Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 3.9e-21 104.0 56 100.0
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 1.2e-19 99.0 56 94.6
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 8.0e-19 96.3 56 96.4
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.5e-17 92.0 56 91.1
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 3.4e-17 90.9 56 89.3
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 4.4e-17 90.5 56 87.5
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 5.8e-17 90.1 51 92.2
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 7.5e-17 89.7 56 87.5
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 9.8e-17 89.4 56 87.5
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.3e-16 89.0 56 87.5
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.3e-16 89.0 51 90.2
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 1.3e-16 89.0 56 87.5
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.3e-16 89.0 56 87.5
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 2.2e-16 88.2 56 87.5
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.9e-16 87.8 56 87.5
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 2.9e-16 87.8 56 87.5
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 3.7e-16 87.4 56 85.7
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 4.9e-16 87.0 56 85.7
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 6.4e-16 86.7 56 87.5
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 6.4e-16 86.7 56 87.5
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 6.4e-16 86.7 56 83.9
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 6.4e-16 86.7 56 85.7
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 6.4e-16 86.7 56 87.5
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 6.4e-16 86.7 56 85.7
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 8.3e-16 86.3 56 83.9
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 8.3e-16 86.3 56 85.7
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 8.3e-16 86.3 56 82.1
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 8.3e-16 86.3 56 83.9
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 8.3e-16 86.3 56 85.7
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 1.1e-15 85.9 56 83.9
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.1e-15 85.9 56 82.1
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.1e-15 85.9 56 83.9
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 1.1e-15 85.9 56 83.9
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.4e-15 85.5 56 83.9
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 1.4e-15 85.5 56 83.9
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 1.9e-15 85.1 56 85.7
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 1.9e-15 85.1 56 80.4
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 2.4e-15 84.7 51 86.3
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 2.4e-15 84.7 56 82.1
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 2.4e-15 84.7 51 84.3
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.4e-15 84.7 56 85.7
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 3.2e-15 84.3 56 83.9
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 4.1e-15 84.0 56 82.1
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 4.1e-15 84.0 56 82.1
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 7.0e-15 83.2 56 80.4
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 9.2e-15 82.8 56 82.1
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 9.2e-15 82.8 56 83.9
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.2e-14 82.4 56 80.4
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.2e-14 82.4 52 84.6
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 1.6e-14 82.0 56 82.1
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 1.6e-14 82.0 56 82.1
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.6e-14 82.0 56 82.1
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 2.0e-14 81.6 56 82.1
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 2.0e-14 81.6 56 80.4
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 2.7e-14 81.3 56 82.1
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 4.6e-14 80.5 56 78.6
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 4.6e-14 80.5 56 80.4
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 4.6e-14 80.5 56 80.4
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 6.0e-14 80.1 56 80.4
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 7.8e-14 79.7 56 78.6
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.3e-13 79.0 56 80.4
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 2.3e-13 78.2 48 83.3
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.0e-13 77.8 56 78.6
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 3.9e-13 77.4 56 78.6
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 5.0e-13 77.0 56 75.0
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 5.0e-13 77.0 58 77.6
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 6.6e-13 76.6 56 78.6
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 6.6e-13 76.6 56 78.6
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 8.6e-13 76.3 56 76.8
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 8.6e-13 76.3 56 76.8
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.1e-12 75.9 56 78.6
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.5e-12 74.7 53 73.6
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 3.3e-12 74.3 42 90.5
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 4.3e-12 73.9 56 76.8
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 4.3e-12 73.9 56 76.8
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 5.6e-12 73.6 56 75.0
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.6e-12 73.6 56 76.8
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 9.5e-12 72.8 58 74.1
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 9.5e-12 72.8 39 92.3
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 1.2e-11 72.4 56 75.0
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-11 72.4 56 75.0
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-11 72.4 56 75.0
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-11 72.4 56 75.0
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 1.2e-11 72.4 56 75.0
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.2e-11 72.4 56 75.0
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 1.2e-11 72.4 69 65.2
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 2.1e-11 71.6 55 72.7
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 2.1e-11 71.6 42 88.1
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 2.8e-11 71.2 51 76.5
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.8e-11 71.2 38 92.1
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 2.8e-11 71.2 42 88.1
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 3.6e-11 70.9 56 73.2
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 3.6e-11 70.9 56 73.2
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 3.6e-11 70.9 38 92.1
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 3.6e-11 70.9 52 75.0
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 6.2e-11 70.1 56 73.2
Glyma.09G222500 Glycine max HOM05D004818 ORTHO05D005444 6.2e-11 70.1 80 56.2
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 8.0e-11 69.7 38 89.5
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.1e-10 69.3 40 85.0
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.4e-10 68.9 43 83.7
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.4e-10 68.9 56 71.4
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 1.4e-10 68.9 38 92.1
SMO358G0321 Selaginella moellendorffii HOM05D004818 ORTHO05D005444 1.8e-10 68.6 48 72.9
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 1.8e-10 68.6 52 76.9
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.3e-10 68.2 56 69.6
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 3.1e-10 67.8 56 69.6
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 3.1e-10 67.8 56 66.1
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 3.1e-10 67.8 52 75.0
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 4.0e-10 67.4 56 71.4
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 5.2e-10 67.0 48 77.1
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 5.2e-10 67.0 56 73.2
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 6.8e-10 66.6 53 75.5
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 6.8e-10 66.6 38 86.8
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 8.9e-10 66.2 56 69.6
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 8.9e-10 66.2 56 69.6
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 8.9e-10 66.2 38 86.8
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.5e-09 65.5 56 67.9
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.5e-09 65.5 56 69.6
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 3.4e-09 64.3 35 88.6
Hma1.2p1_0066F.1_g035670 Hydrangea macrophylla HOM05D004818 ORTHO05D005444 3.4e-09 64.3 51 66.7
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 4.4e-09 63.9 43 76.7
Ah.01g018640 Amaranthus hybridus HOM05D004284 ORTHO05D006610 9.8e-09 62.8 59 69.5
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 9.8e-09 62.8 41 75.6
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.3e-08 62.4 56 66.1
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 3.7e-08 60.8 38 78.9
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 3.7e-08 60.8 42 73.8
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 3.7e-08 60.8 46 71.7
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 3.7e-08 60.8 39 74.4
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 4.9e-08 60.5 38 78.9
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 8.3e-08 59.7 56 64.3
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 8.3e-08 59.7 56 64.3
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 8.3e-08 59.7 56 64.3
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 8.3e-08 59.7 56 64.3
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 8.3e-08 59.7 35 85.7
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.1e-07 59.3 38 73.7
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 1.4e-07 58.9 56 62.5
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 1.4e-07 58.9 77 51.9
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 2.4e-07 58.2 38 76.3
CDE05G2892 Ceratophyllum demersum HOM05D000830 ORTHO05D002187 3.2e-07 57.8 44 65.9
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 4.1e-07 57.4 56 57.1
Hund00173 Selenicereus undatus HOM05D004818 ORTHO05D005444 4.1e-07 57.4 72 55.6
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 7.0e-07 56.6 56 60.7
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 7.0e-07 56.6 56 60.7
Pp3c1_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 9.2e-07 56.2 41 70.7
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.2e-06 55.8 44 68.2
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 1.2e-06 55.8 49 67.3
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 1.2e-06 55.8 49 67.3
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-06 55.8 49 67.3
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 1.2e-06 55.8 49 67.3
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 1.2e-06 55.8 52 61.5
Pp3c2_20190 Physcomitrium patens HOM05D004818 ORTHO05D005444 1.6e-06 55.5 41 68.3
Mapoly0066s0039 Marchantia polymorpha HOM05D004818 ORTHO05D005444 2.1e-06 55.1 45 62.2
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 4.6e-06 53.9 40 77.5
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 7.8e-06 53.1 38 73.7
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 7.8e-06 53.1 52 63.5


User provided reference genes

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