Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 4.8e-177 624.4 320 100.0
Sabra09G0104600 Salix brachista HOM05D015147 ORTHO05D003197 9.4e-80 301.2 253 65.2
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 4.6e-42 176.0 332 40.4
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 3.1e-38 163.3 327 38.5
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 6.6e-33 145.6 327 37.9
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 3.6e-31 139.8 307 34.5
CiPaw.06G122100 Carya illinoinensis HOM05D029580 ORTHO05D028671 1.2e-29 134.8 290 36.9
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.3e-28 131.3 329 34.0
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 7.8e-26 122.1 333 34.8
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.1e-23 114.0 326 32.2
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 4.7e-23 112.8 335 31.9
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 8.1e-23 112.1 336 31.8
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 3.1e-22 110.2 243 35.4
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.2e-22 109.4 338 28.4
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 8.4e-20 102.1 326 31.0
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 8.4e-20 102.1 380 28.9
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 4.1e-19 99.8 334 32.6
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 2.7e-18 97.1 334 31.4
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.3e-17 94.7 338 30.8
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 3.0e-17 93.6 332 28.9
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.9e-17 93.2 338 30.2
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 2.8e-15 87.0 334 30.5
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 3.6e-15 86.7 331 30.5
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 1.8e-14 84.3 366 28.1
Prupe.8G165300 Prunus persica HOM05D029580 ORTHO05D028671 2.4e-14 84.0 301 28.9
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 4.0e-14 83.2 350 29.7
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 5.2e-14 82.8 330 28.8
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 2.6e-13 80.5 325 29.2
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 2.6e-13 80.5 335 32.2
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 3.4e-13 80.1 365 29.3
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 7.6e-13 79.0 335 30.4
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 7.6e-13 79.0 330 27.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 9.9e-13 78.6 329 27.1
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.3e-12 78.2 336 29.8
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 3.8e-12 76.6 238 31.1
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 1.1e-11 75.1 333 29.7
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-11 75.1 330 27.9
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.1e-11 75.1 327 29.1
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 1.4e-11 74.7 329 29.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-11 74.7 331 27.8
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 2.4e-11 73.9 333 27.0
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 2.4e-11 73.9 332 29.5
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 3.2e-11 73.6 373 24.9
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.2e-11 73.6 329 27.7
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 5.4e-11 72.8 340 27.4
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.4e-11 72.8 344 26.7
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 7.1e-11 72.4 348 24.4
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 9.3e-11 72.0 336 27.1
COL.COLO4_17333 Corchorus olitorius HOM05D015147 ORTHO05D003197 1.6e-10 71.2 202 32.7
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 1.6e-10 71.2 351 25.4
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.7e-10 70.5 340 29.4
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 3.5e-10 70.1 327 25.1
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 4.6e-10 69.7 320 27.2
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.8e-10 68.9 327 26.9
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.7e-09 67.8 344 28.2
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.7e-09 67.8 351 26.8
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 5.1e-09 66.2 342 25.4
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 1.1e-08 65.1 342 27.5
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 1.5e-08 64.7 118 37.3
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 1.9e-08 64.3 329 30.7
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.9e-08 64.3 368 28.0
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.5e-08 63.9 239 28.0
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 2.5e-08 63.9 346 28.6
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.5e-08 63.9 236 28.8
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 3.3e-08 63.5 333 28.8
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 3.3e-08 63.5 425 23.3
A09p11580 Brassica napus HOM05D004095 ORTHO05D003197 4.3e-08 63.2 332 26.5
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 5.6e-08 62.8 329 29.5
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 5.6e-08 62.8 356 27.0
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 5.6e-08 62.8 391 24.6
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 7.3e-08 62.4 84 40.5
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 7.3e-08 62.4 255 25.5
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 7.3e-08 62.4 326 30.1
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 9.6e-08 62.0 334 31.1
FAN15G1030 Fragaria x ananassa HOM05D029580 ORTHO05D028671 9.6e-08 62.0 327 26.0
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 1.3e-07 61.6 329 28.9
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.3e-07 61.6 243 29.2
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.6e-07 61.2 364 25.8
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 2.1e-07 60.8 340 28.2
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.1e-07 60.8 326 24.2
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 2.1e-07 60.8 342 25.7
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 2.8e-07 60.5 329 29.8
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.8e-07 60.5 370 28.4
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 3.6e-07 60.1 382 27.0
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 4.8e-07 59.7 166 34.3
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 6.2e-07 59.3 336 26.5
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 8.1e-07 58.9 153 32.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 8.1e-07 58.9 381 24.7
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 1.1e-06 58.5 159 34.0
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.1e-06 58.5 333 26.7
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 1.8e-06 57.8 334 28.1
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.8e-06 57.8 336 27.1
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.4e-06 57.4 106 32.1
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.4e-06 57.4 326 26.1
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 3.1e-06 57.0 331 28.7
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 4.0e-06 56.6 100 33.0
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.0e-06 56.6 336 26.8
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 5.3e-06 56.2 336 25.6
Cpa.g.sc37.138 Carica papaya HOM05D015147 ORTHO05D003197 6.9e-06 55.8 131 33.6
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 6.9e-06 55.8 262 29.8
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 6.9e-06 55.8 341 27.6
Thecc.02G060400 Theobroma cacao HOM05D015147 ORTHO05D003197 6.9e-06 55.8 152 30.9
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 9.0e-06 55.5 333 28.5
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 9.0e-06 55.5 367 25.1
FvH4_2g01191 Fragaria vesca HOM05D029580 ORTHO05D028671 9.0e-06 55.5 32 65.6


User provided reference genes

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