Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 3.8e-34 147.9 92 100.0
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.8e-29 131.7 90 77.8
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 8.2e-29 130.2 89 79.8
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 6.8e-23 110.5 89 65.2
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.5e-22 109.4 89 65.2
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 3.4e-22 108.2 89 65.2
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 7.5e-22 107.1 90 63.3
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 3.7e-21 104.8 90 63.3
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.1e-20 103.2 89 64.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 2.4e-20 102.1 89 61.8
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.1e-20 101.3 89 60.7
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.1e-20 100.1 90 57.8
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 3.5e-19 98.2 90 58.9
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 3.5e-19 98.2 92 64.1
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.0e-18 96.7 89 61.8
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 1.3e-18 96.3 89 60.7
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 2.2e-18 95.5 92 58.7
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 3.8e-18 94.7 89 62.9
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 6.5e-18 94.0 90 58.9
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 2.5e-17 92.0 89 57.3
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 4.2e-17 91.3 89 56.2
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 1.6e-16 89.4 91 58.2
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 1.6e-16 89.4 91 56.0
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 3.6e-16 88.2 92 56.5
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 3.6e-16 88.2 88 58.0
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 4.7e-16 87.8 92 57.6
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 4.7e-16 87.8 92 55.4
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 4.7e-16 87.8 92 59.8
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 6.1e-16 87.4 89 56.2
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.0e-15 86.7 90 50.0
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.4e-15 86.3 91 56.0
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.8e-15 85.9 90 56.7
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 4.0e-15 84.7 93 53.8
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 4.0e-15 84.7 92 53.3
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.0e-15 84.7 92 53.3
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 4.0e-15 84.7 92 53.3
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 4.0e-15 84.7 93 53.8
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 5.2e-15 84.3 81 60.5
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 5.2e-15 84.3 89 51.7
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 6.8e-15 84.0 93 55.9
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 6.8e-15 84.0 89 50.6
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 6.8e-15 84.0 98 60.2
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 8.8e-15 83.6 90 52.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 8.8e-15 83.6 90 52.2
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 8.8e-15 83.6 93 54.8
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 1.2e-14 83.2 92 51.1
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.2e-14 83.2 91 51.6
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.2e-14 83.2 91 51.6
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-14 82.0 89 56.2
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-14 82.0 89 56.2
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.6e-14 82.0 89 56.2
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 3.4e-14 81.6 90 58.9
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 3.4e-14 81.6 91 52.7
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 4.4e-14 81.3 89 53.9
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 5.7e-14 80.9 91 57.1
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 7.5e-14 80.5 90 53.3
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 9.8e-14 80.1 87 56.3
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 9.8e-14 80.1 87 56.3
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 9.8e-14 80.1 89 51.7
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.3e-13 79.7 91 50.5
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 1.7e-13 79.3 89 52.8
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 2.2e-13 79.0 89 56.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.8e-13 78.6 89 53.9
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.8e-13 78.6 90 56.7
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-13 78.6 89 50.6
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 2.8e-13 78.6 89 50.6
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 3.7e-13 78.2 91 51.6
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 4.9e-13 77.8 92 50.0
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 6.3e-13 77.4 92 46.7
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 6.3e-13 77.4 89 51.7
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 8.3e-13 77.0 90 51.1
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 8.3e-13 77.0 89 51.7
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.1e-12 76.6 89 51.7
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 1.1e-12 76.6 89 51.7
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 1.1e-12 76.6 89 51.7
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.1e-12 76.6 89 51.7
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.1e-12 76.6 91 49.5
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 1.4e-12 76.3 92 47.8
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 1.4e-12 76.3 84 50.0
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 1.8e-12 75.9 91 52.7
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 2.4e-12 75.5 91 50.5
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 2.4e-12 75.5 44 79.5
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.4e-12 75.5 89 51.7
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.4e-12 75.5 95 47.4
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 3.1e-12 75.1 91 50.5
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 9.2e-12 73.6 92 50.0
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 1.6e-11 72.8 89 47.2
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 2.0e-11 72.4 83 48.2
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 2.7e-11 72.0 85 48.2
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 2.7e-11 72.0 81 53.1
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 4.5e-11 71.2 90 45.6
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 5.9e-11 70.9 89 47.2
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 5.9e-11 70.9 90 50.0
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 7.8e-11 70.5 88 48.9
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.3e-10 69.7 90 44.4
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.7e-10 69.3 83 47.0
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 2.3e-10 68.9 94 46.8
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 2.9e-10 68.6 83 50.6
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 3.8e-10 68.2 83 51.8
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 6.6e-10 67.4 84 47.6
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 1.9e-09 65.9 89 41.6
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 3.3e-09 65.1 81 51.9
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 3.3e-09 65.1 90 47.8
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 1.6e-08 62.8 40 75.0
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 6.1e-08 60.8 83 47.0
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 6.1e-08 60.8 83 47.0
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 1.0e-07 60.1 46 63.0
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.4e-07 59.7 75 49.3
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.0e-07 58.5 89 40.4
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 4.0e-07 58.2 80 45.0
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 6.8e-07 57.4 53 58.5
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 6.8e-07 57.4 30 80.0
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.4e-06 55.1 41 56.1
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.7e-06 54.3 92 42.4


User provided reference genes

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