Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 4.5e-272 940.6 474 100.0
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.4e-201 706.4 472 78.6
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 4.5e-163 578.6 480 62.1
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 9.8e-150 534.3 426 63.1
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.5e-142 510.4 457 58.4
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 3.1e-140 502.7 418 60.8
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.0e-139 500.0 467 56.7
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 3.5e-139 499.2 419 59.4
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 1.0e-138 497.7 453 57.0
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 1.7e-138 496.9 443 57.3
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 5.0e-138 495.4 457 56.5
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 1.5e-137 493.8 457 56.2
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 4.3e-137 492.3 441 58.5
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.4e-135 487.3 441 56.7
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 5.2e-135 485.3 426 58.7
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 5.2e-135 485.3 456 55.3
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 6.8e-135 485.0 423 56.7
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 8.9e-135 484.6 418 59.6
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 8.9e-135 484.6 418 59.6
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 3.4e-134 482.6 479 54.3
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.7e-133 480.3 423 58.2
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 1.7e-133 480.3 419 55.8
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 2.9e-133 479.6 418 57.4
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.1e-132 477.6 463 55.1
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 1.8e-132 476.9 420 56.9
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 5.9e-131 471.9 418 56.7
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 5.0e-130 468.8 426 56.3
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 4.3e-129 465.7 457 53.8
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 7.3e-129 464.9 460 53.7
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 7.3e-129 464.9 418 55.3
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 2.8e-128 463.0 457 54.7
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 3.6e-128 462.6 427 54.6
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 6.8e-127 458.4 444 53.4
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 6.8e-127 458.4 444 53.4
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 8.9e-127 458.0 419 55.1
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 1.2e-126 457.6 418 54.5
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 1.2e-126 457.6 418 54.5
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 4.4e-126 455.7 420 55.0
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 7.5e-126 454.9 418 55.3
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.7e-125 453.8 420 54.8
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-124 450.3 420 54.8
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 7.0e-124 448.4 429 53.4
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.0e-124 448.4 420 54.3
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 4.6e-123 445.7 452 53.3
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 4.3e-121 439.1 423 54.4
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 1.4e-119 434.1 418 53.1
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 1.4e-119 434.1 420 54.0
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 4.0e-119 432.6 420 53.6
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 5.8e-118 428.7 459 48.4
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 2.9e-117 426.4 425 53.2
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 8.3e-117 424.9 422 52.4
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 8.3e-117 424.9 431 55.0
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 5.4e-116 422.2 422 52.1
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 4.3e-113 412.5 420 50.5
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 6.2e-112 408.7 450 49.6
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 8.9e-111 404.8 443 48.5
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.2e-110 404.4 419 49.2
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 9.9e-110 401.4 442 48.6
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 1.3e-109 401.0 449 46.3
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.7e-109 400.6 418 50.2
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 2.4e-108 396.7 446 49.1
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 4.1e-108 396.0 441 47.6
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 5.4e-108 395.6 355 56.1
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.2e-108 394.8 419 49.6
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 6.0e-107 392.1 475 44.2
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.8e-107 391.7 354 54.5
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 5.1e-106 389.0 447 47.0
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.1e-105 387.9 421 48.0
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 4.7e-104 382.5 439 48.1
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 1.1e-103 381.3 422 47.9
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 3.8e-101 372.9 461 46.6
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 7.8e-99 365.2 418 48.3
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 1.7e-98 364.0 360 52.5
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 3.9e-98 362.8 422 45.5
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 8.7e-98 361.7 419 47.0
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 7.6e-94 348.6 436 46.6
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 7.1e-92 342.0 440 42.3
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 2.7e-91 340.1 419 42.7
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.5e-86 324.3 321 53.0
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 2.6e-86 323.6 449 43.0
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 1.3e-85 321.2 421 44.2
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 6.4e-85 318.9 418 44.3
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.4e-84 317.8 450 43.8
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 4.2e-84 316.2 467 43.0
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 1.0e-82 311.6 418 42.8
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.3e-82 311.2 418 42.8
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 3.0e-82 310.1 418 43.1
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 3.9e-82 309.7 418 43.1
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 4.3e-81 306.2 423 41.1
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 4.8e-80 302.8 300 52.3
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.8e-79 300.8 420 40.0
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 5.7e-73 279.3 250 55.2
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 1.1e-71 275.0 479 35.9
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 1.6e-67 261.2 396 39.1
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.9e-65 254.2 216 59.7
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.7e-65 251.9 236 53.8
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.3e-64 251.5 283 47.3
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 3.8e-61 240.0 404 37.1
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 5.3e-55 219.5 414 34.5
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.2e-51 208.4 186 55.4
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.7e-43 180.6 176 49.4
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.2e-36 156.0 171 47.4
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 5.9e-30 136.3 177 40.7
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 4.2e-28 130.2 140 47.1
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 5.5e-28 129.8 371 25.9
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 1.2e-27 128.6 361 25.8
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 6.8e-26 122.9 139 43.9
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 9.8e-25 119.0 190 39.5
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 4.9e-24 116.7 123 42.3
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.9e-24 116.7 123 42.3
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.9e-24 116.7 144 42.4
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.1e-23 114.0 172 38.4
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 3.3e-20 104.0 124 39.5
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 4.3e-20 103.6 134 41.8
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.2e-19 102.1 213 30.0
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 4.0e-18 97.1 122 37.7
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 4.1e-15 87.0 113 45.1
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 4.3e-12 77.0 93 39.8
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 4.7e-11 73.6 107 36.4
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 7.5e-09 66.2 91 37.4
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 3.7e-08 63.9 95 33.7
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 3.7e-08 63.9 112 27.7
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 3.7e-08 63.9 112 27.7
Os12g0562300 Oryza sativa ssp. japonica HOM05D004127 ORTHO05D005119 4.9e-08 63.5 100 31.0
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 1.4e-07 62.0 140 30.0
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 1.9e-07 61.6 100 31.0
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 2.4e-07 61.2 168 33.3
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 2.4e-07 61.2 55 60.0
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 2.4e-07 61.2 91 35.2
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 7.0e-07 59.7 62 45.2
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 9.2e-07 59.3 274 22.6
TAR626G0509 Trochodendron aralioides HOM05D002244 ORTHO05D002269 1.6e-06 58.5 285 22.1
Aqoxy2G02534 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 2.1e-06 58.2 179 27.9
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 2.1e-06 58.2 100 27.0
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 2.1e-06 58.2 100 27.0
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 2.1e-06 58.2 100 28.0
TAR633G0691 Trochodendron aralioides HOM05D016421 ORTHO05D018216 2.1e-06 58.2 107 29.9
BcaC07g39673 Brassica carinata HOM05D001779 ORTHO05D001753 2.7e-06 57.8 100 28.0
C08p28390 Brassica napus HOM05D001779 ORTHO05D001753 2.7e-06 57.8 100 28.0
BolC8t50449H Brassica oleracea HOM05D001779 ORTHO05D001753 2.7e-06 57.8 100 28.0
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 2.7e-06 57.8 237 22.8
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 4.6e-06 57.0 179 26.3
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 4.6e-06 57.0 91 28.6
CAN.G141.7 Capsicum annuum HOM05D000001 ORTHO05D009726 6.0e-06 56.6 146 24.7
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 6.0e-06 56.6 205 24.9


User provided reference genes

Program Settings