Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 0.0e+00 1330.5 723 100.0
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 0.0e+00 1075.1 711 79.9
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.1e-256 888.6 736 69.7
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 8.2e-241 837.4 736 66.0
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 2.7e-159 566.6 741 46.7
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.2e-132 477.2 745 41.5
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 1.7e-124 451.1 769 42.5
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 1.6e-122 444.5 751 41.4
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 3.2e-120 436.8 764 39.5
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 3.3e-117 426.8 748 41.6
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.7e-116 424.5 750 39.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.8e-110 404.4 773 38.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 5.2e-110 402.9 755 38.1
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 6.8e-110 402.5 763 37.2
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 3.7e-108 396.7 765 38.7
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 2.4e-107 394.0 756 38.2
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.0e-105 388.7 763 36.6
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.5e-104 384.8 759 38.3
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.0e-102 378.6 747 38.7
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.6e-101 374.0 753 36.9
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 1.3e-100 371.7 753 37.1
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 9.2e-99 365.5 744 38.0
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 4.3e-96 356.7 764 34.4
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 9.8e-93 345.5 442 47.7
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 4.9e-92 343.2 750 35.2
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 3.9e-89 333.6 787 35.1
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 5.0e-89 333.2 755 35.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 3.1e-86 323.9 787 33.7
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 7.5e-85 319.3 767 36.2
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 3.2e-83 313.9 758 34.6
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.1e-80 305.4 736 34.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 9.5e-80 302.4 747 36.1
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 8.1e-79 299.3 752 34.4
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 5.8e-77 293.1 787 34.6
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.7e-76 291.6 741 34.4
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.9e-76 290.8 777 32.0
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 2.9e-76 290.8 782 32.4
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.1e-75 287.0 743 32.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.2e-74 285.4 783 31.7
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 8.6e-73 279.3 741 33.6
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.3e-72 277.3 737 33.6
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 9.9e-69 265.8 784 31.4
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 7.1e-67 259.6 511 37.6
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.3e-65 255.4 585 34.0
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.9e-64 251.5 723 32.2
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 1.9e-64 251.5 774 30.9
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 5.2e-62 243.4 509 36.3
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.5e-61 241.9 749 30.0
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 7.6e-61 239.6 777 29.6
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 9.9e-61 239.2 774 29.7
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.3e-60 238.8 776 31.6
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 2.2e-60 238.0 777 29.6
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 3.8e-60 237.3 777 29.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.6e-57 226.5 630 31.0
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 6.6e-57 226.5 534 34.3
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 8.7e-57 226.1 643 32.3
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 2.5e-56 224.6 783 30.9
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.6e-55 221.9 519 33.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 6.9e-54 216.5 738 29.4
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 9.0e-54 216.1 759 31.6
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 1.5e-53 215.3 515 35.3
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 7.6e-53 213.0 776 28.6
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 3.8e-52 210.7 785 28.2
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.2e-51 207.2 530 33.6
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 4.2e-51 207.2 585 31.1
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.2e-50 205.7 465 34.0
Dinv23502 Davidia involucrata HOM05D007001 ORTHO05D005587 2.1e-50 204.9 527 32.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 1.3e-49 202.2 583 30.7
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.9e-48 198.4 602 29.6
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 4.3e-48 197.2 527 32.1
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.6e-47 195.3 516 33.1
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.7e-47 194.1 516 34.3
Gohir.A12G029800 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.1e-46 191.0 428 35.0
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 1.2e-45 189.1 473 31.7
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 2.0e-45 188.3 545 29.5
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 3.2e-43 181.0 475 34.3
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 2.1e-42 178.3 501 31.3
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 5.1e-41 173.7 443 34.1
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.1e-38 164.5 513 31.0
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 4.2e-35 154.1 247 43.7
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 5.5e-35 153.7 473 32.3
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.1e-34 151.8 498 29.1
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 2.7e-34 151.4 683 27.5
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 6.7e-33 146.7 260 40.8
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 6.7e-33 146.7 532 29.1
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 3.3e-32 144.4 483 30.0
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 7.4e-32 143.3 227 40.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 2.2e-31 141.7 660 27.6
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 1.1e-30 139.4 283 36.4
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.5e-29 135.6 633 26.1
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 4.5e-29 134.0 226 40.7
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 5.0e-28 130.6 685 23.9
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 9.4e-27 126.3 486 29.2
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 3.6e-26 124.4 287 35.9
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 4.6e-26 124.0 231 40.3
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 6.7e-25 120.2 288 35.8
Nn1g04928 Nelumbo nucifera HOM05D007001 ORTHO05D005587 1.5e-24 119.0 399 28.8
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.3e-23 115.9 291 35.1
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 5.3e-22 110.5 407 29.7
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 5.9e-21 107.1 289 33.2
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.3e-20 105.9 288 32.3
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-20 105.5 294 34.4
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.7e-20 105.5 291 33.3
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 5.0e-20 104.0 289 33.6
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.4e-19 102.4 292 32.2
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.4e-19 102.4 334 32.6
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.5e-19 101.7 101 53.5
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 5.5e-19 100.5 290 33.1
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 5.5e-19 100.5 290 33.1
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 7.2e-19 100.1 452 27.4
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.6e-18 97.8 290 32.1
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.6e-18 97.8 290 32.1
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 6.1e-18 97.1 256 32.0
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 7.9e-18 96.7 288 30.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.9e-17 94.4 164 40.2
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 5.1e-17 94.0 236 34.3
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 4.4e-16 90.9 289 30.1
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 4.4e-16 90.9 289 29.8
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 4.4e-16 90.9 233 33.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 6.3e-15 87.0 292 30.5
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 6.3e-15 87.0 292 30.5
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 6.3e-15 87.0 292 30.5
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.4e-14 85.1 207 33.8
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 2.5e-11 75.1 55 69.1
Os01g0687300 Oryza sativa ssp. japonica HOM05D024721 ORTHO05D025980 3.2e-11 74.7 279 27.6
MBI16_g35576_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.7e-10 71.6 72 52.8
HPP92_021324 Vanilla planifolia HOM05D007001 ORTHO05D005587 6.1e-10 70.5 285 27.0
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.0e-09 69.7 236 29.7
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 2.3e-09 68.6 95 40.0
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-08 65.5 261 28.0
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 1.3e-07 62.8 216 31.0
CDE04G2987 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.4e-06 59.3 210 32.4


User provided reference genes

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