Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 6.9e-93 344.4 229 100.0
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.5e-79 300.1 230 82.6
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 3.7e-78 295.4 230 83.9
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 8.2e-78 294.3 230 79.1
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 1.8e-77 293.1 230 76.1
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 2.9e-75 285.8 230 80.4
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.9e-75 285.8 226 78.3
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 8.5e-75 284.3 226 80.5
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 8.5e-75 284.3 230 78.7
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 4.2e-74 282.0 230 81.7
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 1.0e-72 277.3 258 78.3
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 1.0e-72 277.3 228 68.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.4e-72 276.9 230 74.3
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 2.3e-72 276.2 230 77.8
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 6.7e-72 274.6 231 78.4
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 1.5e-71 273.5 231 79.2
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 2.0e-71 273.1 231 77.9
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 3.3e-71 272.3 228 75.9
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 5.7e-71 271.6 230 77.4
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 7.4e-71 271.2 226 75.7
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 7.4e-71 271.2 230 77.4
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.3e-70 270.4 230 78.7
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.3e-70 270.4 230 78.7
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 1.3e-70 270.4 228 73.2
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 3.7e-70 268.9 228 78.1
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.1e-69 267.3 226 77.4
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 3.1e-69 265.8 230 76.5
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 5.9e-68 261.5 229 73.4
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 7.7e-68 261.2 228 77.6
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.7e-67 260.0 228 70.2
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.2e-67 259.6 228 72.4
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 2.2e-67 259.6 229 74.2
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.9e-66 256.5 229 74.2
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 3.2e-66 255.8 228 75.4
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 5.5e-66 255.0 230 76.5
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.2e-65 253.8 227 76.7
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.1e-65 253.1 230 77.0
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 3.6e-65 252.3 222 81.1
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 4.7e-65 251.9 228 73.2
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.4e-64 250.4 230 77.0
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.2e-63 247.3 230 73.5
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 3.4e-63 245.7 228 71.1
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 4.4e-63 245.4 225 70.2
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 5.7e-63 245.0 228 72.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.5e-63 244.6 225 73.8
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 9.7e-63 244.2 225 68.0
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.3e-62 243.8 228 71.5
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.3e-62 243.8 229 67.2
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 2.8e-62 242.7 230 74.3
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.8e-62 242.7 229 66.8
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 3.7e-62 242.3 230 76.5
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 3.7e-62 242.3 226 75.2
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.1e-61 240.7 225 74.2
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.4e-61 240.4 246 68.3
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 9.1e-61 237.7 226 70.4
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 2.7e-60 236.1 229 69.4
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 3.5e-60 235.7 228 73.7
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 4.5e-60 235.3 249 66.3
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 5.9e-60 235.0 229 72.1
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 7.7e-60 234.6 230 70.4
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 7.7e-60 234.6 235 67.7
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 1.0e-59 234.2 226 74.3
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.3e-59 233.8 225 70.2
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 2.2e-59 233.0 230 70.9
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.2e-59 233.0 230 70.9
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.2e-59 233.0 227 78.4
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 6.5e-59 231.5 229 71.2
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.1e-58 230.7 228 70.2
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 1.1e-58 230.7 230 71.7
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.2e-58 229.2 229 70.3
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.2e-57 227.3 230 74.8
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 4.7e-57 225.3 230 71.7
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 1.0e-56 224.2 227 63.9
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 3.0e-56 222.6 230 68.7
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 230 72.6
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 4.0e-56 222.2 230 70.9
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.2e-55 220.7 230 69.1
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 2.6e-55 219.5 225 65.8
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 7.5e-55 218.0 231 70.6
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.8e-54 216.1 229 70.3
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.8e-54 215.3 154 76.0
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 4.8e-54 215.3 237 70.9
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 8.3e-54 214.5 228 65.8
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 8.3e-54 214.5 233 57.9
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.1e-53 214.2 228 68.4
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 1.8e-53 213.4 228 66.7
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 3.1e-53 212.6 226 72.6
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.2e-52 210.7 227 59.5
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 3.5e-52 209.1 233 67.0
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 1.7e-51 206.8 230 68.7
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.9e-51 206.1 223 54.7
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 3.8e-51 205.7 230 67.4
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 6.6e-51 204.9 228 63.2
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 6.6e-51 204.9 329 53.8
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 1.9e-50 203.4 230 63.0
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.3e-50 202.6 227 68.3
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 1.2e-47 194.1 230 70.4
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.4e-47 192.6 228 62.3
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 5.7e-47 191.8 228 62.3
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 7.5e-47 191.4 229 49.8
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 2.2e-46 189.9 226 66.4
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 2.2e-46 189.9 226 66.4
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.2e-46 189.9 225 68.0
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 4.9e-46 188.7 226 66.8
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.9e-46 188.7 225 66.7
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 4.9e-46 188.7 230 67.8
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 6.3e-46 188.3 227 66.1
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.1e-45 187.6 225 66.7
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.8e-45 186.8 225 60.9
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 4.1e-45 185.7 226 66.4
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 9.2e-45 184.5 226 65.9
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.5e-44 182.6 228 55.3
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 2.9e-43 179.5 226 62.8
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 2.3e-40 169.9 211 64.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 6.8e-40 168.3 227 63.9
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 4.9e-38 162.2 99 77.8
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 8.0e-33 144.8 188 56.4
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.7e-30 137.1 232 44.0
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 3.5e-28 129.4 225 48.9
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 3.5e-28 129.4 66 90.9
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 6.0e-28 128.6 232 42.2
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 2.8e-25 119.8 95 64.2
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.6e-25 119.4 105 67.6
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 2.0e-23 113.6 68 79.4
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.5e-18 97.4 224 36.2
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 9.6e-18 94.7 225 34.7
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 6.8e-16 88.6 232 40.9
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 2.4e-13 80.1 155 39.4
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 4.3e-10 69.3 164 42.1
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 8.1e-09 65.1 40 75.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 5.3e-08 62.4 79 45.6


User provided reference genes

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