Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G121800 Populus trichocarpa HOM05D004825 ORTHO05D005415 1.3e-232 809.3 405 100.0
Potri.013G087950 Populus trichocarpa HOM05D004825 ORTHO05D005415 9.5e-178 627.1 409 77.3
Sabra13G0069900 Salix brachista HOM05D004825 ORTHO05D005415 2.5e-170 602.4 409 75.6
Cfa006284 Carpinus fangiana HOM05D004825 ORTHO05D005415 1.5e-151 540.0 410 64.9
Dinv09864 Davidia involucrata HOM05D004825 ORTHO05D005415 1.1e-146 523.9 410 63.9
Manes.09G184100 Manihot esculenta HOM05D004825 ORTHO05D005415 1.5e-146 523.5 413 62.7
FAN14G5305 Fragaria x ananassa HOM05D004825 ORTHO05D005415 1.2e-145 520.4 410 64.4
Sed0020944 Sechium edule HOM05D004825 ORTHO05D005415 1.8e-144 516.5 411 62.0
RcHm_v2.0_Chr3g0448251 Rosa chinensis HOM05D004825 ORTHO05D005415 6.8e-144 514.6 410 62.7
CsaV3_2G010380 Cucumis sativus L. HOM05D004825 ORTHO05D005415 7.6e-143 511.1 410 62.0
MELO3C008585.2 Cucumis melo HOM05D004825 ORTHO05D005415 2.2e-142 509.6 410 62.7
FAN05G3281 Fragaria x ananassa HOM05D004825 ORTHO05D005415 6.4e-142 508.1 410 62.9
TAR374G0592 Trochodendron aralioides HOM05D004825 ORTHO05D005415 8.4e-142 507.7 401 63.1
TWI59G0982 Tripterygium wilfordii HOM05D004825 ORTHO05D005415 1.4e-141 506.9 410 58.8
Actinidia06813 Actinidia chinensis HOM05D004825 ORTHO05D005415 7.1e-141 504.6 410 61.5
CiPaw.07G074800 Carya illinoinensis HOM05D004825 ORTHO05D005415 7.1e-141 504.6 402 63.4
FAN02G3908 Fragaria x ananassa HOM05D004825 ORTHO05D005415 2.1e-140 503.1 410 62.4
MD12G1258300 Malus domestica HOM05D004825 ORTHO05D005415 1.7e-139 500.0 409 60.9
FAN09G1822 Fragaria x ananassa HOM05D004825 ORTHO05D005415 3.0e-139 499.2 410 62.2
Haze_04525 Corylus avellana HOM05D004825 ORTHO05D005415 2.5e-138 496.1 410 61.5
GSVIVG01019145001 Vitis vinifera HOM05D004825 ORTHO05D005415 1.2e-137 493.8 432 57.6
Nn3g16227 Nelumbo nucifera HOM05D004825 ORTHO05D005415 1.8e-136 490.0 408 59.6
Hma1.2p1_0220F.1_g093020 Hydrangea macrophylla HOM05D004825 ORTHO05D005415 1.5e-135 486.9 412 59.5
Prupe.6G359000 Prunus persica HOM05D004825 ORTHO05D005415 1.5e-135 486.9 409 61.1
Ciclev10007912m.g Citrus clementina HOM05D004825 ORTHO05D005415 4.2e-133 478.8 408 59.8
Atru.chr12.2135 Acer truncatum HOM05D004825 ORTHO05D005415 1.6e-129 466.8 412 58.3
Thecc.05G205800 Theobroma cacao HOM05D004825 ORTHO05D005415 2.8e-129 466.1 409 59.4
Sc06g0005090 Simmondsia chinensis HOM05D004825 ORTHO05D005415 2.4e-128 463.0 409 57.5
PSO478G4613 Papaver somniferum HOM05D004825 ORTHO05D005415 5.3e-128 461.8 409 56.7
Eucgr.B01387 Eucalyptus grandis HOM05D004825 ORTHO05D005415 2.0e-127 459.9 407 59.0
CAN.G1086.4 Capsicum annuum HOM05D004825 ORTHO05D005415 2.4e-125 453.0 410 55.4
FvH4_6g00770 Fragaria vesca HOM05D004825 ORTHO05D005415 4.2e-125 452.2 358 64.5
DCAR_003341 Daucus carota HOM05D004825 ORTHO05D005415 9.3e-125 451.1 408 55.4
Aqoxy1G01799 Aquilegia oxysepala HOM05D004825 ORTHO05D005415 1.6e-124 450.3 421 55.6
Lj1g0016449 Lotus japonicus HOM05D004825 ORTHO05D005415 2.3e-123 446.4 433 53.6
PSO017G3896 Papaver somniferum HOM05D004825 ORTHO05D005415 3.9e-123 445.7 402 56.7
Sopen11g009760 Solanum pennellii HOM05D004825 ORTHO05D005415 8.7e-123 444.5 429 52.7
Cc09_g03390 Coffea canephora HOM05D004825 ORTHO05D005415 7.4e-122 441.4 412 54.6
Gohir.D09G053068 Gossypium hirsutum HOM05D004825 ORTHO05D005415 6.2e-121 438.3 400 57.8
Glyma.18G240200 Glycine max HOM05D004825 ORTHO05D005415 1.4e-120 437.2 430 52.6
VMungo1383G1726 Vigna mungo HOM05D004825 ORTHO05D005415 1.8e-120 436.8 428 54.2
Gorai.006G054700 Gossypium raimondii HOM05D004825 ORTHO05D005415 3.1e-120 436.0 400 57.5
CANSAT54G0263 Cannabis sativa HOM05D004825 ORTHO05D005415 5.3e-120 435.3 428 52.8
Phvul.008G056000 Phaseolus vulgaris HOM05D004825 ORTHO05D005415 3.4e-119 432.6 432 53.2
Lalb_Chr19g0126781 Lupinus albus HOM05D004825 ORTHO05D005415 1.7e-118 430.3 434 52.3
BolC2t08253H Brassica oleracea HOM05D004825 ORTHO05D005415 8.4e-118 427.9 411 54.7
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.9e-117 426.8 411 53.8
AT1G65080 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 3.2e-117 426.0 409 54.0
A02p13010 Brassica napus HOM05D004825 ORTHO05D005415 7.1e-117 424.9 411 54.3
C02p21130 Brassica napus HOM05D004825 ORTHO05D005415 9.3e-117 424.5 411 54.3
BraA02t06357Z Brassica rapa HOM05D004825 ORTHO05D005415 1.2e-116 424.1 411 54.3
CARHR104500 Cardamine hirsuta HOM05D004825 ORTHO05D005415 2.7e-116 422.9 403 53.6
Psat3g104280 Pisum sativum HOM05D004825 ORTHO05D005415 2.7e-116 422.9 414 52.7
arahy.Tifrunner.gnm1.ann1.B3BVJM Arachis hypogaea HOM05D004825 ORTHO05D005415 3.5e-116 422.5 418 52.9
Migut.I01185 Erythranthe guttata HOM05D004825 ORTHO05D005415 4.6e-116 422.2 409 52.8
BcaB05g24081 Brassica carinata HOM05D004825 ORTHO05D005415 7.9e-116 421.4 411 54.0
Carub.0002s1042 Capsella rubella HOM05D004825 ORTHO05D005415 1.3e-115 420.6 409 53.5
TPR.G29414 Trifolium pratense HOM05D004825 ORTHO05D005415 2.3e-115 419.9 432 50.7
Aa31LG2G2270 Aethionema arabicum HOM05D004825 ORTHO05D005415 3.0e-115 419.5 420 51.9
Duzib128G0048 Durio zibethinus HOM05D004825 ORTHO05D005415 3.0e-115 419.5 400 56.5
AL2G19720 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 3.9e-115 419.1 409 53.8
THA.LOC104814783 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 6.7e-115 418.3 410 53.4
Thhalv10022463m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 1.1e-114 417.5 409 53.1
BcaC01g02045 Brassica carinata HOM05D004825 ORTHO05D005415 2.8e-113 412.9 410 51.2
C03p69210 Brassica napus HOM05D004825 ORTHO05D005415 2.8e-113 412.9 410 51.2
MSTRG.10886 Avicennia marina HOM05D004825 ORTHO05D005415 3.7e-113 412.5 414 51.9
Thhalv10010266m.g Eutrema salsugineum HOM05D004825 ORTHO05D005415 3.7e-113 412.5 410 51.2
Sp5g19610 Schrenkiella parvula HOM05D004825 ORTHO05D005415 3.7e-113 412.5 411 53.3
SpUn0108_0010 Schrenkiella parvula HOM05D004825 ORTHO05D005415 3.7e-113 412.5 411 53.3
AT3G44370 Arabidopsis thaliana HOM05D004825 ORTHO05D005415 4.8e-113 412.1 410 51.5
BcaB01g01166 Brassica carinata HOM05D004825 ORTHO05D005415 4.8e-113 412.1 411 52.6
BolC3t19174H Brassica oleracea HOM05D004825 ORTHO05D005415 8.2e-113 411.4 410 51.0
Medtr7g079500 Medicago truncatula HOM05D004825 ORTHO05D005415 8.2e-113 411.4 431 50.3
Sp5g16820 Schrenkiella parvula HOM05D004825 ORTHO05D005415 2.4e-112 409.8 410 51.7
AL5G22530 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 5.3e-112 408.7 410 51.0
Carub.0005s1010 Capsella rubella HOM05D004825 ORTHO05D005415 5.3e-112 408.7 410 52.0
SGA_v2.0_scaffold122G33281 Striga asiatica HOM05D004825 ORTHO05D005415 5.3e-112 408.7 408 50.7
THA.LOC104805710 Tarenaya hassleriana HOM05D004825 ORTHO05D005415 2.0e-111 406.8 411 52.6
RcHm_v2.0_Chr3g0448211 Rosa chinensis HOM05D004825 ORTHO05D005415 7.6e-111 404.8 411 52.6
Hund07323 Selenicereus undatus HOM05D004825 ORTHO05D005415 2.2e-110 403.3 406 53.0
BraA06t25290Z Brassica rapa HOM05D004825 ORTHO05D005415 3.8e-110 402.5 410 50.5
A06p22020 Brassica napus HOM05D004825 ORTHO05D005415 8.4e-110 401.4 410 50.5
PGR119G2407 Punica granatum HOM05D004825 ORTHO05D005415 1.9e-109 400.2 411 51.8
EL10Ac4g09418 Beta vulgaris HOM05D004825 ORTHO05D005415 7.1e-109 398.3 406 53.2
HanXRQChr01g0025761 Helianthus annuus HOM05D004825 ORTHO05D005415 1.2e-108 397.5 404 49.8
BcaC03g14674 Brassica carinata HOM05D004825 ORTHO05D005415 1.0e-107 394.4 379 54.4
Peaxi162Scf01013g00123 Petunia axillaris HOM05D004825 ORTHO05D005415 3.3e-106 389.4 375 53.1
Ah.06g195620 Amaranthus hybridus HOM05D004825 ORTHO05D005415 7.4e-106 388.3 406 50.7
arahy.Tifrunner.gnm1.ann1.T0KW2L Arachis hypogaea HOM05D004825 ORTHO05D005415 2.8e-105 386.3 418 50.5
Lsat_1_v5_gn_8_2080 Lactuca sativa HOM05D004825 ORTHO05D005415 1.1e-104 384.4 404 49.5
Sabra09G0094100 Salix brachista HOM05D004825 ORTHO05D005415 1.2e-103 380.9 210 93.8
ECA233G4148 Erigeron canadensis HOM05D004825 ORTHO05D005415 3.4e-103 379.4 404 47.0
PGR119G0192 Punica granatum HOM05D004825 ORTHO05D005415 7.6e-103 378.3 413 49.9
HPP92_007971 Vanilla planifolia HOM05D004825 ORTHO05D005415 1.5e-95 354.0 405 45.4
ATR0582G066 Amborella trichopoda HOM05D004825 ORTHO05D005415 4.2e-93 345.9 401 44.9
CDE02G0647 Ceratophyllum demersum HOM05D004825 ORTHO05D005415 6.3e-89 332.0 400 46.5
Sopen11g007800 Solanum pennellii HOM05D004825 ORTHO05D005415 8.2e-89 331.6 309 53.4
Zm00001eb375410 Zea mays HOM05D004825 ORTHO05D005415 1.4e-88 330.9 431 42.0
AUR62000357 Chenopodium quinoa HOM05D004825 ORTHO05D005415 9.1e-88 328.2 505 39.8
MD12G1258500 Malus domestica HOM05D004825 ORTHO05D005415 1.9e-85 320.5 346 49.1
SalBow6G3714 Salvia bowleyana HOM05D004825 ORTHO05D005415 5.5e-85 318.9 340 49.1
AL5G22510 Arabidopsis lyrata HOM05D004825 ORTHO05D005415 5.3e-80 302.4 319 49.8
SalBow6G0845 Salvia bowleyana HOM05D004825 ORTHO05D005415 2.6e-79 300.1 666 31.1
AUR62006702 Chenopodium quinoa HOM05D004825 ORTHO05D005415 5.9e-79 298.9 408 44.1
Oeu023621.1 Olea europaea HOM05D004825 ORTHO05D005415 8.5e-78 295.0 283 54.1
Ca_07963_v3 Cicer arietinum L. HOM05D004825 ORTHO05D005415 1.2e-76 291.2 430 40.9
QL02p047782 Quercus lobata HOM05D004825 ORTHO05D005415 2.6e-74 283.5 178 72.5
Cpa.g.sc18.189 Carica papaya HOM05D004825 ORTHO05D005415 3.1e-72 276.6 246 59.3
SEGI_16462 Sequoiadendron giganteum HOM05D004825 ORTHO05D005415 1.5e-69 267.7 400 37.8
Gohir.A09G053766 Gossypium hirsutum HOM05D004825 ORTHO05D005415 6.8e-67 258.8 245 58.0
unitig_32.g11006 Utricularia gibba HOM05D004825 ORTHO05D005415 6.3e-65 252.3 310 44.5
Rhsim10G0138100 Rhododendron simsii HOM05D004825 ORTHO05D005415 1.4e-64 251.1 233 60.1
Solyc11g018740.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 4.1e-64 249.6 292 46.9
QL02p047766 Quercus lobata HOM05D004825 ORTHO05D005415 7.2e-61 238.8 216 60.6
ClCG11G007440 Citrullus lanatus HOM05D004825 ORTHO05D005415 1.7e-57 227.6 156 64.7
COL.COLO4_07809 Corchorus olitorius HOM05D004825 ORTHO05D005415 5.9e-55 219.2 178 59.0
Mapoly0072s0017 Marchantia polymorpha HOM05D004825 ORTHO05D005415 1.0e-54 218.4 404 31.9
vmacro12851 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 3.8e-54 216.5 216 55.1
Nitab4.5_0004158g0040 Nicotiana tabacum HOM05D004825 ORTHO05D005415 3.3e-53 213.4 226 53.1
Nitab4.5_0000167g0020 Nicotiana tabacum HOM05D004825 ORTHO05D005415 7.3e-53 212.2 217 53.5
AagrBONN_evm.TU.Sc2ySwM_340.165 Anthoceros agrestis HOM05D004825 ORTHO05D005415 2.0e-50 204.1 401 30.9
COL.COLO4_07810 Corchorus olitorius HOM05D004825 ORTHO05D005415 3.2e-48 196.8 166 60.2
Pp3c8_14790 Physcomitrium patens HOM05D004825 ORTHO05D005415 6.6e-46 189.1 301 33.6
ClCG11G007410 Citrullus lanatus HOM05D004825 ORTHO05D005415 5.6e-45 186.0 221 51.1
Gohir.A09G053832 Gossypium hirsutum HOM05D004825 ORTHO05D005415 4.0e-43 179.9 138 60.9
Lj2A408T57 Lonicera japonica HOM05D004825 ORTHO05D005415 3.9e-38 163.3 105 72.4
CARHR056570 Cardamine hirsuta HOM05D004825 ORTHO05D005415 9.5e-37 158.7 153 52.9
Solyc11g013080.3 Solanum lycopersicum HOM05D004825 ORTHO05D005415 2.1e-36 157.5 140 54.3
Nitab4.5_0000167g0010 Nicotiana tabacum HOM05D004825 ORTHO05D005415 8.1e-36 155.6 108 63.9
Solyc11g018720.1 Solanum lycopersicum HOM05D004825 ORTHO05D005415 1.1e-29 135.2 108 56.5
Nitab4.5_0004158g0050 Nicotiana tabacum HOM05D004825 ORTHO05D005415 1.6e-20 104.8 58 74.1
Nitab4.5_0004158g0060 Nicotiana tabacum HOM05D004825 ORTHO05D005415 4.0e-19 100.1 78 57.7
Cpa.g.c33279 Carica papaya HOM05D004825 ORTHO05D005415 1.7e-17 94.7 69 63.8
PGSC0003DMG400018032 Solanum tuberosum HOM05D004825 ORTHO05D005415 6.4e-17 92.8 70 58.6
PGSC0003DMG400014032 Solanum tuberosum HOM05D004825 ORTHO05D005415 1.6e-15 88.2 65 58.5
PGSC0003DMG401000916 Solanum tuberosum HOM05D004825 ORTHO05D005415 2.1e-15 87.8 65 60.0
MCO16G533 Micromonas commoda HOM05D004825 ORTHO05D005415 8.7e-14 82.4 430 23.7
DCAR_026472 Daucus carota HOM05D004825 ORTHO05D005415 5.6e-13 79.7 67 50.7
Aa31LG2G19680 Aethionema arabicum HOM05D003055 ORTHO05D005415 9.6e-13 79.0 53 62.3
Aa31LG7G1810 Aethionema arabicum HOM05D003055 ORTHO05D005415 9.6e-13 79.0 53 62.3
SGA_v2.0_scaffold71G24001 Striga asiatica HOM05D004825 ORTHO05D005415 4.8e-12 76.6 192 31.2
Glyma.09G252466 Glycine max HOM05D004825 ORTHO05D005415 7.1e-08 62.8 79 45.6
vmacro12850 Vaccinium macrocarpon HOM05D004825 ORTHO05D005415 7.1e-08 62.8 38 65.8


User provided reference genes

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