Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 2.9e-199 698.4 351 100.0
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 1.6e-189 666.0 363 93.4
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 2.2e-167 592.4 345 86.4
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 8.5e-167 590.5 349 84.0
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 8.0e-165 583.9 342 85.1
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 5.2e-164 581.3 341 83.9
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 7.0e-161 570.9 343 82.5
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 2.6e-160 568.9 347 81.6
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.0e-159 567.0 347 81.6
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 3.8e-159 565.1 344 81.7
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 5.5e-158 561.2 344 80.8
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 7.2e-158 560.8 343 81.0
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 1.2e-157 560.1 344 81.1
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 1.2e-157 560.1 344 81.1
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 2.1e-157 559.3 385 74.5
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 3.6e-157 558.5 344 80.5
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 6.1e-157 557.8 348 79.6
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 8.0e-157 557.4 359 76.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 2.3e-156 555.8 345 80.3
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.3e-156 555.8 352 78.4
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 6.7e-156 554.3 345 80.0
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.5e-155 553.1 348 79.9
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 1.5e-155 553.1 343 79.9
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.6e-155 552.4 303 89.1
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 4.4e-155 551.6 345 78.8
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 5.7e-155 551.2 305 86.9
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 5.7e-155 551.2 369 76.2
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 9.7e-155 550.4 359 78.3
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.7e-154 549.7 302 87.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 8.3e-154 547.4 345 78.8
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 4.1e-153 545.0 302 86.1
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 2.0e-152 542.7 344 77.6
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 2.0e-152 542.7 338 79.3
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 4.5e-152 541.6 351 77.5
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 5.9e-152 541.2 346 77.2
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 5.9e-152 541.2 346 76.3
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 3.8e-151 538.5 342 76.6
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.8e-151 538.5 359 75.5
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 3.8e-151 538.5 359 75.5
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 5.0e-151 538.1 347 76.4
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 8.5e-151 537.3 346 76.0
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 8.5e-151 537.3 345 77.7
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.1e-150 537.0 349 75.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 1.1e-150 537.0 355 75.2
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.1e-150 537.0 355 74.9
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.5e-150 536.6 348 78.4
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 1.9e-150 536.2 354 75.1
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 1.9e-150 536.2 307 83.4
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 5.5e-150 534.6 302 85.4
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 9.4e-150 533.9 355 74.9
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 1.2e-149 533.5 333 78.4
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 3.6e-149 531.9 349 74.5
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 3.6e-149 531.9 349 74.5
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 3.6e-149 531.9 345 75.1
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 8.0e-149 530.8 391 72.1
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 8.0e-149 530.8 346 76.6
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 1.4e-148 530.0 353 74.5
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 8.8e-148 527.3 345 75.1
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 2.6e-147 525.8 341 74.8
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 3.4e-147 525.4 345 75.7
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 3.4e-147 525.4 343 74.6
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 4.4e-147 525.0 304 82.6
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 5.7e-147 524.6 309 81.6
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 2.2e-146 522.7 345 74.2
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 4.8e-146 521.5 345 74.8
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 1.4e-145 520.0 355 73.2
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 1.4e-145 520.0 314 82.5
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 1.8e-145 519.6 345 73.6
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 3.1e-145 518.8 303 81.8
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 9.1e-145 517.3 303 82.8
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 1.0e-143 513.8 325 76.6
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 6.6e-143 511.1 311 78.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 3.3e-142 508.8 353 72.0
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 1.3e-138 496.9 324 75.0
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 3.7e-138 495.4 302 77.8
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.2e-137 492.3 325 75.1
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 9.2e-137 490.7 387 65.9
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 1.0e-135 487.3 313 78.3
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 2.3e-135 486.1 378 66.9
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 6.8e-132 474.6 342 70.8
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 2.6e-131 472.6 281 79.7
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 2.2e-130 469.5 301 74.1
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.0e-127 460.7 346 67.3
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.3e-126 455.3 293 76.5
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.7e-125 451.8 307 72.6
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 1.1e-124 450.7 354 67.5
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.1e-121 438.0 303 67.0
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.1e-121 438.0 303 67.0
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 1.0e-119 434.1 351 60.4
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 1.3e-119 433.7 302 67.5
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 8.6e-119 431.0 294 70.7
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 4.0e-116 422.2 353 63.2
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 9.6e-110 401.0 275 72.7
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 2.9e-106 389.4 280 67.9
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 5.1e-103 378.6 247 78.1
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 1.7e-98 363.6 312 54.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 1.2e-91 340.9 306 52.3
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 2.3e-87 326.6 345 52.8
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 6.7e-87 325.1 236 72.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 1.5e-86 323.9 184 83.7
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 5.8e-83 312.0 226 69.9
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-81 307.4 304 56.2
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.9e-81 307.0 310 50.0
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 3.7e-77 292.7 241 58.1
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 7.9e-72 275.0 205 68.3
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 7.9e-72 275.0 240 62.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.3e-60 235.7 124 86.3
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 5.3e-60 235.7 124 86.3
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 6.7e-55 218.8 122 79.5
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 2.0e-54 217.2 122 78.7
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 3.5e-51 206.5 182 62.1
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 5.0e-50 202.6 137 73.7
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 8.5e-42 175.3 103 75.7
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 2.0e-38 164.1 304 31.6
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 2.4e-36 157.1 297 36.7
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 7.7e-35 152.1 144 58.3
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 2.2e-34 150.6 125 62.4
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.9e-33 147.5 102 71.6
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 3.0e-31 140.2 80 82.5
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 2.2e-29 134.0 117 60.7
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 4.1e-28 129.8 181 42.0
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 1.0e-26 125.2 102 64.7
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 2.8e-24 117.1 114 55.3
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 8.0e-24 115.5 71 70.4
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 5.2e-23 112.8 131 50.4
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 1.1e-20 105.1 181 40.3
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.4e-20 104.8 121 52.1
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.4e-12 78.2 64 62.5
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 2.4e-12 77.4 46 76.1
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 1.7e-10 71.2 59 64.4
COL.COLO4_26276 Corchorus olitorius HOM05D000089 ORTHO05D000726 5.6e-09 66.2 323 25.7
Duzib093G1615 Durio zibethinus HOM05D000089 ORTHO05D000726 9.5e-09 65.5 323 26.3
AT4G33360 Arabidopsis thaliana HOM05D001625 ORTHO05D008114 6.8e-07 59.3 223 24.7
BraA03t15233Z Brassica rapa HOM05D001625 ORTHO05D008114 6.8e-07 59.3 238 26.9
Carub.0007s0712 Capsella rubella HOM05D001625 ORTHO05D008114 6.8e-07 59.3 219 24.7
AL7G18200 Arabidopsis lyrata HOM05D001625 ORTHO05D008114 1.5e-06 58.2 226 24.8
A03p61940 Brassica napus HOM05D001625 ORTHO05D008114 2.0e-06 57.8 230 27.0
Thecc.08G030500 Theobroma cacao HOM05D000089 ORTHO05D000726 2.0e-06 57.8 327 24.2
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 4.4e-06 56.6 230 26.1


User provided reference genes

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