Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.3e-63 246.1 117 100.0
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 8.8e-60 233.4 116 94.0
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 1.9e-54 215.7 114 86.8
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 1.9e-54 215.7 114 86.8
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 7.2e-54 213.8 114 86.0
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.2e-53 213.0 118 84.7
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.2e-53 213.0 118 86.4
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.6e-53 212.6 117 83.8
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.1e-53 212.2 117 81.2
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.1e-53 212.2 117 83.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.7e-53 211.8 118 86.4
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 4.7e-53 211.1 118 83.9
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 6.1e-53 210.7 114 84.2
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 6.1e-53 210.7 114 85.1
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.0e-52 208.4 115 83.5
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.2e-52 207.6 115 86.1
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.7e-52 207.2 115 86.1
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 8.8e-52 206.8 115 81.7
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 8.8e-52 206.8 112 86.6
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 8.8e-52 206.8 114 84.2
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.2e-51 206.5 111 86.5
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 81.0
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.2e-51 206.5 113 85.0
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.5e-51 206.1 113 83.2
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 1.5e-51 206.1 114 84.2
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 112 84.8
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 1.5e-51 206.1 116 82.8
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.5e-51 206.1 115 86.1
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.0e-51 205.7 114 85.1
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.0e-51 205.7 114 83.3
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 2.0e-51 205.7 117 81.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 2.6e-51 205.3 113 83.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.6e-51 205.3 113 83.2
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.3e-51 204.9 112 83.9
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.4e-51 204.5 114 84.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 5.7e-51 204.1 113 83.2
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 7.5e-51 203.8 114 83.3
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 7.5e-51 203.8 112 84.8
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 9.7e-51 203.4 113 82.3
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.3e-50 203.0 117 81.2
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.3e-50 203.0 113 82.3
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 114 83.3
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.7e-50 202.6 117 81.2
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.2e-50 202.2 117 80.3
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 83.9
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 83.9
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 2.2e-50 202.2 117 81.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 83.0
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.8e-50 201.8 114 81.6
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 3.7e-50 201.4 114 79.8
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.8e-50 201.1 111 84.7
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 4.8e-50 201.1 110 86.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 4.8e-50 201.1 117 79.5
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 6.3e-50 200.7 114 83.3
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 6.3e-50 200.7 110 85.5
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 8.2e-50 200.3 117 83.8
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 8.2e-50 200.3 112 81.2
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 1.1e-49 199.9 116 79.3
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.4e-49 199.5 112 82.1
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.4e-49 199.5 137 73.0
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 1.8e-49 199.1 113 82.3
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.8e-49 199.1 111 82.0
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 2.4e-49 198.7 113 80.5
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.1e-49 198.0 112 80.4
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 81.4
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 7.0e-49 197.2 116 79.3
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 9.1e-49 196.8 112 79.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.6e-48 196.1 114 80.7
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 79.6
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 114 78.1
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 114 78.1
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 3.5e-48 194.9 112 77.7
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 3.5e-48 194.9 114 79.8
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 78.8
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 7.7e-48 193.7 117 77.8
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.0e-47 193.4 114 79.8
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 1.7e-47 192.6 113 77.0
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-47 192.2 114 77.2
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.9
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.9
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.9
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.9
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.8e-47 191.4 113 77.9
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.8e-47 191.4 114 73.7
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 6.5e-47 190.7 113 77.9
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 6.5e-47 190.7 113 77.9
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 8.5e-47 190.3 113 77.9
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-46 189.9 113 77.0
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.1e-46 189.9 113 77.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 76.1
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 76.1
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 76.1
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 76.1
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 76.1
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 1.9e-46 189.1 113 77.0
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 4.2e-46 188.0 110 76.4
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-45 186.4 113 76.1
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 1.2e-45 186.4 112 75.9
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 1.6e-45 186.0 112 75.0
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.1e-45 185.7 101 85.1
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.7e-45 185.3 113 77.0
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 2.7e-45 185.3 99 86.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 6.1e-45 184.1 113 75.2
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 6.1e-45 184.1 99 85.9
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.0e-44 183.3 115 74.8
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.0e-44 181.8 110 78.2
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.2e-43 179.9 178 53.9
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 9.8e-43 176.8 116 70.7
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.7e-42 176.0 116 66.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.2e-42 175.6 105 76.2
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 116 69.8
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 6.3e-42 174.1 108 72.2
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 1.4e-41 172.9 103 76.7
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.8e-41 172.6 99 78.8
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 2.4e-41 172.2 148 58.8
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 7.0e-41 170.6 123 69.1
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.6e-40 169.5 107 72.0
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.7e-40 168.7 104 76.0
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 4.5e-40 167.9 101 74.3
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 4.0e-36 154.8 112 67.9
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 9.8e-35 150.2 88 80.7
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.7e-34 149.4 114 61.4
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.8e-33 146.0 117 64.1
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.3e-31 139.8 112 57.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 8.6e-31 137.1 113 53.1
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.1e-30 136.7 82 76.8
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 6.8e-28 127.5 113 56.6
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.3e-26 123.2 107 53.3
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 1.1e-25 120.2 60 85.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-25 119.0 113 47.8
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 3.5e-24 115.2 57 84.2
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 4.6e-24 114.8 58 84.5
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 4.3e-22 108.2 103 50.5
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.2e-21 106.7 77 68.8
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 2.1e-21 105.9 154 44.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 3.6e-21 105.1 102 52.0
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 3.6e-21 105.1 99 51.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 8.0e-21 104.0 60 76.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 3.4e-19 98.6 96 49.0
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 3.7e-18 95.1 57 82.5
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.1e-17 93.6 113 44.2
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 9.2e-17 90.5 53 84.9
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.9e-14 82.8 80 56.2
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.3e-12 75.9 76 55.3
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.0e-12 75.1 55 61.8
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 6.4e-10 67.8 47 61.7
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 8.3e-10 67.4 95 35.8
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 7.8e-08 60.8 78 46.2


User provided reference genes

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