Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.8e-301 1038.5 549 100.0
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 6.8e-272 940.3 549 89.6
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 2.1e-268 928.7 539 91.3
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 5.3e-256 887.5 526 88.6
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 2.5e-229 798.9 551 77.1
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 2.2e-225 785.8 542 76.2
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.3e-225 784.3 561 74.7
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 8.2e-225 783.9 549 75.6
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 6.9e-224 780.8 551 74.4
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 4.5e-223 778.1 549 75.4
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 6.5e-222 774.2 542 74.7
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.9e-221 772.7 551 74.0
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 3.0e-219 765.4 547 75.9
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 7.4e-218 760.8 551 73.5
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 2.8e-217 758.8 546 74.2
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 9.1e-216 753.8 573 71.9
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 3.8e-214 748.4 540 72.2
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 5.0e-214 748.0 545 71.9
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 5.5e-213 744.6 549 72.7
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.6e-212 743.0 552 73.0
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.6e-212 743.0 522 76.2
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.6e-212 743.0 551 72.4
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.4e-211 740.0 541 73.9
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 9.7e-210 733.8 548 73.5
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.1e-208 730.3 541 71.5
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 5.3e-208 728.0 555 72.3
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 9.1e-208 727.2 551 69.5
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 2.0e-207 726.1 547 69.7
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 2.6e-207 725.7 548 69.7
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 4.5e-207 724.9 543 70.7
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 4.5e-207 724.9 543 72.4
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 4.5e-207 724.9 543 72.4
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 2.9e-206 722.2 540 70.9
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 3.2e-205 718.8 557 71.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 4.2e-205 718.4 545 71.9
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 5.5e-205 718.0 547 69.7
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 5.5e-205 718.0 560 68.8
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 7.2e-205 717.6 566 68.9
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 9.4e-205 717.2 543 72.4
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 1.6e-204 716.5 539 69.8
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.6e-204 716.5 554 68.8
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.7e-204 715.7 543 72.2
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 4.7e-204 714.9 560 68.6
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.0e-203 713.8 551 68.8
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 3.0e-203 712.2 543 71.8
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.2e-202 710.3 548 70.1
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.2e-202 710.3 548 70.8
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 9.7e-202 707.2 559 67.4
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.3e-201 706.8 557 67.5
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.2e-201 706.1 551 70.4
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 8.2e-201 704.1 532 73.3
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.4e-200 703.4 541 69.3
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 2.4e-200 702.6 534 68.9
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 5.3e-200 701.4 534 68.7
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.7e-199 699.1 543 69.6
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 3.5e-199 698.7 534 68.7
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 5.9e-199 698.0 539 68.5
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.1e-197 693.7 537 67.4
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.5e-197 692.6 544 68.0
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 5.5e-197 691.4 544 67.6
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 7.2e-197 691.0 556 69.4
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 9.4e-197 690.6 538 68.8
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.2e-196 690.3 544 67.6
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.6e-196 689.9 547 67.6
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.6e-196 689.9 538 68.4
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 6.1e-196 688.0 540 67.6
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 4.4e-194 681.8 533 68.3
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 7.5e-194 681.0 544 66.4
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 2.2e-193 679.5 558 64.9
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 2.8e-193 679.1 553 67.6
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.4e-192 676.8 607 62.6
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 1.8e-192 676.4 551 66.1
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.0e-191 672.9 539 66.2
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 2.3e-190 669.5 581 63.9
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 2.9e-190 669.1 589 63.2
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.1e-189 667.2 537 66.3
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 2.5e-189 666.0 545 64.2
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 4.7e-188 661.8 536 68.1
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.4e-187 660.2 550 67.1
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 3.0e-187 659.1 571 64.6
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 2.6e-186 656.0 552 65.9
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 7.5e-186 654.4 545 64.2
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 7.5e-186 654.4 546 63.2
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.8e-184 649.8 552 65.2
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 3.1e-184 649.0 458 73.8
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 4.1e-184 648.7 554 65.7
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 3.5e-183 645.6 554 66.1
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 9.5e-181 637.5 551 64.8
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.2e-180 637.1 571 61.8
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 3.7e-177 625.5 562 61.6
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.6e-175 620.2 529 63.9
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.5e-173 613.6 531 63.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 6.8e-171 604.7 493 63.9
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.6e-164 583.6 595 56.8
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.1e-164 583.2 451 68.3
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.8e-155 553.5 392 75.8
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 5.2e-155 552.0 509 62.5
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 1.3e-150 537.3 538 58.9
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 8.1e-148 528.1 580 51.4
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 8.7e-142 508.1 498 60.0
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 6.2e-132 475.3 465 57.8
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 9.0e-131 471.5 472 54.2
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 3.5e-127 459.5 351 70.1
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.9e-125 453.8 353 69.7
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 3.2e-120 436.4 304 74.7
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 4.6e-119 432.6 304 74.3
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.1e-117 427.9 334 67.4
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 4.6e-111 406.0 521 44.7
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 6.3e-108 395.6 274 74.8
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.6e-106 390.2 297 68.7
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 2.2e-105 387.1 394 56.9
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 8.5e-105 385.2 297 66.7
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.9e-104 384.0 384 55.7
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 2.3e-102 377.1 336 61.9
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 2.0e-101 374.0 336 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 8.2e-92 342.0 575 38.3
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 8.2e-92 342.0 540 38.5
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.4e-83 314.7 508 38.0
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 7.0e-83 312.4 261 66.7
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 1.2e-79 301.6 280 60.4
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 2.9e-65 253.8 167 77.8
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 3.7e-52 210.3 262 51.9
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 9.2e-51 205.7 177 63.8
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.0e-50 203.0 562 29.4
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 3.1e-46 190.7 187 54.0
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 4.9e-36 156.8 423 27.2
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 1.6e-34 151.8 345 26.1
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.6e-34 151.8 114 67.5
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.3e-28 132.1 375 28.3
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.1e-24 119.0 92 65.2
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 7.3e-24 116.3 351 25.9
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 1.3e-23 115.5 457 24.9
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 3.1e-22 110.9 154 46.1
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.6e-21 107.8 76 68.4
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.2e-20 104.8 151 42.4
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 1.1e-19 102.4 75 68.0
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 1.2e-18 99.0 161 42.2
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 2.1e-18 98.2 448 24.3
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 2.3e-17 94.7 518 23.9
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.9e-11 75.1 393 23.9
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 6.0e-10 70.1 320 26.2
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 3.3e-08 64.3 214 27.6
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 4.8e-07 60.5 51 58.8
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 4.8e-07 60.5 44 68.2


User provided reference genes

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