Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G136501 Populus trichocarpa HOM05D001448 ORTHO05D034881 5.6e-89 330.9 163 100.0
Sabra14G0095100 Salix brachista HOM05D001448 ORTHO05D007650 3.0e-34 149.1 227 44.1
Potri.014G128200 Populus trichocarpa HOM05D001448 ORTHO05D007650 8.8e-34 147.5 227 44.1
CiPaw.07G110000 Carya illinoinensis HOM05D001448 ORTHO05D007650 2.4e-31 139.4 229 41.0
Manes.01G220000 Manihot esculenta HOM05D001448 ORTHO05D007650 4.5e-30 135.2 227 40.1
Sed0003234 Sechium edule HOM05D001448 ORTHO05D007650 7.7e-30 134.4 224 41.1
Lj1C23T18 Lonicera japonica HOM05D001448 ORTHO05D007650 1.0e-29 134.0 226 40.7
QL12p028362 Quercus lobata HOM05D001448 ORTHO05D007650 1.3e-29 133.7 228 39.9
Dinv19684 Davidia involucrata HOM05D001448 ORTHO05D007650 1.1e-28 130.6 229 38.4
TAR636G0525 Trochodendron aralioides HOM05D001448 ORTHO05D007650 5.5e-28 128.3 226 39.4
TAR636G2196 Trochodendron aralioides HOM05D001448 ORTHO05D007650 7.2e-28 127.9 229 38.4
Hma1.2p1_0491F.1_g164660 Hydrangea macrophylla HOM05D001448 ORTHO05D007650 9.5e-28 127.5 229 39.3
EL10Ac7g17524 Beta vulgaris HOM05D001448 ORTHO05D007650 1.6e-27 126.7 226 37.6
CsaV3_7G029320 Cucumis sativus L. HOM05D001448 ORTHO05D007650 2.1e-27 126.3 224 39.7
Prupe.8G262600 Prunus persica HOM05D001448 ORTHO05D007650 2.1e-27 126.3 229 39.7
CSS0005794 Camellia sinensis var. sinensis HOM05D001448 ORTHO05D007650 3.6e-27 125.6 229 39.3
TWI59G1163 Tripterygium wilfordii HOM05D001448 ORTHO05D007650 4.7e-27 125.2 224 37.9
DCAR_012388 Daucus carota HOM05D001448 ORTHO05D007650 6.1e-27 124.8 226 38.9
Eucgr.H01106 Eucalyptus grandis HOM05D001448 ORTHO05D007650 1.0e-26 124.0 229 38.4
Thecc.01G301600 Theobroma cacao HOM05D001448 ORTHO05D007650 1.0e-26 124.0 224 38.8
MELO3C015996.2 Cucumis melo HOM05D001448 ORTHO05D007650 2.3e-26 122.9 224 40.2
Migut.D00147 Erythranthe guttata HOM05D001448 ORTHO05D007650 2.3e-26 122.9 224 38.8
Gorai.007G127600 Gossypium raimondii HOM05D001448 ORTHO05D007650 2.3e-26 122.9 229 37.6
vmacro02445 Vaccinium macrocarpon HOM05D001448 ORTHO05D007650 2.3e-26 122.9 224 38.8
GSVIVG01028029001 Vitis vinifera HOM05D001448 ORTHO05D007650 2.3e-26 122.9 228 37.7
AUR62025568 Chenopodium quinoa HOM05D001448 ORTHO05D007650 3.0e-26 122.5 229 36.7
PGR119G0994 Punica granatum HOM05D001448 ORTHO05D007650 3.0e-26 122.5 229 39.7
Ciclev10019312m.g Citrus clementina HOM05D001448 ORTHO05D007650 6.8e-26 121.3 226 38.5
Sed0021740 Sechium edule HOM05D001448 ORTHO05D007650 6.8e-26 121.3 223 38.1
Rhsim13G0009500 Rhododendron simsii HOM05D001448 ORTHO05D007650 8.9e-26 120.9 210 40.5
SalBow3G2153 Salvia bowleyana HOM05D001448 ORTHO05D007650 1.5e-25 120.2 224 37.5
FAN20G2072 Fragaria x ananassa HOM05D001448 ORTHO05D007650 3.4e-25 119.0 229 37.1
MD03G1289600 Malus domestica HOM05D001448 ORTHO05D007650 3.4e-25 119.0 226 38.5
Hund05432 Selenicereus undatus HOM05D001448 ORTHO05D007650 3.4e-25 119.0 224 37.9
Actinidia21205 Actinidia chinensis HOM05D001448 ORTHO05D007650 4.4e-25 118.6 229 37.6
TPR.G34005 Trifolium pratense HOM05D001448 ORTHO05D007650 4.4e-25 118.6 223 37.7
Gohir.D11G119100 Gossypium hirsutum HOM05D001448 ORTHO05D007650 5.7e-25 118.2 229 37.1
Sc18g0004000 Simmondsia chinensis HOM05D001448 ORTHO05D007650 5.7e-25 118.2 228 36.4
Ca_10328_v3 Cicer arietinum L. HOM05D001448 ORTHO05D007650 9.8e-25 117.5 229 35.8
HanXRQChr01g0001321 Helianthus annuus HOM05D001448 ORTHO05D007650 9.8e-25 117.5 224 36.2
Lalb_Chr06g0166511 Lupinus albus HOM05D001448 ORTHO05D007650 9.8e-25 117.5 223 37.2
MD03G1289500 Malus domestica HOM05D001448 ORTHO05D007650 9.8e-25 117.5 226 38.1
FvH4_2g25840 Fragaria vesca HOM05D001448 ORTHO05D007650 1.3e-24 117.1 229 37.1
FAN24G0272 Fragaria x ananassa HOM05D001448 ORTHO05D007650 1.3e-24 117.1 229 37.1
THA.LOC104801277 Tarenaya hassleriana HOM05D001448 ORTHO05D007650 1.3e-24 117.1 229 36.7
Oeu046674.1 Olea europaea HOM05D001448 ORTHO05D007650 2.2e-24 116.3 224 36.2
Psat6g164760 Pisum sativum HOM05D001448 ORTHO05D007650 2.2e-24 116.3 220 35.9
Cpa.g.sc9.254 Carica papaya HOM05D001448 ORTHO05D007650 2.8e-24 115.9 229 37.6
MBI18_g45178_MAGBIO Magnolia biondii HOM05D001448 ORTHO05D007650 4.9e-24 115.2 223 38.1
Cc01_g20930 Coffea canephora HOM05D001448 ORTHO05D007650 6.3e-24 114.8 226 35.4
FAN15G1191 Fragaria x ananassa HOM05D001448 ORTHO05D007650 6.3e-24 114.8 229 36.7
AUR62008678 Chenopodium quinoa HOM05D001448 ORTHO05D007650 8.3e-24 114.4 229 36.7
FAN27G0114 Fragaria x ananassa HOM05D001448 ORTHO05D007650 8.3e-24 114.4 229 36.7
HPP92_018257 Vanilla planifolia HOM05D001448 ORTHO05D007650 1.1e-23 114.0 228 36.0
Lsat_1_v5_gn_5_190980 Lactuca sativa HOM05D001448 ORTHO05D007650 1.4e-23 113.6 221 36.7
Haze_04948 Corylus avellana HOM05D001448 ORTHO05D007650 2.4e-23 112.8 258 34.9
ATR0706G118 Amborella trichopoda HOM05D001448 ORTHO05D007650 3.2e-23 112.5 226 34.5
A03p31090 Brassica napus HOM05D001448 ORTHO05D007650 3.2e-23 112.5 229 36.2
BraA03t12286Z Brassica rapa HOM05D001448 ORTHO05D007650 3.2e-23 112.5 229 36.2
C03p37900 Brassica napus HOM05D001448 ORTHO05D007650 4.1e-23 112.1 229 35.8
Glyma.10G017700 Glycine max HOM05D001448 ORTHO05D007650 4.1e-23 112.1 220 36.8
Lj5g0009959 Lotus japonicus HOM05D001448 ORTHO05D007650 4.1e-23 112.1 223 35.0
Nn3g21510 Nelumbo nucifera HOM05D001448 ORTHO05D007650 5.4e-23 111.7 229 35.8
PSO170G4471 Papaver somniferum HOM05D001448 ORTHO05D007650 5.4e-23 111.7 224 36.2
BcaC01g06762 Brassica carinata HOM05D001448 ORTHO05D007650 7.0e-23 111.3 229 35.4
BolC3t16078H Brassica oleracea HOM05D001448 ORTHO05D007650 7.0e-23 111.3 229 35.4
Glyma.02G017200 Glycine max HOM05D001448 ORTHO05D007650 7.0e-23 111.3 153 47.1
Zm00001eb341090 Zea mays HOM05D001448 ORTHO05D007650 7.0e-23 111.3 223 34.5
RcHm_v2.0_Chr6g0294171 Rosa chinensis HOM05D001448 ORTHO05D007650 1.6e-22 110.2 224 36.6
ECA248G3972 Erigeron canadensis HOM05D001448 ORTHO05D007650 2.7e-22 109.4 224 35.3
MD03G1289400 Malus domestica HOM05D001448 ORTHO05D007650 2.7e-22 109.4 229 35.8
ClCG09G005630 Citrullus lanatus HOM05D001448 ORTHO05D007650 1.3e-21 107.1 283 32.5
Medtr1g088375 Medicago truncatula HOM05D001448 ORTHO05D007650 1.3e-21 107.1 220 35.0
Peaxi162Scf00445g00511 Petunia axillaris HOM05D001448 ORTHO05D007650 1.3e-21 107.1 224 35.3
Sp6g02270 Schrenkiella parvula HOM05D001448 ORTHO05D007650 1.7e-21 106.7 229 34.9
VMungo0720G1165 Vigna mungo HOM05D001448 ORTHO05D007650 1.7e-21 106.7 220 35.9
BcaB01g02445 Brassica carinata HOM05D001448 ORTHO05D007650 2.3e-21 106.3 229 34.9
CAN.G1214.7 Capsicum annuum HOM05D001448 ORTHO05D007650 2.3e-21 106.3 223 36.3
Sopen08g023340 Solanum pennellii HOM05D001448 ORTHO05D007650 3.9e-21 105.5 223 36.3
C02p38910 Brassica napus HOM05D001448 ORTHO05D007650 5.0e-21 105.1 226 34.5
BolC2t09904H Brassica oleracea HOM05D001448 ORTHO05D007650 5.0e-21 105.1 226 34.5
Aa31LG5G2030 Aethionema arabicum HOM05D001448 ORTHO05D007650 6.6e-21 104.8 229 34.5
BraA02t07456Z Brassica rapa HOM05D001448 ORTHO05D007650 6.6e-21 104.8 226 33.6
Thhalv10028509m.g Eutrema salsugineum HOM05D001448 ORTHO05D007650 8.6e-21 104.4 224 34.8
Solyc08g074740.3 Solanum lycopersicum HOM05D001448 ORTHO05D007650 8.6e-21 104.4 223 35.9
AT4G02390 Arabidopsis thaliana HOM05D001448 ORTHO05D007650 1.1e-20 104.0 229 35.4
Os01g0351200 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D007650 1.5e-20 103.6 224 33.5
PGSC0003DMG401030070 Solanum tuberosum HOM05D001448 ORTHO05D007650 1.5e-20 103.6 223 35.4
Carub.0006s3477 Capsella rubella HOM05D001448 ORTHO05D007650 1.9e-20 103.2 229 34.5
AL6G50730 Arabidopsis lyrata HOM05D001448 ORTHO05D007650 2.5e-20 102.8 229 34.9
A02p24650 Brassica napus HOM05D001448 ORTHO05D007650 2.5e-20 102.8 226 34.1
CARHR250580 Cardamine hirsuta HOM05D001448 ORTHO05D007650 2.5e-20 102.8 229 34.1
SGA_v2.0_scaffold1G00360 Striga asiatica HOM05D001448 ORTHO05D007650 2.5e-20 102.8 221 36.2
Phvul.007G218800 Phaseolus vulgaris HOM05D001448 ORTHO05D007650 3.3e-20 102.4 220 34.5
CDE02G4502 Ceratophyllum demersum HOM05D001448 ORTHO05D007650 4.3e-20 102.1 229 34.5
Nitab4.5_0001639g0080 Nicotiana tabacum HOM05D001448 ORTHO05D007650 4.3e-20 102.1 221 35.3
arahy.Tifrunner.gnm1.ann1.US6JKM Arachis hypogaea HOM05D001448 ORTHO05D007650 9.5e-20 100.9 253 30.8
BcaC03g16118 Brassica carinata HOM05D001448 ORTHO05D007650 2.1e-19 99.8 229 33.6
Os01g0351100 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D007650 2.8e-19 99.4 221 34.8
Solyc08g074730.2 Solanum lycopersicum HOM05D001448 ORTHO05D007650 3.6e-19 99.0 224 32.6
arahy.Tifrunner.gnm1.ann1.1TW9IR Arachis hypogaea HOM05D001448 ORTHO05D007650 1.4e-18 97.1 267 29.2
Nitab4.5_0000183g0110 Nicotiana tabacum HOM05D001448 ORTHO05D007650 4.0e-18 95.5 221 33.9
Medtr1g088400 Medicago truncatula HOM05D001448 ORTHO05D007650 5.2e-18 95.1 198 33.3
PGSC0003DMG402030070 Solanum tuberosum HOM05D001448 ORTHO05D007650 5.2e-18 95.1 232 32.3
Gohir.A11G114000 Gossypium hirsutum HOM05D001448 ORTHO05D007650 2.0e-17 93.2 197 35.5
TWI59G0775 Tripterygium wilfordii HOM05D001448 ORTHO05D007650 1.3e-16 90.5 219 34.7
Potri.014G128000 Populus trichocarpa HOM05D001448 ORTHO05D007650 8.3e-16 87.8 224 32.1
SMO364G0756 Selaginella moellendorffii HOM05D001448 ORTHO05D007650 2.7e-14 82.8 225 31.6
Atru.chr5.1137 Acer truncatum HOM05D001448 ORTHO05D007650 3.5e-14 82.4 79 51.9
Atru.chr5.1138 Acer truncatum HOM05D001448 ORTHO05D007650 6.0e-14 81.6 72 63.9
Pp3c22_13240 Physcomitrium patens HOM05D001448 ORTHO05D007650 7.8e-14 81.3 223 28.7
Manes.01G220100 Manihot esculenta HOM05D001448 ORTHO05D007650 3.9e-13 79.0 226 29.2
PSO017G0901 Papaver somniferum HOM05D001448 ORTHO05D007650 3.9e-13 79.0 219 30.6
MD11G1308700 Malus domestica HOM05D001448 ORTHO05D034881 1.9e-12 76.6 92 48.9
Mapoly0074s0022 Marchantia polymorpha HOM05D001448 ORTHO05D007650 2.5e-12 76.3 224 27.7
SMO353G0427 Selaginella moellendorffii HOM05D001448 ORTHO05D007650 5.6e-12 75.1 221 27.6
COL.COLO4_23335 Corchorus olitorius HOM05D001448 ORTHO05D034881 2.0e-09 66.6 45 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1274 Anthoceros agrestis HOM05D001448 ORTHO05D007650 2.6e-09 66.2 221 28.5
CBR_g57225 Chara braunii HOM05D001448 ORTHO05D007650 2.9e-08 62.8 88 47.7
SEGI_37107 Sequoiadendron giganteum HOM05D001448 ORTHO05D005781 3.7e-08 62.4 220 25.5
Lj2C1155G3 Lonicera japonica HOM05D001448 ORTHO05D005781 4.9e-08 62.0 193 25.9
Gohir.D11G134900 Gossypium hirsutum HOM05D001448 ORTHO05D005781 6.4e-08 61.6 221 25.3
Gohir.A11G129132 Gossypium hirsutum HOM05D001448 ORTHO05D005781 8.3e-08 61.2 221 25.3
Gorai.007G144300 Gossypium raimondii HOM05D001448 ORTHO05D005781 1.1e-07 60.8 221 25.3
CAN.G461.11 Capsicum annuum HOM05D001448 ORTHO05D005781 1.4e-07 60.5 221 25.3
ECA247G2778 Erigeron canadensis HOM05D001448 ORTHO05D005781 1.9e-07 60.1 220 25.9
Peaxi162Scf00134g00123 Petunia axillaris HOM05D001448 ORTHO05D005781 1.9e-07 60.1 221 25.3
Lsat_1_v5_gn_4_11880 Lactuca sativa HOM05D001448 ORTHO05D031440 2.4e-07 59.7 58 55.2
SMO118G0342 Selaginella moellendorffii HOM05D001448 ORTHO05D005781 2.4e-07 59.7 225 24.0
HanXRQChr10g0281131 Helianthus annuus HOM05D001448 ORTHO05D005781 3.2e-07 59.3 221 24.4
Nitab4.5_0000086g0180 Nicotiana tabacum HOM05D001448 ORTHO05D005781 4.1e-07 58.9 227 24.7
AUR62011902 Chenopodium quinoa HOM05D001448 ORTHO05D005781 5.4e-07 58.5 221 24.9
BcaB05g23624 Brassica carinata HOM05D001448 ORTHO05D007650 7.1e-07 58.2 62 53.2
Zm00001eb094840 Zea mays HOM05D001448 ORTHO05D005781 7.1e-07 58.2 221 24.9
Gohir.A04G021901 Gossypium hirsutum HOM05D001448 ORTHO05D005781 9.2e-07 57.8 221 24.4
Lsat_1_v5_gn_9_8981 Lactuca sativa HOM05D001448 ORTHO05D005781 9.2e-07 57.8 221 24.9
SGA_v2.0_scaffold138G35260 Striga asiatica HOM05D001448 ORTHO05D005781 1.2e-06 57.4 228 25.0
DCAR_018467 Daucus carota HOM05D001448 ORTHO05D005781 2.7e-06 56.2 214 26.2
SalBow4G1626 Salvia bowleyana HOM05D001448 ORTHO05D005781 2.7e-06 56.2 214 25.2
SalBow4G1745 Salvia bowleyana HOM05D001448 ORTHO05D005781 2.7e-06 56.2 214 25.2
Sopen03g036870 Solanum pennellii HOM05D001448 ORTHO05D005781 3.5e-06 55.8 221 24.4
PSO782G1748 Papaver somniferum HOM05D001448 ORTHO05D005781 6.0e-06 55.1 238 22.3
QL09p037774 Quercus lobata HOM05D001448 ORTHO05D005781 6.0e-06 55.1 221 25.3


User provided reference genes

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