 44.0
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 3.2e-09 65.1 94 39.4
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.2e-09 64.7 87 46.0
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 5.5e-09 64.3 87 44.8
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 5.5e-09 64.3 94 40.4
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.5e-09 64.3 81 48.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.5e-09 64.3 78 46.2
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 5.5e-09 64.3 104 43.3
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 7.2e-09 63.9 92 40.2
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 9.4e-09 63.5 93 48.4
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 9.4e-09 63.5 94 43.6
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.4e-09 63.5 81 48.1
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-08 63.2 82 41.5
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 1.2e-08 63.2 82 41.5
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-08 63.2 83 42.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-08 62.8 91 46.2
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 1.6e-08 62.8 85 43.5
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.1e-08 62.4 80 47.5
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.7e-08 62.0 53 56.6
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.7e-08 62.0 89 43.8
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.7e-08 62.0 89 37.1
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.7e-08 62.0 90 43.3
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.6e-08 61.6 84 45.2
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 3.6e-08 61.6 89 48.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 3.6e-08 61.6 63 49.2
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 4.7e-08 61.2 96 44.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 4.7e-08 61.2 96 44.8
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 4.7e-08 61.2 87 40.2
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 4.7e-08 61.2 87 40.2
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 4.7e-08 61.2 98 44.9
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.7e-08 61.2 91 40.7
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.1e-08 60.8 82 46.3
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 6.1e-08 60.8 87 43.7
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.9e-08 60.5 53 56.6
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 1.0e-07 60.1 92 42.4
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 1.0e-07 60.1 95 40.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.4e-07 59.7 104 40.4
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.4e-07 59.7 87 48.3
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.4e-07 59.7 89 42.7
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 88 38.6
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 1.4e-07 59.7 97 43.3
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-07 59.7 87 44.8
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-07 59.7 64 48.4
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.8e-07 59.3 96 41.7
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 89 38.2
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.8e-07 59.3 92 40.2
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.3e-07 58.9 78 41.0
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.0e-07 58.5 48 52.1
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.0e-07 58.5 79 44.3
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 3.9e-07 58.2 78 42.3
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.9e-07 58.2 78 42.3
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 3.9e-07 58.2 87 42.5
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 3.9e-07 58.2 80 41.2
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 3.9e-07 58.2 91 40.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 5.1e-07 57.8 98 36.7
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.1e-07 57.8 37 70.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.1e-07 57.8 78 42.3
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.1e-07 57.8 78 42.3
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.1e-07 57.8 46 58.7
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 6.7e-07 57.4 97 42.3
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 6.7e-07 57.4 85 38.8
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 8.8e-07 57.0 95 43.2
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.1e-06 56.6 41 65.9
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.1e-06 56.6 78 46.2
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-06 56.6 82 41.5
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 1.5e-06 56.2 90 40.0
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.0e-06 55.8 95 44.2
Os12g0147800 Oryza sativa ssp. japonica HOM05D021295 ORTHO05D023052 2.0e-06 55.8 65 47.7
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 3.3e-06 55.1 87 40.2
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 4.4e-06 54.7 49 57.1
ECA240G4721 Erigeron canadensis HOM05D006380 ORTHO05D008400 4.4e-06 54.7 37 64.9
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 5.7e-06 54.3 95 40.0
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.7e-06 54.3 45 57.8
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 5.7e-06 54.3 88 36.4
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.4e-06 53.9 90 37.8
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 9.7e-06 53.5 35 65.7


User provided reference genes

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