Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 7.5e-124 447.2 226 100.0
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 4.0e-101 371.7 198 95.5
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 5.2e-101 371.3 198 93.9
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 2.7e-89 332.4 201 80.1
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 1.9e-87 326.2 201 82.6
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 9.6e-87 323.9 200 80.0
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 4.7e-86 321.6 198 79.3
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.1e-85 318.9 195 79.0
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 6.8e-85 317.8 201 81.6
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 8.9e-85 317.4 198 77.8
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.0e-84 316.2 201 81.1
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 4.4e-84 315.1 201 79.6
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 5.8e-84 314.7 201 78.6
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 1.3e-83 313.5 201 80.1
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 1.3e-83 313.5 199 78.9
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.2e-83 312.8 201 77.6
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 3.8e-83 312.0 200 76.0
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 4.9e-83 311.6 201 80.1
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 1.1e-82 310.5 181 84.0
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 1.9e-82 309.7 203 75.4
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 3.2e-82 308.9 198 78.3
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 5.4e-82 308.1 198 78.3
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 7.1e-82 307.8 200 75.0
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 7.1e-82 307.8 198 76.3
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 9.3e-82 307.4 200 78.5
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 9.3e-82 307.4 238 70.6
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.5e-81 305.4 201 77.1
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 3.5e-81 305.4 187 78.6
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.0e-81 304.7 195 75.4
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 7.8e-81 304.3 201 76.1
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.3e-80 303.5 201 76.6
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 1.3e-80 303.5 201 74.6
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.3e-80 303.5 198 75.3
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 1.3e-80 303.5 201 74.6
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.3e-80 302.8 201 76.6
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 3.0e-80 302.4 201 76.6
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 5.1e-80 301.6 201 76.6
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 6.6e-80 301.2 185 80.0
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 8.7e-80 300.8 202 74.8
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 8.7e-80 300.8 202 74.8
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.1e-79 300.4 200 74.5
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 2.5e-79 299.3 191 78.5
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 2.5e-79 299.3 200 75.0
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 3.3e-79 298.9 191 79.1
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 3.3e-79 298.9 180 81.7
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 3.3e-79 298.9 201 72.6
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 5.6e-79 298.1 201 72.6
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 5.6e-79 298.1 198 72.7
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 9.6e-79 297.4 184 76.6
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 2.8e-78 295.8 198 75.3
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 2.8e-78 295.8 208 74.0
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 4.8e-78 295.0 183 78.1
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 8.1e-78 294.3 201 72.1
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 1.1e-77 293.9 196 73.5
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.1e-77 293.9 179 78.8
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 1.8e-77 293.1 191 77.5
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 1.8e-77 293.1 197 74.1
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.8e-77 293.1 193 73.6
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 2.4e-77 292.7 193 77.2
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 6.9e-77 291.2 179 78.2
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 1.2e-76 290.4 182 75.8
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.5e-76 290.0 201 69.2
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.5e-76 290.0 178 78.1
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 2.6e-76 289.3 189 72.5
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 5.8e-76 288.1 201 69.2
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 5.8e-76 288.1 198 70.2
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 1.7e-75 286.6 220 67.3
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 1.7e-75 286.6 198 68.7
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 2.2e-75 286.2 190 74.2
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 3.8e-75 285.4 191 72.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.9e-75 285.0 217 68.7
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 8.4e-75 284.3 202 68.8
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.4e-74 283.5 201 68.7
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.9e-74 283.1 198 68.7
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.2e-74 282.3 203 73.9
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 5.4e-74 281.6 198 68.2
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 9.3e-74 280.8 181 74.0
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 1.2e-73 280.4 163 82.2
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 1.6e-73 280.0 194 71.6
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 2.1e-73 279.6 181 72.9
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 2.7e-73 279.3 193 72.0
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 3.5e-73 278.9 199 66.3
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 4.6e-73 278.5 201 66.7
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 7.9e-73 277.7 198 67.7
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 7.9e-73 277.7 169 81.1
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 1.3e-72 276.9 168 79.8
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 1.1e-71 273.9 196 67.9
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 1.5e-71 273.5 178 73.0
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 3.3e-71 272.3 212 63.7
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 7.3e-71 271.2 168 79.2
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-70 270.4 198 67.2
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 1.3e-70 270.4 211 64.0
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.6e-70 270.0 235 59.6
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 1.6e-70 270.0 198 67.2
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.1e-70 269.6 186 69.4
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.1e-70 269.6 268 56.3
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 2.8e-70 269.2 202 66.3
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 6.2e-70 268.1 169 76.3
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.8e-69 266.5 180 72.8
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 2.4e-69 266.2 179 70.4
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 3.1e-69 265.8 206 66.0
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 3.1e-69 265.8 282 52.5
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 6.9e-69 264.6 189 68.3
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 6.9e-69 264.6 201 64.2
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 9.0e-69 264.2 179 72.6
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 2.0e-68 263.1 187 67.9
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 7.6e-68 261.2 202 63.9
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 7.6e-68 261.2 210 67.1
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 9.9e-68 260.8 167 75.4
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 1.7e-67 260.0 201 64.7
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 1.7e-67 260.0 189 66.7
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 2.2e-67 259.6 201 63.7
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 1.4e-66 256.9 200 67.0
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 4.2e-66 255.4 182 65.4
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-65 253.8 180 67.2
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.6e-65 253.4 180 67.2
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 2.1e-65 253.1 147 82.3
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 3.5e-65 252.3 201 68.2
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 6.0e-65 251.5 147 81.6
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 6.0e-65 251.5 147 81.6
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 6.0e-65 251.5 180 68.9
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 1.3e-64 250.4 180 66.7
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 1.3e-64 250.4 161 77.6
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 1.8e-64 250.0 201 62.2
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 1.8e-64 250.0 182 64.8
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 2.3e-64 249.6 201 61.7
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 5.1e-64 248.4 189 62.4
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 1.5e-63 246.9 197 62.9
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 1.9e-63 246.5 147 82.3
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 2.1e-62 243.0 138 83.3
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 4.8e-62 241.9 198 66.7
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 7.6e-60 234.6 198 62.6
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 1.0e-59 234.2 196 64.3
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 3.8e-59 232.3 184 62.5
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 8.4e-59 231.1 201 58.2
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.4e-58 230.3 239 52.3
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.6e-54 216.9 178 60.1
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 2.8e-54 216.1 138 75.4
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.4e-53 213.0 178 59.0
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.1e-53 212.2 140 73.6
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 2.5e-50 203.0 173 56.6
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 1.6e-49 200.3 178 53.9
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 2.1e-49 199.9 190 56.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.7e-49 199.5 169 58.6
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 7.9e-49 198.0 118 83.9
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.3e-46 190.7 130 76.9
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.4e-45 186.4 104 84.6
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 2.9e-43 179.5 188 49.5
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 3.8e-35 152.5 168 45.2
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.2e-34 149.1 141 58.9
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 9.4e-34 147.9 178 44.4
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 4.7e-33 145.6 80 88.8
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.0e-32 142.9 120 62.5
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 5.9e-28 128.6 178 48.3
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 2.5e-26 123.2 82 73.2
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.0e-24 117.9 85 69.4
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 4.0e-24 115.9 180 41.1
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 2.8e-22 109.8 160 41.9
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 3.5e-20 102.8 67 70.1
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 3.2e-18 96.3 56 82.1
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 3.4e-15 86.3 65 69.2
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 5.9e-12 75.5 178 31.5
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 4.7e-09 65.9 39 79.5
Rhsim11G0185500 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.0e-08 64.7 61 45.9
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.5e-07 60.8 34 88.2
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 9.8e-07 58.2 40 72.5
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 8.3e-06 55.1 102 38.2


User provided reference genes

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