Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G126600 Populus trichocarpa HOM05D014780 ORTHO05D010368 7.5e-123 444.1 269 100.0
Sabra09G0097300 Salix brachista HOM05D000057 ORTHO05D010368 2.8e-93 345.9 267 71.2
Gohir.A01G009460 Gossypium hirsutum HOM05D014780 ORTHO05D010368 1.2e-19 101.3 278 29.1
Gorai.002G011100 Gossypium raimondii HOM05D014780 ORTHO05D010368 1.1e-17 94.7 278 27.3
Gohir.D01G009050 Gossypium hirsutum HOM05D014780 ORTHO05D010368 1.9e-17 94.0 278 28.1
Potri.001G326100 Populus trichocarpa HOM05D014780 ORTHO05D010368 2.5e-17 93.6 280 27.9
Ciclev10033911m.g Citrus clementina HOM05D014780 ORTHO05D010368 7.3e-17 92.0 295 28.1
Thecc.03G139400 Theobroma cacao HOM05D014780 ORTHO05D010368 1.6e-16 90.9 324 26.5
Prupe.8G245300 Prunus persica HOM05D019654 ORTHO05D010368 3.2e-12 76.6 76 47.4
Atru.chr5.1357 Acer truncatum HOM05D000520 ORTHO05D010368 7.0e-12 75.5 128 35.2
Potri.004G144200 Populus trichocarpa HOM05D010143 ORTHO05D010368 2.7e-11 73.6 86 38.4
Prupe.7G246000 Prunus persica HOM05D019654 ORTHO05D010368 3.5e-11 73.2 77 44.2
Gohir.A11G120300 Gossypium hirsutum HOM05D016083 ORTHO05D010368 7.8e-11 72.0 144 31.9
Duzib138G0353 Durio zibethinus HOM05D016083 ORTHO05D010368 1.0e-10 71.6 69 49.3
Gohir.D12G005750 Gossypium hirsutum HOM05D016083 ORTHO05D010368 1.0e-10 71.6 98 38.8
Gorai.008G005700 Gossypium raimondii HOM05D016083 ORTHO05D010368 1.0e-10 71.6 98 38.8
Gohir.A12G006300 Gossypium hirsutum HOM05D016083 ORTHO05D010368 1.7e-10 70.9 151 31.8
QL12p022735 Quercus lobata HOM05D010143 ORTHO05D010368 1.7e-10 70.9 92 39.1
Haze_05094 Corylus avellana HOM05D010143 ORTHO05D010368 2.3e-10 70.5 110 33.6
Gorai.007G134300 Gossypium raimondii HOM05D016083 ORTHO05D010368 2.3e-10 70.5 144 32.6
THA.LOC104823057 Tarenaya hassleriana HOM05D010143 ORTHO05D010368 2.3e-10 70.5 75 41.3
ClCG09G006850 Citrullus lanatus HOM05D029525 ORTHO05D010368 3.0e-10 70.1 85 42.4
Sabra04G0095800 Salix brachista HOM05D010143 ORTHO05D010368 3.0e-10 70.1 71 42.3
arahy.Tifrunner.gnm1.ann1.2MT6LL Arachis hypogaea HOM05D014780 ORTHO05D010368 3.9e-10 69.7 89 38.2
Lj4g0007031 Lotus japonicus HOM05D010143 ORTHO05D010368 3.9e-10 69.7 85 43.5
Sed0006744 Sechium edule HOM05D029525 ORTHO05D010368 3.9e-10 69.7 74 43.2
arahy.Tifrunner.gnm1.ann1.1699GZ Arachis hypogaea HOM05D000520 ORTHO05D010368 5.0e-10 69.3 89 38.2
Cfa004858 Carpinus fangiana HOM05D012249 ORTHO05D010368 2.5e-09 67.0 77 39.0
MD11G1290300 Malus domestica HOM05D019654 ORTHO05D010368 3.3e-09 66.6 71 43.7
CsaV3_7G028570 Cucumis sativus L. HOM05D029525 ORTHO05D010368 5.6e-09 65.9 70 44.3
AT3G04900 Arabidopsis thaliana HOM05D010143 ORTHO05D010368 7.3e-09 65.5 72 37.5
Solyc06g084340.1 Solanum lycopersicum HOM05D015379 ORTHO05D017769 7.3e-09 65.5 92 31.5
TPR.G39231 Trifolium pratense HOM05D010143 ORTHO05D010368 9.5e-09 65.1 90 40.0
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 1.2e-08 64.7 121 33.1
Actinidia21095 Actinidia chinensis HOM05D030391 ORTHO05D010368 2.1e-08 63.9 89 41.6
AL7G29470 Arabidopsis lyrata HOM05D010390 ORTHO05D012282 3.6e-08 63.2 64 43.8
Thhalv10001101m.g Eutrema salsugineum HOM05D010143 ORTHO05D010368 3.6e-08 63.2 75 36.0
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 3.6e-08 63.2 77 39.0
Actinidia23612 Actinidia chinensis HOM05D000520 ORTHO05D000399 4.7e-08 62.8 91 39.6
AL3G15190 Arabidopsis lyrata HOM05D010143 ORTHO05D010368 4.7e-08 62.8 66 39.4
SalBow3G2935 Salvia bowleyana HOM05D012249 ORTHO05D014194 6.2e-08 62.4 68 41.2
C01p10000 Brassica napus HOM05D010143 ORTHO05D010368 8.1e-08 62.0 103 32.0
CSS0027010 Camellia sinensis var. sinensis HOM05D030391 ORTHO05D010368 8.1e-08 62.0 90 36.7
CARHR079170 Cardamine hirsuta HOM05D010143 ORTHO05D010368 8.1e-08 62.0 75 33.3
Medtr2g018790 Medicago truncatula HOM05D000520 ORTHO05D010368 8.1e-08 62.0 84 36.9
A01p08560 Brassica napus HOM05D010143 ORTHO05D010368 1.1e-07 61.6 75 36.0
BraA01t00806Z Brassica rapa HOM05D010143 ORTHO05D010368 1.1e-07 61.6 75 36.0
Carub.0007s1724 Capsella rubella HOM05D010390 ORTHO05D012282 1.4e-07 61.2 67 37.3
SGA_v2.0_scaffold71G23917 Striga asiatica HOM05D012249 ORTHO05D014194 1.8e-07 60.8 72 41.7
AT4G23882 Arabidopsis thaliana HOM05D010390 ORTHO05D012282 2.3e-07 60.5 64 40.6
CANSAT54G1951 Cannabis sativa HOM05D000520 ORTHO05D000399 3.1e-07 60.1 78 42.3
SalBow5G4205 Salvia bowleyana HOM05D012249 ORTHO05D014194 3.1e-07 60.1 91 37.4
SalBow5G4839 Salvia bowleyana HOM05D012249 ORTHO05D014194 3.1e-07 60.1 91 37.4
BcaC09g51735 Brassica carinata HOM05D010143 ORTHO05D010368 4.0e-07 59.7 74 35.1
Ca_21110_v3 Cicer arietinum L. HOM05D010143 ORTHO05D010368 4.0e-07 59.7 83 39.8
THA.LOC104805601 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 4.0e-07 59.7 132 27.3
Cc04_g13830 Coffea canephora HOM05D010143 ORTHO05D010368 5.2e-07 59.3 76 35.5
Carub.0001s2868 Capsella rubella HOM05D010390 ORTHO05D012282 6.8e-07 58.9 95 33.7
CAN.G449.34 Capsicum annuum HOM05D000520 ORTHO05D012023 6.8e-07 58.9 68 42.6
Potri.004G091700 Populus trichocarpa HOM05D000520 ORTHO05D006660 6.8e-07 58.9 104 34.6
Atru.chr5.1356 Acer truncatum HOM05D010143 ORTHO05D010368 8.9e-07 58.5 89 34.8
Dinv23967 Davidia involucrata HOM05D001853 ORTHO05D000399 8.9e-07 58.5 71 42.3
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 8.9e-07 58.5 74 41.9
Manes.03G184400 Manihot esculenta HOM05D000520 ORTHO05D000399 1.2e-06 58.2 69 44.9
Medtr1g082650 Medicago truncatula HOM05D000520 ORTHO05D000399 1.2e-06 58.2 69 46.4
Nn4g26198 Nelumbo nucifera HOM05D000520 ORTHO05D000399 1.2e-06 58.2 121 30.6
Psat4g008840 Pisum sativum HOM05D010143 ORTHO05D010368 1.2e-06 58.2 74 40.5
Potri.005G036300 Populus trichocarpa HOM05D000520 ORTHO05D000399 1.2e-06 58.2 74 40.5
SalBow8G2105 Salvia bowleyana HOM05D000520 ORTHO05D000399 1.2e-06 58.2 126 29.4
Thecc.04G222100 Theobroma cacao HOM05D000520 ORTHO05D000399 1.2e-06 58.2 73 43.8
Nitab4.5_0001643g0070 Nicotiana tabacum HOM05D000520 ORTHO05D000399 1.5e-06 57.8 98 35.7
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 1.5e-06 57.8 69 44.9
Cpa.g.sc48.23 Carica papaya HOM05D000520 ORTHO05D000399 2.0e-06 57.4 73 42.5
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 2.0e-06 57.4 73 42.5
Thhalv10028162m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 2.0e-06 57.4 105 32.4
Hma1.2p1_0832F.1_g225690 Hydrangea macrophylla HOM05D000520 ORTHO05D006660 2.0e-06 57.4 91 35.2
Aqoxy5G00529 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 2.6e-06 57.0 86 37.2
Cpa.g.sc16.22 Carica papaya HOM05D000520 ORTHO05D000399 2.6e-06 57.0 99 36.4
Glyma.10G156100 Glycine max HOM05D000520 ORTHO05D000399 2.6e-06 57.0 76 42.1
Solyc01g098760.4 Solanum lycopersicum HOM05D000520 ORTHO05D000399 2.6e-06 57.0 86 37.2
Sopen01g042290 Solanum pennellii HOM05D000520 ORTHO05D000399 2.6e-06 57.0 86 37.2
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.6e-06 57.0 69 43.5
unitig_62.g23731 Utricularia gibba HOM05D000520 ORTHO05D006660 2.6e-06 57.0 71 42.3
arahy.Tifrunner.gnm1.ann1.4A91W2 Arachis hypogaea HOM05D000520 ORTHO05D000399 3.4e-06 56.6 66 43.9
arahy.Tifrunner.gnm1.ann1.BTHT4S Arachis hypogaea HOM05D000520 ORTHO05D000399 3.4e-06 56.6 66 43.9
Haze_04751 Corylus avellana HOM05D027832 ORTHO05D010368 3.4e-06 56.6 85 41.2
Glyma.19G236700 Glycine max HOM05D000520 ORTHO05D000399 3.4e-06 56.6 131 32.1
Peaxi162Scf00037g00123 Petunia axillaris HOM05D000520 ORTHO05D000399 3.4e-06 56.6 69 40.6
PGR119G1315 Punica granatum HOM05D000262 ORTHO05D000300 3.4e-06 56.6 125 29.6
Sabra08G0158700 Salix brachista HOM05D000520 ORTHO05D000399 3.4e-06 56.6 69 43.5
TPR.G22796 Trifolium pratense HOM05D000520 ORTHO05D000399 3.4e-06 56.6 70 45.7
AL3G16980 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 4.4e-06 56.2 73 42.5
AT3G06130 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 4.4e-06 56.2 73 42.5
A05p41870 Brassica napus HOM05D000520 ORTHO05D000399 4.4e-06 56.2 73 42.5
Ciclev10013773m.g Citrus clementina HOM05D000520 ORTHO05D006660 4.4e-06 56.2 63 46.0
COL.COLO4_13507 Corchorus olitorius HOM05D000416 ORTHO05D000322 4.4e-06 56.2 96 34.4
Dinv40265 Davidia involucrata HOM05D000520 ORTHO05D000399 4.4e-06 56.2 71 40.8
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 4.4e-06 56.2 66 43.9
Manes.15G023400 Manihot esculenta HOM05D000520 ORTHO05D000399 4.4e-06 56.2 69 43.5
THA.LOC104818680 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 4.4e-06 56.2 89 38.2
TAR636G3323 Trochodendron aralioides HOM05D000520 ORTHO05D000399 4.4e-06 56.2 69 42.0
BcaC05g30053 Brassica carinata HOM05D000520 ORTHO05D000399 5.8e-06 55.8 73 42.5
BraA05t22906Z Brassica rapa HOM05D000520 ORTHO05D000399 5.8e-06 55.8 73 42.5
Carub.0003s0410 Capsella rubella HOM05D010143 ORTHO05D010368 5.8e-06 55.8 98 27.6
Carub.0003s0556 Capsella rubella HOM05D000520 ORTHO05D000399 5.8e-06 55.8 73 42.5
CAN.G1132.7 Capsicum annuum HOM05D000520 ORTHO05D000399 5.8e-06 55.8 86 36.0
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 5.8e-06 55.8 73 41.1
Haze_04748 Corylus avellana HOM05D027832 ORTHO05D010368 5.8e-06 55.8 68 45.6
Thhalv10020810m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 5.8e-06 55.8 73 42.5
Lj1g0011037 Lotus japonicus HOM05D000520 ORTHO05D000399 5.8e-06 55.8 87 35.6
Potri.008G202800 Populus trichocarpa HOM05D000520 ORTHO05D000399 5.8e-06 55.8 69 43.5
Sc04g0005670 Simmondsia chinensis HOM05D000520 ORTHO05D006660 5.8e-06 55.8 56 44.6
MSTRG.20431 Avicennia marina HOM05D000520 ORTHO05D000399 7.5e-06 55.5 72 36.1
BcaB06g27152 Brassica carinata HOM05D000520 ORTHO05D000399 7.5e-06 55.5 123 28.5
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 7.5e-06 55.5 73 42.5
Glyma.20G232200 Glycine max HOM05D000520 ORTHO05D000399 7.5e-06 55.5 69 44.9
Nitab4.5_0002031g0100 Nicotiana tabacum HOM05D000520 ORTHO05D000399 7.5e-06 55.5 84 36.9
Psat0s1377g0160 Pisum sativum HOM05D000520 ORTHO05D000399 7.5e-06 55.5 66 45.5
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 7.5e-06 55.5 71 39.4
RcHm_v2.0_Chr4g0418311 Rosa chinensis HOM05D000520 ORTHO05D000399 7.5e-06 55.5 67 44.8
Sp3g05080 Schrenkiella parvula HOM05D000520 ORTHO05D000399 7.5e-06 55.5 89 38.2
Aa31LG1G15860 Aethionema arabicum HOM05D010390 ORTHO05D012282 9.9e-06 55.1 103 31.1
BraA03t12630Z Brassica rapa HOM05D000520 ORTHO05D000399 9.9e-06 55.1 90 40.0
CARHR023380 Cardamine hirsuta HOM05D000520 ORTHO05D006660 9.9e-06 55.1 97 37.1
Ca_10099_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 9.9e-06 55.1 69 44.9
Migut.L00471 Erythranthe guttata HOM05D000520 ORTHO05D000399 9.9e-06 55.1 65 40.0
Lj9A142G3 Lonicera japonica HOM05D000520 ORTHO05D000399 9.9e-06 55.1 96 34.4
Lj5g0006582 Lotus japonicus HOM05D000520 ORTHO05D000399 9.9e-06 55.1 93 39.8
Peaxi162Scf00783g00342 Petunia axillaris HOM05D015379 ORTHO05D017769 9.9e-06 55.1 73 31.5
PGR119G1558 Punica granatum HOM05D000262 ORTHO05D000300 9.9e-06 55.1 125 28.8
Sp1g26300 Schrenkiella parvula HOM05D010390 ORTHO05D012282 9.9e-06 55.1 63 39.7
Sopen05g032740 Solanum pennellii HOM05D011626 ORTHO05D012023 9.9e-06 55.1 73 41.1
TPR.G20123 Trifolium pratense HOM05D000520 ORTHO05D000399 9.9e-06 55.1 69 42.0


User provided reference genes

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