Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 0.0e+00 1097.8 567 100.0
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 0.0e+00 1080.5 567 98.8
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 4.0e-299 1030.8 568 94.2
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.3e-252 876.3 569 79.6
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 4.9e-241 837.8 571 75.3
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.9e-240 835.9 566 75.8
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 9.3e-240 833.6 555 75.1
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 3.5e-239 831.6 566 75.6
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 5.6e-237 824.3 572 72.6
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.6e-236 822.8 567 73.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 1.8e-235 819.3 566 74.2
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 2.4e-235 818.9 553 75.8
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 2.0e-234 815.8 559 74.6
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.6e-234 815.5 566 73.9
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 2.6e-234 815.5 556 75.2
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.4e-234 815.1 566 73.7
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.9e-232 809.3 574 72.5
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 4.2e-232 808.1 567 72.5
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 6.0e-231 804.3 573 71.4
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 1.3e-230 803.1 567 71.1
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.9e-229 799.3 518 75.9
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 5.7e-229 797.7 574 72.5
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.3e-228 796.6 572 71.0
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.3e-228 796.6 560 71.8
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 5.3e-227 791.2 555 72.4
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 6.9e-227 790.8 572 69.8
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 6.9e-227 790.8 552 71.9
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.2e-226 790.0 572 69.8
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 1.2e-226 790.0 567 73.4
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.5e-226 789.6 571 71.5
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 2.0e-226 789.3 546 73.1
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 7.7e-226 787.3 567 69.5
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 2.9e-225 785.4 509 76.6
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 8.5e-225 783.9 569 70.3
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.4e-224 783.1 553 72.5
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 5.5e-224 781.2 519 75.0
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 9.4e-224 780.4 566 69.3
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.1e-223 779.2 561 69.7
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 2.3e-222 775.8 571 70.8
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 3.9e-222 775.0 570 69.3
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 6.7e-222 774.2 468 79.9
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.8e-222 773.9 552 71.2
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 2.0e-221 772.7 548 70.6
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 2.5e-221 772.3 492 76.0
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 2.5e-221 772.3 548 70.4
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 4.3e-221 771.5 551 71.0
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 4.3e-221 771.5 559 69.1
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.3e-220 770.0 544 69.7
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 2.2e-220 769.2 551 71.0
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.7e-220 768.5 551 70.6
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.1e-219 766.9 486 78.0
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 3.1e-219 765.4 542 70.3
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 4.1e-219 765.0 556 70.1
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 9.1e-219 763.8 552 70.7
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.2e-218 763.5 564 69.7
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.2e-218 763.5 550 70.4
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 3.4e-218 761.9 530 72.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.7e-217 759.6 482 77.4
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.7e-217 759.6 546 70.5
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 6.5e-217 757.7 452 80.1
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 6.5e-217 757.7 535 71.0
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 1.1e-216 756.9 489 74.4
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.1e-216 756.9 524 71.9
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.9e-216 756.1 535 70.8
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 1.9e-216 756.1 533 72.2
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.9e-216 756.1 547 70.6
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.5e-216 755.7 548 69.3
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 2.5e-216 755.7 564 69.1
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 3.2e-216 755.4 535 70.8
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.2e-216 755.4 564 68.3
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 4.2e-216 755.0 535 72.3
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.7e-215 752.3 528 71.2
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 7.9e-215 750.7 550 68.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 7.9e-215 750.7 514 75.9
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 1.4e-214 750.0 537 71.1
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 3.9e-214 748.4 520 72.7
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 5.7e-213 744.6 541 69.1
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 7.4e-213 744.2 454 78.4
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 2.2e-212 742.7 454 76.4
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.8e-212 742.3 499 73.1
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 3.7e-212 741.9 470 76.6
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 3.7e-212 741.9 481 76.3
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.8e-212 741.5 562 68.1
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 1.8e-211 739.6 540 69.4
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 3.5e-210 735.3 546 69.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.9e-208 729.6 558 67.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 5.5e-208 728.0 460 76.5
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 1.2e-207 726.9 459 74.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 8.0e-207 724.2 659 58.6
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.8e-206 723.0 454 75.6
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 8.8e-206 720.7 539 67.3
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 7.4e-205 717.6 459 73.6
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.7e-204 716.5 428 78.5
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.8e-204 715.7 515 70.5
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 3.7e-204 715.3 499 70.9
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.8e-204 714.9 516 69.4
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 3.2e-192 675.6 569 65.7
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.3e-182 642.9 372 82.5
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.3e-182 642.9 514 62.3
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.7e-178 629.4 418 73.4
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.9e-164 582.0 386 75.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.3e-158 563.1 434 61.5
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.5e-157 560.5 439 60.4
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.2e-155 552.7 406 69.7
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.1e-150 537.7 381 70.6
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 8.9e-150 534.6 437 58.4
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 8.4e-140 501.5 448 55.1
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 8.2e-119 431.8 491 47.5
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 8.7e-113 411.8 561 46.2
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 4.3e-112 409.5 491 45.2
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.4e-109 399.8 449 49.4
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.0e-108 398.3 530 44.9
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.0e-108 398.3 446 49.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.4e-105 387.9 477 44.2
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 4.3e-104 382.9 255 74.9
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.4e-104 382.1 572 44.6
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 3.6e-98 363.2 526 43.9
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 2.6e-96 357.1 562 43.4
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 5.5e-83 312.8 176 83.5
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.4e-81 308.1 481 38.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.7e-74 283.9 169 78.1
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.9e-54 218.0 201 62.2
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 3.7e-47 193.7 162 63.6
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 4.1e-38 163.7 138 60.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 9.2e-38 162.5 131 64.1
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.2e-30 137.1 86 77.9
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 3.9e-28 130.6 105 60.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.6e-24 117.9 125 47.2
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.9e-22 111.7 105 60.0
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.3e-18 99.0 58 82.8
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 9.3e-14 82.8 126 43.7
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 2.3e-12 78.2 135 45.9
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 6.7e-12 76.6 137 39.4
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 4.3e-11 73.9 126 42.9
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 2.0e-08 65.1 131 43.5
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.4e-06 58.9 38 71.1


User provided reference genes

Program Settings