Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 3.3e-98 361.7 180 100.0
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.1e-92 342.4 180 95.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.1e-92 342.4 180 95.0
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.7e-84 315.5 180 85.0
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.3e-83 313.2 180 84.4
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 5.3e-80 301.2 180 83.3
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 9.0e-80 300.4 179 84.9
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 2.6e-79 298.9 179 83.8
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 2.6e-79 298.9 180 83.3
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 3.4e-79 298.5 180 81.1
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.5e-79 298.1 181 84.5
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 5.8e-79 297.7 180 84.4
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 7.6e-79 297.4 180 80.6
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 1.0e-78 297.0 179 84.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.9e-78 295.4 180 81.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-78 294.3 180 80.6
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 8.4e-78 293.9 180 80.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 2.5e-77 292.4 180 81.7
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.5e-77 292.4 180 81.7
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 2.5e-77 292.4 180 80.6
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.5e-77 292.4 181 81.8
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.5e-77 291.2 180 82.8
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 5.5e-77 291.2 185 78.4
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 5.5e-77 291.2 178 79.8
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.1e-77 290.8 181 82.9
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 7.1e-77 290.8 181 82.9
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 7.1e-77 290.8 180 80.6
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 1.2e-76 290.0 203 75.4
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.2e-76 290.0 180 81.7
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 1.6e-76 289.7 180 81.1
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 2.1e-76 289.3 161 88.2
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 2.7e-76 288.9 178 77.5
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-76 288.5 180 81.7
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 4.6e-76 288.1 180 79.4
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 6.0e-76 287.7 180 80.0
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 7.9e-76 287.3 180 78.9
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 7.9e-76 287.3 161 87.6
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 7.9e-76 287.3 179 79.9
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 7.9e-76 287.3 179 79.9
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.0e-75 287.0 173 85.0
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.0e-75 287.0 180 78.9
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.0e-75 287.0 180 79.4
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 2.3e-75 285.8 161 87.0
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 3.0e-75 285.4 180 79.4
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 181 80.1
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.9e-75 285.0 180 78.3
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 5.1e-75 284.6 180 78.3
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 6.7e-75 284.3 184 77.7
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 6.7e-75 284.3 172 82.0
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 8.7e-75 283.9 180 78.3
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 1.1e-74 283.5 175 81.7
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.1e-74 283.5 175 81.7
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 1.9e-74 282.7 173 82.1
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 1.9e-74 282.7 173 83.2
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 3.3e-74 282.0 179 78.2
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 5.7e-74 281.2 159 86.2
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 5.7e-74 281.2 180 78.3
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 7.4e-74 280.8 158 87.3
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 7.4e-74 280.8 183 77.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 9.6e-74 280.4 173 82.7
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 9.6e-74 280.4 161 85.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.6e-73 279.6 159 85.5
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.1e-73 279.3 161 85.7
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.8e-73 278.9 159 86.8
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 2.8e-73 278.9 179 76.0
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 3.7e-73 278.5 158 84.8
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.7e-73 278.5 159 85.5
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.8e-73 278.1 178 78.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 6.3e-73 277.7 186 76.3
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 1.1e-72 276.9 158 84.8
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.8e-72 276.2 179 77.1
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.8e-72 276.2 161 82.6
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 1.8e-72 276.2 159 84.9
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.8e-72 276.2 178 77.0
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.8e-72 276.2 181 76.8
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.4e-72 275.8 159 85.5
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 3.1e-72 275.4 169 82.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.1e-72 275.4 169 82.2
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 4.1e-72 275.0 153 88.9
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 5.3e-72 274.6 180 77.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 9.0e-72 273.9 145 93.1
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 9.0e-72 273.9 180 73.3
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.0e-71 272.7 161 82.6
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.6e-71 272.3 160 84.4
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 3.4e-71 271.9 159 84.9
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.4e-71 271.9 159 84.9
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.4e-71 271.9 180 74.4
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 4.5e-71 271.6 190 74.2
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 4.5e-71 271.6 172 79.7
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 1.0e-70 270.4 159 82.4
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.2e-70 269.2 180 73.9
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.9e-70 268.9 176 76.1
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.5e-70 267.3 145 90.3
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 1.9e-69 266.2 178 74.7
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 7.2e-69 264.2 145 88.3
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 9.3e-69 263.8 177 74.0
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.2e-68 263.5 180 71.1
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 2.1e-68 262.7 175 73.7
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.7e-68 262.3 171 77.8
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.6e-68 261.9 146 87.0
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-67 260.0 177 72.9
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 3.9e-67 258.5 170 75.3
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.5e-66 256.5 137 92.7
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-66 256.5 178 71.9
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.5e-66 255.8 144 86.8
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.6e-65 253.1 142 86.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.8e-65 252.3 148 84.5
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 3.7e-65 251.9 140 86.4
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.4e-64 250.0 177 68.9
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 9.1e-64 247.3 158 77.2
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 2.6e-63 245.7 173 74.6
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 3.8e-62 241.9 175 69.7
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 5.0e-62 241.5 137 88.3
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 4.2e-61 238.4 176 70.5
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.6e-60 236.5 180 70.0
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 8.8e-59 230.7 164 69.5
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.0e-55 219.5 135 81.5
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.2e-53 211.1 155 71.0
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 1.2e-52 210.3 165 66.7
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.7e-52 209.1 171 58.5
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 3.7e-49 198.7 109 89.9
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 3.7e-49 198.7 161 57.8
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 3.1e-48 195.7 110 85.5
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 3.1e-48 195.7 141 71.6
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 4.1e-48 195.3 117 85.5
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.0e-46 190.7 117 77.8
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.6e-44 182.2 113 80.5
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.7e-41 172.2 128 68.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 9.1e-40 167.5 111 73.0
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 2.0e-39 166.4 151 55.0
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 5.9e-39 164.9 100 80.0
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.2e-34 150.6 77 90.9
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.3e-33 147.1 130 61.5
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.7e-33 146.7 119 64.7
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.2e-33 146.4 119 64.7
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 3.5e-31 139.0 188 46.8
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 3.8e-30 135.6 93 72.0
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.0e-30 135.2 77 80.5
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.6e-30 134.4 68 91.2
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.5e-29 132.9 77 83.1
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 8.0e-28 127.9 153 49.7
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.4e-26 122.5 85 74.1
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 8.3e-25 117.9 120 59.2
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 2.0e-23 113.2 64 89.1
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 8.0e-20 101.3 77 66.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.6e-18 96.3 52 86.5
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 1.7e-17 93.6 66 71.2
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 7.0e-16 88.2 58 70.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.0e-14 84.3 58 74.1
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 4.6e-07 58.9 33 84.8


User provided reference genes

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