Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 4.1e-254 880.9 462 100.0
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 2.5e-227 792.0 462 89.6
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 3.3e-219 765.0 471 85.4
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 3.7e-194 681.8 468 77.1
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 5.0e-183 644.8 469 71.0
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 2.7e-181 639.0 468 72.2
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 1.5e-179 633.3 465 71.2
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 2.6e-179 632.5 469 71.6
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 4.4e-179 631.7 468 72.0
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 3.7e-178 628.6 470 72.1
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 3.7e-178 628.6 470 72.1
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 8.3e-178 627.5 466 70.2
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.4e-177 626.7 459 72.3
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 2.4e-177 625.9 462 69.7
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 2.0e-176 622.9 472 70.6
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 5.9e-176 621.3 462 69.5
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 3.8e-175 618.6 462 70.6
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 4.2e-174 615.1 505 66.5
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 8.0e-173 610.9 465 68.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 1.4e-172 610.1 471 67.1
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.8e-172 609.8 472 69.7
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.6e-171 605.9 466 68.5
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 5.7e-171 604.7 471 67.7
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.3e-170 601.3 463 69.5
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 8.3e-170 600.9 472 65.9
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 1.1e-169 600.5 460 68.7
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.4e-169 600.1 456 68.4
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.4e-169 599.4 463 69.3
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 4.1e-169 598.6 456 68.4
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.1e-169 598.6 463 69.1
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 7.0e-169 597.8 462 67.7
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.6e-168 596.7 456 68.2
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 1.6e-168 596.7 467 66.6
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 5.0e-167 591.7 454 67.6
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 4.3e-166 588.6 464 66.6
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 9.5e-166 587.4 463 66.1
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 2.1e-165 586.3 465 66.2
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.8e-164 583.2 463 65.4
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 3.0e-164 582.4 462 65.8
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 3.0e-164 582.4 462 66.0
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 3.0e-164 582.4 452 67.5
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 4.0e-164 582.0 460 66.5
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 2.6e-163 579.3 460 65.7
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.2e-162 576.2 501 63.1
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 3.7e-162 575.5 502 62.7
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 8.3e-162 574.3 463 65.0
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 8.3e-162 574.3 491 64.0
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 2.4e-161 572.8 488 64.8
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 3.2e-161 572.4 467 66.8
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 7.0e-161 571.2 486 62.8
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 1.2e-160 570.5 465 65.8
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 2.7e-160 569.3 467 66.4
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 3.5e-160 568.9 463 64.1
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 3.5e-160 568.9 456 66.7
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 7.8e-160 567.8 463 64.1
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 3.0e-159 565.8 467 63.6
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 5.0e-159 565.1 472 64.2
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 8.6e-159 564.3 470 63.8
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 1.1e-158 563.9 466 66.1
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 1.5e-158 563.5 465 65.8
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 2.5e-158 562.8 467 64.0
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 4.3e-158 562.0 467 63.8
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 5.6e-158 561.6 458 65.9
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 6.2e-157 558.1 467 64.0
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 1.0e-156 557.4 465 63.0
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 4.0e-156 555.4 464 64.7
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 3.7e-154 548.9 465 63.7
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 4.9e-154 548.5 468 62.8
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 5.4e-153 545.0 462 63.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.0e-152 543.1 466 62.4
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 5.0e-151 538.5 462 62.3
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 8.6e-151 537.7 478 59.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 8.6e-151 537.7 468 63.0
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 4.3e-150 535.4 488 61.7
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 5.6e-150 535.0 466 63.7
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 8.1e-149 531.2 462 62.8
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 8.1e-149 531.2 460 60.9
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.1e-148 530.8 436 64.0
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 8.9e-148 527.7 467 59.5
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.7e-144 516.2 480 57.9
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 2.7e-144 516.2 427 64.9
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 4.6e-144 515.4 414 66.7
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.1e-143 511.9 431 66.1
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 5.8e-139 498.4 424 63.4
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 2.2e-138 496.5 373 68.1
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 9.2e-137 491.1 487 54.0
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 1.6e-136 490.3 472 56.6
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 8.1e-133 478.0 322 77.3
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.1e-132 477.6 477 55.3
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 2.0e-131 473.4 373 66.8
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 5.4e-129 465.3 464 54.3
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 6.0e-128 461.8 364 68.7
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 9.6e-126 454.5 471 53.5
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 2.4e-124 449.9 471 53.5
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.9e-121 440.3 488 50.4
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.3e-119 434.1 332 69.6
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.8e-119 433.7 316 70.9
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 3.3e-118 429.5 462 52.8
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 6.9e-108 395.2 365 58.6
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.7e-106 390.6 348 61.2
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 3.8e-106 389.4 512 48.2
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 7.1e-105 385.2 332 63.9
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 2.1e-104 383.6 320 66.2
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.7e-90 337.4 305 63.9
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.4e-87 327.8 267 65.9
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 3.0e-87 326.6 347 53.0
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 4.5e-83 312.8 220 71.8
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.3e-79 300.4 486 37.0
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.7e-74 284.3 425 40.7
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 3.0e-63 246.9 342 45.9
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 2.9e-58 230.3 490 33.9
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 1.3e-50 204.9 486 33.5
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 7.0e-44 182.6 162 58.6
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 1.0e-42 178.7 203 51.7
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 3.1e-31 140.6 498 26.1
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 2.6e-30 137.5 374 33.7
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 3.3e-25 120.6 434 26.3
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.3e-25 120.6 128 53.1
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 6.2e-24 116.3 84 71.4
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.1e-23 115.5 141 48.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.4e-23 115.2 81 71.6
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 2.4e-23 114.4 81 72.8
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 5.2e-23 113.2 82 73.2
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 5.2e-23 113.2 405 27.2
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.5e-17 95.1 100 53.0
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 1.7e-13 81.6 100 46.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 9.3e-12 75.9 72 50.0
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 7.8e-11 72.8 72 48.6
SEGI_04453 Sequoiadendron giganteum HOM05D006261 ORTHO05D386652 1.2e-06 58.9 51 62.7


User provided reference genes

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