Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.1e-128 461.1 232 100.0
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 5.3e-117 424.5 232 91.4
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 6.5e-107 391.0 254 82.3
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 3.2e-106 388.7 232 84.5
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 1.3e-102 376.7 226 83.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.1e-101 371.7 232 79.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 7.0e-101 370.9 232 78.9
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 9.1e-101 370.5 227 80.2
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.0e-99 367.1 232 80.2
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.3e-99 365.9 226 80.1
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.8e-99 365.2 228 82.0
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.1e-98 363.6 228 81.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.1e-98 363.6 220 83.2
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 1.5e-98 363.2 218 83.9
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.9e-98 362.8 222 80.6
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.5e-98 362.5 220 83.6
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.2e-98 362.1 222 80.2
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.5e-98 361.3 228 81.1
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 9.5e-98 360.5 222 79.3
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.6e-97 359.8 220 79.5
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.6e-97 359.8 218 81.2
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 2.8e-97 359.0 232 79.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 2.3e-96 355.9 222 79.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 6.8e-96 354.4 230 77.4
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.5e-95 353.2 230 74.3
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.4e-95 352.1 229 76.9
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 1.3e-94 350.1 227 75.3
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.7e-94 349.7 220 78.6
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 2.8e-94 349.0 219 78.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 4.9e-94 348.2 232 75.4
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 8.3e-94 347.4 227 74.9
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.1e-93 347.1 228 74.6
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.4e-93 346.7 232 75.0
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 2.4e-93 345.9 227 74.9
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 3.1e-93 345.5 229 73.8
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 4.1e-93 345.1 222 74.3
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 4.1e-93 345.1 220 79.1
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 7.0e-93 344.4 222 78.4
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 9.2e-93 344.0 232 72.0
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 9.2e-93 344.0 228 73.7
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 1.2e-92 343.6 220 74.5
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 2.0e-92 342.8 218 78.0
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.5e-92 342.0 232 72.8
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 1.3e-91 340.1 220 77.7
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.7e-91 339.7 226 72.6
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.7e-91 339.7 232 72.0
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.7e-91 339.7 221 75.6
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 2.3e-91 339.3 228 75.4
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 2.3e-91 339.3 220 73.6
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.9e-91 339.0 218 78.4
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 2.9e-91 339.0 220 73.6
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.9e-91 339.0 220 73.6
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.8e-91 338.6 232 71.6
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 3.8e-91 338.6 220 73.2
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 3.8e-91 338.6 232 71.6
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.8e-91 338.6 229 72.9
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.8e-91 338.6 231 74.0
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.8e-91 338.6 220 77.3
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 3.8e-91 338.6 220 77.3
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 5.0e-91 338.2 222 73.9
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 5.0e-91 338.2 232 71.6
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 6.6e-91 337.8 230 71.7
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 6.6e-91 337.8 230 72.6
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 6.6e-91 337.8 228 73.7
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 8.6e-91 337.4 230 73.9
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 8.6e-91 337.4 222 73.0
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 8.6e-91 337.4 232 72.0
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 1.1e-90 337.0 218 76.6
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.1e-90 337.0 230 72.6
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 1.5e-90 336.7 219 75.3
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.5e-90 336.7 220 73.2
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.5e-90 336.7 229 72.5
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.5e-90 336.7 219 74.9
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.9e-90 336.3 225 72.0
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.9e-90 336.3 218 75.7
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.5e-90 335.9 207 81.2
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.5e-90 335.9 219 74.9
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 4.3e-90 335.1 218 74.3
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 5.6e-90 334.7 218 75.7
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 7.3e-90 334.3 225 71.1
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 7.3e-90 334.3 225 71.6
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 9.5e-90 334.0 220 72.7
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.2e-89 333.6 219 74.4
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 2.1e-89 332.8 229 70.3
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-89 332.8 230 73.0
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 2.1e-89 332.8 230 73.0
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.8e-89 332.4 218 75.7
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.8e-89 332.4 218 75.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 3.6e-89 332.0 242 71.1
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.7e-89 331.6 218 75.7
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 6.1e-89 331.3 216 75.5
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.3e-88 329.3 228 75.4
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 6.8e-88 327.8 216 74.1
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 8.9e-88 327.4 224 70.5
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.9e-88 327.4 218 77.1
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-87 327.0 224 70.5
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.0e-87 326.2 226 70.4
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 2.0e-87 326.2 219 73.1
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 4.4e-87 325.1 224 70.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 7.5e-87 324.3 228 72.8
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.3e-86 323.6 223 71.3
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 3.2e-85 318.9 264 66.3
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 9.2e-85 317.4 205 72.7
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.7e-84 315.8 226 69.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 2.7e-84 315.8 218 70.6
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 5.9e-84 314.7 204 73.0
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 7.8e-84 314.3 218 69.7
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 7.8e-84 314.3 205 77.1
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 1.3e-83 313.5 204 73.5
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.3e-83 313.5 206 73.3
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.3e-83 313.5 224 72.8
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 8.6e-83 310.8 205 71.2
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 2.5e-82 309.3 207 71.0
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.3e-82 308.5 209 73.2
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 7.3e-82 307.8 212 70.3
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 7.3e-82 307.8 212 70.3
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.6e-81 306.6 202 72.3
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 4.7e-81 305.1 228 70.6
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 8.0e-81 304.3 204 73.5
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 6.8e-80 301.2 202 73.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 6.8e-80 301.2 205 72.2
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.9e-80 300.8 203 73.4
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 4.4e-79 298.5 205 71.2
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.5e-79 297.7 220 66.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 4.6e-76 288.5 203 68.0
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 6.0e-76 288.1 187 77.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 3.3e-74 282.3 214 63.1
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 9.5e-74 280.8 195 74.4
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-73 279.6 232 65.9
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 2.8e-73 279.3 221 61.5
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 6.2e-73 278.1 199 67.8
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 8.1e-73 277.7 217 65.0
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 8.1e-73 277.7 218 64.2
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.1e-72 275.8 212 67.0
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 2.6e-71 272.7 176 75.0
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 4.4e-71 271.9 223 65.9
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 4.9e-70 268.5 222 61.7
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 9.2e-69 264.2 215 65.1
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.1e-65 253.1 232 59.9
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 2.4e-64 249.6 161 77.0
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 8.9e-64 247.7 219 58.0
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.3e-62 243.8 210 60.5
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 4.9e-62 241.9 153 80.4
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.1e-61 240.7 160 73.1
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.3e-59 233.0 212 60.4
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 3.0e-59 232.6 212 55.7
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 3.9e-59 232.3 214 56.5
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.9e-58 229.9 215 56.7
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 9.6e-58 227.6 181 65.2
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 2.8e-57 226.1 212 54.7
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 4.7e-57 225.3 215 54.9
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-55 219.9 228 57.0
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.8e-55 218.4 221 57.0
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.4e-53 213.8 149 72.5
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.2e-53 212.2 213 52.6
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.2e-44 184.1 236 45.8
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.8e-40 170.2 237 43.0
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 3.1e-40 169.5 180 54.4
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 4.0e-40 169.1 110 77.3
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.2e-37 159.1 228 44.3
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.1e-36 156.8 112 67.0
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 1.0e-35 154.5 94 77.7
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.0e-35 154.5 220 41.4
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 9.6e-34 147.9 105 65.7
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.4e-32 143.3 124 65.3
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 3.8e-30 136.0 112 66.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 3.2e-29 132.9 78 82.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 3.9e-27 125.9 236 32.6
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.1e-20 103.6 68 69.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 5.7e-18 95.5 84 60.7
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.7e-15 85.1 74 60.8
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.4e-13 80.9 200 28.5
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.4e-10 69.3 106 40.6
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 9.1e-08 61.6 69 52.2
Cre03.g204751 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D043992 5.9e-07 58.9 91 38.5
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 7.7e-07 58.5 40 60.0
arahy.Tifrunner.gnm1.ann1.VLQ3S7 Arachis hypogaea HOM05D001805 ORTHO05D001734 6.5e-06 55.5 38 68.4


User provided reference genes

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