Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G114701 Populus trichocarpa HOM05D007556 ORTHO05D002252 6.3e-65 251.5 238 100.0
Potri.009G114800 Populus trichocarpa HOM05D007556 ORTHO05D002252 2.6e-50 203.0 121 83.5
Sabra09G0087900 Salix brachista HOM05D007556 ORTHO05D002252 1.9e-24 117.1 88 69.3
Dinv23538 Davidia involucrata HOM05D007556 ORTHO05D002252 6.2e-20 102.1 114 46.5
Actinidia00509 Actinidia chinensis HOM05D007556 ORTHO05D002252 1.1e-19 101.3 92 54.3
TWI79G0288 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 2.6e-18 96.7 117 49.6
TAR628G1474 Trochodendron aralioides HOM05D007556 ORTHO05D002252 5.8e-18 95.5 115 44.3
COL.COLO4_11793 Corchorus olitorius HOM05D007556 ORTHO05D002252 7.6e-18 95.1 133 47.4
Dinv42073 Davidia involucrata HOM05D007227 ORTHO05D002252 3.8e-17 92.8 106 44.3
Rhsim11G0175800 Rhododendron simsii HOM05D007556 ORTHO05D002252 3.8e-17 92.8 102 46.1
Rhsim11G0175600 Rhododendron simsii HOM05D007556 ORTHO05D002252 6.4e-17 92.0 103 47.6
Thecc.02G086800 Theobroma cacao HOM05D007556 ORTHO05D002252 8.4e-17 91.7 96 54.2
Aqoxy5G01653 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 2.4e-16 90.1 124 42.7
Duzib132G0033 Durio zibethinus HOM05D007556 ORTHO05D002252 2.4e-16 90.1 130 45.4
Rhsim11G0175400 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.4e-16 90.1 103 46.6
vmacro17186 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 9.3e-16 88.2 103 47.6
vmacro02121 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 1.2e-15 87.8 92 48.9
Rhsim11G0175100 Rhododendron simsii HOM05D007556 ORTHO05D002252 2.1e-15 87.0 104 45.2
GSVIVG01031943001 Vitis vinifera HOM05D007556 ORTHO05D002252 3.5e-15 86.3 95 46.3
QL11p043321 Quercus lobata HOM05D007556 ORTHO05D002252 4.6e-15 85.9 95 45.3
TAR628G0569 Trochodendron aralioides HOM05D007556 ORTHO05D002252 7.9e-15 85.1 115 39.1
Nitab4.5_0000959g0110 Nicotiana tabacum HOM05D007556 ORTHO05D002252 1.0e-14 84.7 140 38.6
GSVIVG01031946001 Vitis vinifera HOM05D007556 ORTHO05D002252 2.3e-14 83.6 112 42.0
Atru.chr5.2995 Acer truncatum HOM05D007556 ORTHO05D002252 3.9e-14 82.8 118 45.8
COL.COLO4_37463 Corchorus olitorius HOM05D007556 ORTHO05D002252 5.1e-14 82.4 121 45.5
Dinv23539 Davidia involucrata HOM05D007227 ORTHO05D002252 5.1e-14 82.4 104 44.2
CSS0014637 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 1.5e-13 80.9 96 50.0
Gohir.D04G164160 Gossypium hirsutum HOM05D007556 ORTHO05D002252 9.6e-13 78.2 104 46.2
Thecc.02G086700 Theobroma cacao HOM05D007556 ORTHO05D002252 9.6e-13 78.2 123 43.1
Atru.chr5.2996 Acer truncatum HOM05D007556 ORTHO05D002252 1.6e-12 77.4 121 43.0
vmacro02123 Vaccinium macrocarpon HOM05D007556 ORTHO05D002252 2.1e-12 77.0 84 45.2
Ciclev10013967m.g Citrus clementina HOM05D060443 ORTHO05D002252 3.7e-12 76.3 95 47.4
CSS0039349 Camellia sinensis var. sinensis HOM05D007556 ORTHO05D002252 6.2e-12 75.5 113 46.0
Oeu014344.1 Olea europaea HOM05D007556 ORTHO05D002252 6.2e-12 75.5 64 54.7
GSVIVG01031948001 Vitis vinifera HOM05D007556 ORTHO05D002252 6.2e-12 75.5 98 41.8
Cfa005018 Carpinus fangiana HOM05D007227 ORTHO05D002252 8.1e-12 75.1 110 36.4
Prupe.8G099400 Prunus persica HOM05D007556 ORTHO05D002252 1.4e-11 74.3 96 44.8
Aqoxy2G01755 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 1.8e-11 73.9 112 39.3
Gorai.012G152300 Gossypium raimondii HOM05D007556 ORTHO05D002252 1.8e-11 73.9 102 43.1
COL.COLO4_25915 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.4e-11 73.6 121 42.1
Gohir.A04G122100 Gossypium hirsutum HOM05D007556 ORTHO05D002252 2.4e-11 73.6 107 42.1
Prupe.8G099600 Prunus persica HOM05D007556 ORTHO05D002252 3.1e-11 73.2 91 44.0
COL.COLO4_25910 Corchorus olitorius HOM05D007556 ORTHO05D002252 4.0e-11 72.8 123 40.7
Prupe.8G098800 Prunus persica HOM05D007556 ORTHO05D002252 4.0e-11 72.8 103 43.7
Peaxi162Scf00684g00413 Petunia axillaris HOM05D007556 ORTHO05D002252 5.3e-11 72.4 97 41.2
Nitab4.5_0002168g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 9.0e-11 71.6 104 44.2
CiPaw.06G136300 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.2e-10 71.2 114 41.2
Glyma.04G013400 Glycine max HOM05D007227 ORTHO05D002252 1.2e-10 71.2 96 37.5
Aqoxy5G01668 Aquilegia oxysepala HOM05D007556 ORTHO05D002252 1.5e-10 70.9 100 41.0
COL.COLO4_03329 Corchorus olitorius HOM05D007556 ORTHO05D002252 2.6e-10 70.1 124 41.9
TWI79G1510 Tripterygium wilfordii HOM05D007556 ORTHO05D002252 2.6e-10 70.1 109 44.0
Prupe.8G098600 Prunus persica HOM05D007556 ORTHO05D002252 3.4e-10 69.7 99 41.4
Thecc.02G037700 Theobroma cacao HOM05D007227 ORTHO05D002252 4.5e-10 69.3 108 38.0
Gorai.002G211000 Gossypium raimondii HOM05D007227 ORTHO05D002252 5.8e-10 68.9 103 36.9
Nitab4.5_0010789g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 5.8e-10 68.9 103 41.7
GSVIVG01031940001 Vitis vinifera HOM05D007227 ORTHO05D002252 5.8e-10 68.9 104 33.7
CiPaw.06G136500 Carya illinoinensis HOM05D007556 ORTHO05D002252 7.6e-10 68.6 92 43.5
CiPaw.06G136700 Carya illinoinensis HOM05D007227 ORTHO05D002252 7.6e-10 68.6 86 40.7
Gorai.005G261600 Gossypium raimondii HOM05D007227 ORTHO05D002252 1.0e-09 68.2 102 41.2
Psat7g141720 Pisum sativum HOM05D007227 ORTHO05D002252 1.0e-09 68.2 112 34.8
QL11p043287 Quercus lobata HOM05D007227 ORTHO05D002252 1.0e-09 68.2 98 39.8
Gohir.D01G169400 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.3e-09 67.8 109 34.9
Cfa005014 Carpinus fangiana HOM05D007556 ORTHO05D002252 1.7e-09 67.4 93 41.9
Nitab4.5_0000618g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.8e-09 66.2 103 41.7
CANSAT56G0346 Cannabis sativa HOM05D007556 ORTHO05D002252 4.9e-09 65.9 106 41.5
Cfa005016 Carpinus fangiana HOM05D007556 ORTHO05D002252 4.9e-09 65.9 93 40.9
Gohir.A01G178500 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.9e-09 65.9 109 34.9
Gohir.A03G212200 Gossypium hirsutum HOM05D007227 ORTHO05D002252 4.9e-09 65.9 102 40.2
Nitab4.5_0002102g0030 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.9e-09 65.9 103 40.8
CiPaw.05G063200 Carya illinoinensis HOM05D007227 ORTHO05D002252 6.4e-09 65.5 92 35.9
Glyma.06G013300 Glycine max HOM05D007227 ORTHO05D002252 8.4e-09 65.1 96 35.4
Manes.07G098400 Manihot esculenta HOM05D007556 ORTHO05D002252 1.1e-08 64.7 99 40.4
Nitab4.5_0002053g0110 Nicotiana tabacum HOM05D000024 ORTHO05D000007 1.1e-08 64.7 89 42.7
Gohir.D02G233600 Gossypium hirsutum HOM05D007227 ORTHO05D002252 1.4e-08 64.3 102 39.2
Phvul.011G046400 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 1.4e-08 64.3 108 35.2
Solyc10g009150.3 Solanum lycopersicum HOM05D007556 ORTHO05D002252 1.4e-08 64.3 98 42.9
Sopen10g004930 Solanum pennellii HOM05D007556 ORTHO05D002252 1.9e-08 63.9 98 42.9
CSS0037950 Camellia sinensis var. sinensis HOM05D007227 ORTHO05D002252 2.5e-08 63.5 103 35.9
Manes.17G100100 Manihot esculenta HOM05D007227 ORTHO05D002252 3.2e-08 63.2 86 41.9
Psat0s1116g0120 Pisum sativum HOM05D010359 ORTHO05D002252 3.2e-08 63.2 97 36.1
SGA_v2.0_scaffold55G19792 Striga asiatica HOM05D007556 ORTHO05D002252 3.2e-08 63.2 84 36.9
Eucgr.I01259 Eucalyptus grandis HOM05D007227 ORTHO05D002252 4.2e-08 62.8 86 40.7
Hma1.2p1_0066F.1_g036560 Hydrangea macrophylla HOM05D007556 ORTHO05D002252 4.2e-08 62.8 92 38.0
Nitab4.5_0002892g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 4.2e-08 62.8 104 40.4
Peaxi162Scf00152g00130 Petunia axillaris HOM05D007556 ORTHO05D002252 4.2e-08 62.8 98 39.8
Lalb_Chr19g0138601 Lupinus albus HOM05D007227 ORTHO05D002252 5.5e-08 62.4 109 35.8
Medtr4g069770 Medicago truncatula HOM05D007227 ORTHO05D002252 5.5e-08 62.4 96 36.5
TPR.G9008 Trifolium pratense HOM05D007227 ORTHO05D002252 5.5e-08 62.4 96 37.5
Nitab4.5_0002168g0020 Nicotiana tabacum HOM05D007556 ORTHO05D002252 7.1e-08 62.0 104 42.3
Ciclev10030337m.g Citrus clementina HOM05D060443 ORTHO05D002252 1.2e-07 61.2 85 43.5
Manes.10G047933 Manihot esculenta HOM05D007556 ORTHO05D002252 1.2e-07 61.2 76 44.7
CiPaw.06G136400 Carya illinoinensis HOM05D007556 ORTHO05D002252 1.6e-07 60.8 106 36.8
FvH4_2g08520 Fragaria vesca HOM05D007227 ORTHO05D002252 2.1e-07 60.5 84 36.9
arahy.Tifrunner.gnm1.ann1.16ZZBQ Arachis hypogaea HOM05D007227 ORTHO05D002252 2.7e-07 60.1 96 38.5
FAN27G2103 Fragaria x ananassa HOM05D007227 ORTHO05D002252 2.7e-07 60.1 84 35.7
Medtr4g069810 Medicago truncatula HOM05D010359 ORTHO05D002252 2.7e-07 60.1 135 30.4
Psat5g006520 Pisum sativum HOM05D010359 ORTHO05D002252 2.7e-07 60.1 86 39.5
Psat5g006560 Pisum sativum HOM05D010359 ORTHO05D002252 2.7e-07 60.1 86 40.7
Psat5g006600 Pisum sativum HOM05D010359 ORTHO05D002252 2.7e-07 60.1 86 38.4
COL.COLO4_11794 Corchorus olitorius HOM05D007556 ORTHO05D002252 3.5e-07 59.7 117 37.6
FAN24G3084 Fragaria x ananassa HOM05D007227 ORTHO05D002252 3.5e-07 59.7 84 36.9
Manes.15G164600 Manihot esculenta HOM05D007227 ORTHO05D002252 3.5e-07 59.7 80 41.2
Nitab4.5_0000959g0100 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.5e-07 59.7 67 47.8
LjContig00081g0009252 Lotus japonicus HOM05D007227 ORTHO05D002252 4.6e-07 59.3 93 35.5
Oeu014341.1 Olea europaea HOM05D007227 ORTHO05D002252 4.6e-07 59.3 96 34.4
Psat2g007160 Pisum sativum HOM05D007227 ORTHO05D002252 4.6e-07 59.3 86 39.5
PGR042G1382 Punica granatum HOM05D007556 ORTHO05D002252 4.6e-07 59.3 117 37.6
TPR.G38124 Trifolium pratense HOM05D007227 ORTHO05D002252 4.6e-07 59.3 86 39.5
Actinidia00511 Actinidia chinensis HOM05D007227 ORTHO05D002252 6.0e-07 58.9 87 37.9
Ciclev10029484m.g Citrus clementina HOM05D007556 ORTHO05D002252 6.0e-07 58.9 111 32.4
Eucgr.G00440 Eucalyptus grandis HOM05D040694 ORTHO05D002252 6.0e-07 58.9 95 35.8
Glyma.11G119200 Glycine max HOM05D007227 ORTHO05D002252 6.0e-07 58.9 96 36.5
MD00G1082000 Malus domestica HOM05D007227 ORTHO05D002252 6.0e-07 58.9 103 38.8
Psat2g007200 Pisum sativum HOM05D007227 ORTHO05D002252 6.0e-07 58.9 86 40.7
CANSAT56G4301 Cannabis sativa HOM05D007556 ORTHO05D002252 7.9e-07 58.5 104 38.5
RcHm_v2.0_Chr6g0263881 Rosa chinensis HOM05D007227 ORTHO05D002252 7.9e-07 58.5 118 32.2
TPR.G8589 Trifolium pratense HOM05D007227 ORTHO05D002252 7.9e-07 58.5 112 35.7
FAN15G1220 Fragaria x ananassa HOM05D007227 ORTHO05D002252 1.0e-06 58.2 86 36.0
Phvul.011G046250 Phaseolus vulgaris HOM05D010359 ORTHO05D002252 1.0e-06 58.2 103 36.9
TWI75G0964 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 1.0e-06 58.2 77 42.9
Lj3g0003579 Lotus japonicus HOM05D010359 ORTHO05D002252 1.3e-06 57.8 88 34.1
VMungo1127G0650 Vigna mungo HOM05D007556 ORTHO05D002252 1.3e-06 57.8 96 35.4
arahy.Tifrunner.gnm1.ann1.BHH580 Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-06 57.0 87 37.9
arahy.Tifrunner.gnm1.ann1.ZTQ30L Arachis hypogaea HOM05D007227 ORTHO05D002252 2.3e-06 57.0 99 38.4
Lj3g0013453 Lotus japonicus HOM05D010359 ORTHO05D002252 2.3e-06 57.0 84 35.7
Manes.07G098500 Manihot esculenta HOM05D007556 ORTHO05D002252 2.3e-06 57.0 90 36.7
Phvul.009G024600 Phaseolus vulgaris HOM05D007227 ORTHO05D002252 2.3e-06 57.0 102 34.3
Nitab4.5_0000295g0010 Nicotiana tabacum HOM05D007556 ORTHO05D002252 3.0e-06 56.6 77 41.6
PGR042G3705 Punica granatum HOM05D007556 ORTHO05D002252 3.0e-06 56.6 116 32.8
VMungo1127G0518 Vigna mungo HOM05D007227 ORTHO05D002252 3.0e-06 56.6 96 33.3
EL10Ac9g21739 Beta vulgaris HOM05D007227 ORTHO05D002252 3.9e-06 56.2 78 43.6
Medtr5g095980 Medicago truncatula HOM05D007227 ORTHO05D002252 3.9e-06 56.2 86 40.7
TPR.G24483 Trifolium pratense HOM05D010359 ORTHO05D002252 3.9e-06 56.2 97 35.1
TPR.G38150 Trifolium pratense HOM05D010359 ORTHO05D002252 3.9e-06 56.2 103 37.9
COL.COLO4_17856 Corchorus olitorius HOM05D007227 ORTHO05D002252 5.1e-06 55.8 95 41.1
Glyma.02G300900 Glycine max HOM05D007227 ORTHO05D002252 5.1e-06 55.8 109 33.0
Glyma.12G044400 Glycine max HOM05D007227 ORTHO05D002252 5.1e-06 55.8 93 35.5
PGSC0003DMG400010828 Solanum tuberosum HOM05D007556 ORTHO05D002252 5.1e-06 55.8 77 42.9
MD10G1078100 Malus domestica HOM05D007227 ORTHO05D002252 6.7e-06 55.5 88 42.0
Hund00291 Selenicereus undatus HOM05D013587 ORTHO05D002252 6.7e-06 55.5 90 36.7
ClCG11G004490 Citrullus lanatus HOM05D007227 ORTHO05D002252 8.7e-06 55.1 88 35.2
Lj3g0002713 Lotus japonicus HOM05D007227 ORTHO05D002252 8.7e-06 55.1 114 32.5
LjContig00081g0025580 Lotus japonicus HOM05D007227 ORTHO05D002252 8.7e-06 55.1 107 32.7
Sc18g0004580 Simmondsia chinensis HOM05D007556 ORTHO05D002252 8.7e-06 55.1 110 31.8
TWI31G0501 Tripterygium wilfordii HOM05D007227 ORTHO05D002252 8.7e-06 55.1 77 40.3


User provided reference genes

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