Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 3.6e-63 245.4 137 100.0
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 3.5e-50 202.2 121 83.5
Sabra09G0087900 Salix brachista HOM05D007556 ORTHO05D002252 3.0e-25 119.4 88 86.4
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 4.4e-21 105.5 92 57.6
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 2.4e-19 99.8 137 43.8
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 3.2e-19 99.4 98 52.0
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 1.2e-18 97.4 146 43.8
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 4.6e-18 95.5 140 42.9
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 1.3e-17 94.0 145 44.1
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 2.3e-17 93.2 143 42.0
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 1.9e-16 90.1 95 48.4
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 1.9e-16 90.1 137 38.7
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.5e-16 89.7 95 47.4
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 3.3e-16 89.4 96 52.1
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 4.3e-16 89.0 103 46.6
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 9.6e-16 87.8 103 46.6
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 1.3e-15 87.4 140 39.3
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 1.6e-15 87.0 159 45.3
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 2.1e-15 86.7 92 50.0
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.1e-15 86.7 140 40.0
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.8e-15 86.3 131 38.2
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 3.6e-15 85.9 103 47.6
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 4.8e-15 85.5 104 45.2
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 6.2e-15 85.1 100 44.0
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 1.4e-14 84.0 133 38.3
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 4.0e-14 82.4 96 51.0
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 5.3e-14 82.0 99 47.5
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.0e-13 80.1 145 38.6
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 2.6e-13 79.7 102 45.1
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 3.4e-13 79.3 144 39.6
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 4.5e-13 79.0 106 45.3
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 5.8e-13 78.6 150 40.0
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 7.6e-13 78.2 86 47.7
Ciclev10013967m.g Citrus clementina HOM05D060443 ORTHO05D002252 9.9e-13 77.8 102 48.0
CSS0039349 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 1.3e-12 77.4 113 46.9
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 1.3e-12 77.4 96 42.7
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 2.2e-12 76.6 117 44.4
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 2.2e-12 76.6 139 36.7
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 2.2e-12 76.6 91 46.2
Aqoxy2G01755 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 2.9e-12 76.3 128 38.3
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 6.4e-12 75.1 97 42.3
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 8.4e-12 74.7 96 44.8
COL.COLO4_25910 Corchorus olitorius HOM05D007556 ORTHO05D002252 1.1e-11 74.3 145 37.9
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.1e-11 74.3 96 40.6
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.9e-11 73.6 84 45.2
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 3.2e-11 72.8 94 40.4
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 4.2e-11 72.4 93 45.2
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 4.2e-11 72.4 92 45.7
COL.COLO4_03329 Corchorus olitorius HOM05D007556 ORTHO05D002252 4.2e-11 72.4 146 39.0
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 9.3e-11 71.2 100 40.0
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.2e-10 70.9 93 44.1
CiPaw.06G136300 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.2e-10 70.9 157 32.5
COL.COLO4_11794 Corchorus olitorius HOM05D007556 ORTHO05D002252 1.2e-10 70.9 141 36.9
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 1.2e-10 70.9 89 42.7
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.6e-10 70.5 86 41.9
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 2.1e-10 70.1 96 38.5
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 2.1e-10 70.1 99 41.4
CANSAT56G0346 Cannabis sativa HOM05D007556 ORTHO05D002252 2.7e-10 69.7 106 44.3
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.6e-10 68.9 101 43.6
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 6.0e-10 68.6 96 38.5
Psat0s1116g0120 Pisum sativum HOM05D010359 ORTHO05D002252 6.0e-10 68.6 97 39.2
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 7.9e-10 68.2 96 39.6
SGA_v2.0_scaffold55G19792 Striga asiatica HOM05D007556 ORTHO05D002252 7.9e-10 68.2 94 40.4
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.0e-09 67.8 88 43.2
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.0e-09 67.8 101 42.6
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 1.0e-09 67.8 96 39.6
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 1.3e-09 67.4 96 35.4
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 1.8e-09 67.0 86 44.2
Psat5g006520 Pisum sativum HOM05D010359 ORTHO05D002252 1.8e-09 67.0 136 41.9
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 1.8e-09 67.0 139 30.2
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 1.8e-09 67.0 98 44.9
Cc05_g01670 Coffea canephora HOM05D007556 ORTHO05D002252 2.3e-09 66.6 101 42.6
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 2.3e-09 66.6 98 44.9
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 3.0e-09 66.2 96 35.4
Peaxi162Scf00152g00130 Petunia axillaris HOM05D007556 ORTHO05D002252 3.0e-09 66.2 98 40.8
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 3.0e-09 66.2 96 39.6
TWI79G1510 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 3.9e-09 65.9 103 44.7
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 5.1e-09 65.5 88 42.0
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 5.1e-09 65.5 105 40.0
Manes.10G047933 Manihot esculenta HOM05D007556 ORTHO05D002252 5.1e-09 65.5 76 50.0
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.1e-09 65.5 91 44.0
Ciclev10030337m.g Citrus clementina HOM05D060443 ORTHO05D002252 6.7e-09 65.1 85 45.9
Psat5g006600 Pisum sativum HOM05D010359 ORTHO05D002252 6.7e-09 65.1 86 41.9
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 8.7e-09 64.7 96 34.4
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 8.7e-09 64.7 91 41.8
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 1.1e-08 64.3 92 35.9
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.5e-08 63.9 88 42.0
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 1.5e-08 63.9 92 38.0
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 3.3e-08 62.8 84 38.1
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 3.3e-08 62.8 96 34.4
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 4.3e-08 62.4 96 40.6
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 4.3e-08 62.4 84 36.9
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 5.6e-08 62.0 84 38.1
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 5.6e-08 62.0 96 39.6
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 5.6e-08 62.0 96 38.5
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 5.6e-08 62.0 90 41.1
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 5.6e-08 62.0 87 41.4
VMungo1127G0650 Vigna mungo HOM05D007556 ORTHO05D002252 5.6e-08 62.0 96 37.5
CiPaw.06G136400 Carya illinoinensis HOM05D007556 ORTHO05D002252 7.4e-08 61.6 123 34.1
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.4e-08 61.6 91 40.7
TPR.G24483 Trifolium pratense HOM05D010359 ORTHO05D002252 7.4e-08 61.6 97 38.1
Lj3g0003579 Lotus japonicus HOM05D010359 ORTHO05D002252 9.6e-08 61.2 97 36.1
PGSC0003DMG400010828 Solanum tuberosum HOM05D007556 ORTHO05D002252 9.6e-08 61.2 84 42.9
Psat5g006560 Pisum sativum HOM05D010359 ORTHO05D002252 1.3e-07 60.8 86 41.9
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.3e-07 60.8 81 39.5
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 1.3e-07 60.8 87 40.2
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.6e-07 60.5 86 37.2
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-07 60.5 111 45.9
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-07 60.5 67 49.3
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.6e-07 60.5 101 42.6
PGR042G3705 Punica granatum HOM05D007556 ORTHO05D002252 1.6e-07 60.5 137 31.4
TPR.G38150 Trifolium pratense HOM05D010359 ORTHO05D002252 1.6e-07 60.5 94 40.4
CANSAT56G4301 Cannabis sativa HOM05D007556 ORTHO05D002252 2.1e-07 60.1 104 39.4
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 2.1e-07 60.1 95 34.7
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 2.1e-07 60.1 100 40.0
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 2.1e-07 60.1 86 40.7
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 2.1e-07 60.1 87 36.8
EL10Ac9g21743 Beta vulgaris HOM05D013587 ORTHO05D002252 2.8e-07 59.7 121 27.3
CAN.G132.5 Capsicum annuum HOM05D007556 ORTHO05D002252 2.8e-07 59.7 91 44.0
FAN24G1835 Fragaria x ananassa HOM05D018529 ORTHO05D016305 2.8e-07 59.7 142 29.6
FAN24G2462 Fragaria x ananassa HOM05D018529 ORTHO05D016305 2.8e-07 59.7 142 29.6
Lj3g0013453 Lotus japonicus HOM05D010359 ORTHO05D002252 2.8e-07 59.7 96 33.3
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 2.8e-07 59.7 86 38.4
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 2.8e-07 59.7 96 35.4
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 3.7e-07 59.3 86 39.5
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 4.8e-07 58.9 87 39.1
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 4.8e-07 58.9 111 34.2
PGR042G1382 Punica granatum HOM05D007556 ORTHO05D002252 4.8e-07 58.9 110 36.4
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 6.2e-07 58.5 86 37.2
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 6.2e-07 58.5 81 38.3
Medtr4g069810 Medicago truncatula HOM05D010359 ORTHO05D002252 6.2e-07 58.5 100 34.0
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 6.2e-07 58.5 97 38.1
Glyma.11G119000 Glycine max HOM05D010359 ORTHO05D002252 8.1e-07 58.2 97 39.2
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 1.1e-06 57.8 94 37.2
DCAR_022107 Daucus carota HOM05D007556 ORTHO05D002252 1.1e-06 57.8 105 37.1
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 1.4e-06 57.4 93 37.6
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.4e-06 57.4 77 42.9
arahy.Tifrunner.gnm1.ann1.JI131A Arachis hypogaea HOM05D023705 ORTHO05D002252 1.8e-06 57.0 96 39.6
RcHm_v2.0_Chr6g0263961 Rosa chinensis HOM05D018529 ORTHO05D016305 1.8e-06 57.0 153 28.8
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 1.8e-06 57.0 87 39.1
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 2.4e-06 56.6 88 36.4
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 2.4e-06 56.6 96 35.4
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 2.4e-06 56.6 86 40.7
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 2.4e-06 56.6 77 42.9
arahy.Tifrunner.gnm1.ann1.9WD8WJ Arachis hypogaea HOM05D007227 ORTHO05D002252 3.1e-06 56.2 87 37.9
Ciclev10029484m.g Citrus clementina HOM05D007556 ORTHO05D002252 3.1e-06 56.2 94 34.0
Cc02_g17690 Coffea canephora HOM05D007556 ORTHO05D002252 3.1e-06 56.2 109 35.8
Lj1g0025376 Lotus japonicus HOM05D007227 ORTHO05D002252 3.1e-06 56.2 86 36.0
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 4.0e-06 55.8 93 38.7
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 4.0e-06 55.8 80 38.8
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 4.0e-06 55.8 86 37.2
arahy.Tifrunner.gnm1.ann1.24P8DN Arachis hypogaea HOM05D007227 ORTHO05D002252 5.3e-06 55.5 82 41.5
PGR142G1531 Punica granatum HOM05D007227 ORTHO05D002252 5.3e-06 55.5 98 36.7
Sabra04G0101600 Salix brachista HOM05D007227 ORTHO05D002252 5.3e-06 55.5 87 39.1
Hund00277 Selenicereus undatus HOM05D013587 ORTHO05D002252 5.3e-06 55.5 123 31.7
Psat5g006440 Pisum sativum HOM05D010359 ORTHO05D002252 6.9e-06 55.1 98 34.7
Cfa007848 Carpinus fangiana HOM05D033200 ORTHO05D022252 9.0e-06 54.7 53 50.9
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 9.0e-06 54.7 98 34.7
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 9.0e-06 54.7 96 35.4


User provided reference genes

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