Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G124000 Populus trichocarpa HOM05D000120 ORTHO05D009410 5.2e-134 481.1 249 100.0
Sabra09G0095200 Salix brachista HOM05D000120 ORTHO05D009410 7.5e-117 424.1 252 89.7
Potri.004G162300 Populus trichocarpa HOM05D000120 ORTHO05D009410 6.0e-82 308.1 252 69.4
Manes.11G082300 Manihot esculenta HOM05D000120 ORTHO05D009410 6.2e-63 245.0 247 56.7
Manes.04G083900 Manihot esculenta HOM05D000120 ORTHO05D009410 1.1e-59 234.2 247 55.1
Dinv23458 Davidia involucrata HOM05D000120 ORTHO05D009410 5.3e-54 215.3 251 50.6
TWI79G0897 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 5.3e-54 215.3 235 53.6
TWI31G0702 Tripterygium wilfordii HOM05D000120 ORTHO05D009410 5.5e-51 205.3 235 52.8
Ciclev10029808m.g Citrus clementina HOM05D000120 ORTHO05D009410 2.8e-47 193.0 247 47.4
Sabra04G0109000 Salix brachista HOM05D000120 ORTHO05D009410 7.6e-45 184.9 251 48.6
GSVIVG01024178001 Vitis vinifera HOM05D000120 ORTHO05D009410 4.9e-44 182.2 248 45.2
Haze_02260 Corylus avellana HOM05D000120 ORTHO05D009410 2.7e-42 176.4 250 45.2
Duzib248G0587 Durio zibethinus HOM05D000120 ORTHO05D009410 2.7e-42 176.4 249 45.8
Thecc.02G075700 Theobroma cacao HOM05D000120 ORTHO05D009410 5.1e-41 172.2 244 45.1
Cfa005100 Carpinus fangiana HOM05D000722 ORTHO05D000590 8.7e-41 171.4 250 45.6
Duzib132G0615 Durio zibethinus HOM05D000120 ORTHO05D009410 1.9e-40 170.2 253 45.8
MD10G1063700 Malus domestica HOM05D000120 ORTHO05D009410 4.3e-40 169.1 258 45.7
MD00G1040100 Malus domestica HOM05D000120 ORTHO05D009410 3.7e-39 166.0 255 45.1
CsaV3_7G000360 Cucumis sativus L. HOM05D000120 ORTHO05D009410 5.9e-37 158.7 251 42.6
MELO3C002789.2 Cucumis melo HOM05D000120 ORTHO05D009410 1.0e-36 157.9 251 43.0
COL.COLO4_26040 Corchorus olitorius HOM05D000120 ORTHO05D009410 9.4e-35 151.4 258 41.9
Hma1.2p1_1244F.1_g270010 Hydrangea macrophylla HOM05D000120 ORTHO05D009410 9.4e-35 151.4 246 42.7
RcHm_v2.0_Chr6g0267851 Rosa chinensis HOM05D000120 ORTHO05D009410 1.6e-34 150.6 248 42.7
FAN20G2164 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.7e-34 149.8 250 41.6
vmacro02052 Vaccinium macrocarpon HOM05D000120 ORTHO05D009410 1.8e-33 147.1 254 41.3
Actinidia02243 Actinidia chinensis HOM05D000120 ORTHO05D009410 3.9e-33 146.0 222 41.0
FvH4_2g10380 Fragaria vesca HOM05D000120 ORTHO05D009410 4.3e-32 142.5 250 40.0
Prupe.8G085200 Prunus persica HOM05D000120 ORTHO05D009410 4.3e-32 142.5 244 39.3
Sed0018675 Sechium edule HOM05D000120 ORTHO05D009410 4.3e-32 142.5 287 34.8
Oeu055633.1 Olea europaea HOM05D000120 ORTHO05D009410 7.4e-32 141.7 249 40.6
TAR376G0786 Trochodendron aralioides HOM05D000120 ORTHO05D009410 7.4e-32 141.7 250 40.0
QL11p046369 Quercus lobata HOM05D000120 ORTHO05D009410 9.7e-32 141.4 372 32.0
FAN24G2037 Fragaria x ananassa HOM05D000120 ORTHO05D009410 2.2e-31 140.2 250 39.6
Duzib052G0028 Durio zibethinus HOM05D000120 ORTHO05D009410 2.8e-31 139.8 240 41.7
ClCG02G004590 Citrullus lanatus HOM05D000120 ORTHO05D009410 4.8e-31 139.0 243 39.9
AUR62016822 Chenopodium quinoa HOM05D000120 ORTHO05D009410 3.1e-30 136.3 254 39.0
Lj3g0001494 Lotus japonicus HOM05D000120 ORTHO05D009410 6.9e-30 135.2 245 38.4
AUR62010396 Chenopodium quinoa HOM05D000120 ORTHO05D009410 2.0e-29 133.7 254 39.4
CiPaw.06G128400 Carya illinoinensis HOM05D000120 ORTHO05D009410 2.6e-29 133.3 230 40.9
Eucgr.G01727 Eucalyptus grandis HOM05D000120 ORTHO05D009410 7.7e-29 131.7 250 36.8
Gohir.A12G041200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 7.7e-29 131.7 327 33.3
Sc08g0000840 Simmondsia chinensis HOM05D000120 ORTHO05D009410 1.3e-28 131.0 249 37.8
Hund00217 Selenicereus undatus HOM05D000120 ORTHO05D000105 2.2e-28 130.2 265 40.8
Gorai.008G031900 Gossypium raimondii HOM05D000120 ORTHO05D009410 2.9e-28 129.8 328 33.2
Lalb_Chr03g0030591 Lupinus albus HOM05D000120 ORTHO05D009410 6.5e-28 128.6 241 36.1
Sed0016080 Sechium edule HOM05D000120 ORTHO05D009410 1.1e-27 127.9 293 34.8
Glyma.06G246300 Glycine max HOM05D000120 ORTHO05D009410 3.2e-27 126.3 271 35.8
Atru.chr5.3139 Acer truncatum HOM05D000120 ORTHO05D009410 4.2e-27 125.9 227 37.4
CANSAT11G1664 Cannabis sativa HOM05D000120 ORTHO05D009410 5.5e-27 125.6 253 36.4
Peaxi162Scf00016g10015 Petunia axillaris HOM05D000120 ORTHO05D009410 5.5e-27 125.6 242 39.7
Ca_27169_v3 Cicer arietinum L. HOM05D000120 ORTHO05D009410 9.4e-27 124.8 252 36.5
FAN27G2529 Fragaria x ananassa HOM05D000120 ORTHO05D009410 9.4e-27 124.8 207 39.1
Solyc01g110350.2 Solanum lycopersicum HOM05D000120 ORTHO05D009410 2.7e-26 123.2 249 36.9
arahy.Tifrunner.gnm1.ann1.X3J0BR Arachis hypogaea HOM05D000120 ORTHO05D009410 4.7e-26 122.5 237 36.7
MSTRG.5421 Avicennia marina HOM05D000120 ORTHO05D009410 4.7e-26 122.5 223 39.9
TAR628G1238 Trochodendron aralioides HOM05D000120 ORTHO05D009410 1.4e-25 120.9 253 37.5
Sopen01g052500 Solanum pennellii HOM05D000120 ORTHO05D009410 1.8e-25 120.6 246 37.0
Nn7g36692 Nelumbo nucifera HOM05D000120 ORTHO05D009410 5.1e-25 119.0 271 35.4
PGSC0003DMG400046163 Solanum tuberosum HOM05D000120 ORTHO05D009410 8.8e-25 118.2 249 36.1
VMungo1127G0720 Vigna mungo HOM05D000120 ORTHO05D009410 3.3e-24 116.3 247 36.0
PGR042G1442 Punica granatum HOM05D000120 ORTHO05D009410 7.4e-24 115.2 260 33.1
Cc02_g16960 Coffea canephora HOM05D000120 ORTHO05D009410 4.8e-23 112.5 247 37.2
Phvul.011G156600 Phaseolus vulgaris HOM05D000120 ORTHO05D009410 6.3e-23 112.1 252 34.1
Cpa.g.sc150.20 Carica papaya HOM05D000120 ORTHO05D009410 8.2e-23 111.7 238 35.7
TPR.G31517 Trifolium pratense HOM05D000120 ORTHO05D009410 1.1e-22 111.3 251 35.9
Nitab4.5_0017990g0010 Nicotiana tabacum HOM05D000120 ORTHO05D009410 5.3e-22 109.0 244 36.5
Gohir.D12G031200 Gossypium hirsutum HOM05D000120 ORTHO05D009410 7.0e-22 108.6 204 35.8
Lsat_1_v5_gn_3_44160 Lactuca sativa HOM05D000120 ORTHO05D009410 9.1e-22 108.2 233 36.9
DCAR_022914 Daucus carota HOM05D000120 ORTHO05D009410 2.6e-21 106.7 264 33.3
PSO210G7327 Papaver somniferum HOM05D000120 ORTHO05D009410 3.4e-21 106.3 263 33.1
HanXRQChr15g0478301 Helianthus annuus HOM05D000120 ORTHO05D009410 4.2e-19 99.4 231 34.6
Psat4g137840 Pisum sativum HOM05D000120 ORTHO05D009410 6.1e-18 95.5 286 31.8
Aqoxy5G01485 Aquilegia oxysepala HOM05D000120 ORTHO05D009410 8.0e-18 95.1 253 32.0
CAN.G170.96 Capsicum annuum HOM05D000120 ORTHO05D009410 8.8e-17 91.7 248 35.1
Migut.B00178 Erythranthe guttata HOM05D000120 ORTHO05D009410 1.3e-15 87.8 237 34.6
SalBow6G2916 Salvia bowleyana HOM05D000120 ORTHO05D009410 2.2e-15 87.0 289 30.1
Os02g0469000 Oryza sativa ssp. japonica HOM05D000120 ORTHO05D009410 3.7e-15 86.3 239 28.5
ECA240G4650 Erigeron canadensis HOM05D000120 ORTHO05D009410 4.8e-15 85.9 222 36.5
SGA_v2.0_scaffold32G13221 Striga asiatica HOM05D000120 ORTHO05D009410 1.1e-14 84.7 246 30.9
unitig_747.g21207 Utricularia gibba HOM05D000120 ORTHO05D009410 4.1e-14 82.8 230 31.7
Zm00001eb180650 Zea mays HOM05D000120 ORTHO05D009410 2.0e-13 80.5 247 29.1
BcaB03g12236 Brassica carinata HOM05D011065 ORTHO05D009410 2.2e-12 77.0 255 29.8
BcaC01g00270 Brassica carinata HOM05D011065 ORTHO05D009410 5.0e-12 75.9 267 30.0
C03p77470 Brassica napus HOM05D011065 ORTHO05D009410 5.0e-12 75.9 267 30.0
BolC3t20002H Brassica oleracea HOM05D011065 ORTHO05D009410 5.0e-12 75.9 267 30.0
Thhalv10027283m.g Eutrema salsugineum HOM05D011065 ORTHO05D009410 2.5e-11 73.6 274 26.3
BraA08t34348Z Brassica rapa HOM05D011065 ORTHO05D009410 3.2e-11 73.2 261 28.4
Sp7g36860 Schrenkiella parvula HOM05D011065 ORTHO05D009410 1.2e-10 71.2 281 28.1
Aa31LG6G16270 Aethionema arabicum HOM05D011065 ORTHO05D009410 2.7e-10 70.1 259 27.4
A08p23900 Brassica napus HOM05D011065 ORTHO05D009410 2.7e-10 70.1 256 26.6
arahy.Tifrunner.gnm1.ann1.T5BQ73 Arachis hypogaea HOM05D000120 ORTHO05D009410 1.0e-09 68.2 78 51.3
BcaC01g00269 Brassica carinata HOM05D011065 ORTHO05D009410 1.0e-09 68.2 257 27.6
C03p77450 Brassica napus HOM05D011065 ORTHO05D009410 1.0e-09 68.2 257 27.6
BolC3t20000H Brassica oleracea HOM05D011065 ORTHO05D009410 1.0e-09 68.2 257 27.6
AT4G38980 Arabidopsis thaliana HOM05D011065 ORTHO05D009410 1.4e-09 67.8 275 28.7
Glyma.12G151000 Glycine max HOM05D000120 ORTHO05D009410 1.8e-09 67.4 65 49.2
FAN15G0678 Fragaria x ananassa HOM05D000722 ORTHO05D000590 6.7e-09 65.5 100 43.0
PSO170G1560 Papaver somniferum HOM05D000120 ORTHO05D009410 6.7e-09 65.5 171 29.2
AL7G10880 Arabidopsis lyrata HOM05D011065 ORTHO05D009410 8.8e-09 65.1 263 27.4
Carub.0007s0080 Capsella rubella HOM05D011065 ORTHO05D009410 1.5e-08 64.3 276 31.2
ATR0661G359 Amborella trichopoda HOM05D000120 ORTHO05D009410 5.7e-08 62.4 257 29.6
CDE04G2781 Ceratophyllum demersum HOM05D055785 ORTHO05D043884 1.8e-06 57.4 292 25.3
CDE02G1861 Ceratophyllum demersum HOM05D055785 ORTHO05D043884 3.1e-06 56.6 69 47.8


User provided reference genes

Program Settings