Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G104800 Populus trichocarpa HOM05D008521 ORTHO05D001803 1.2e-62 243.0 125 100.0
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 1.5e-12 76.6 118 34.7
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 8.1e-11 70.9 94 34.0
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 6.8e-10 67.8 106 25.5
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 4.4e-09 65.1 73 39.7
Cpa.g.sc34.129 Carica papaya HOM05D002073 ORTHO05D001803 3.7e-08 62.0 79 40.5
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 3.7e-08 62.0 127 31.5
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.9e-08 61.6 96 35.4
Cpa.g.sc34.128 Carica papaya HOM05D002073 ORTHO05D001803 6.4e-08 61.2 79 40.5
Cpa.g.sc34.130 Carica papaya HOM05D002073 ORTHO05D001803 6.4e-08 61.2 79 40.5
Cpa.g.sc5.35 Carica papaya HOM05D002073 ORTHO05D001803 6.4e-08 61.2 79 40.5
COL.COLO4_04380 Corchorus olitorius HOM05D002073 ORTHO05D001803 6.4e-08 61.2 113 34.5
Duzib022G0002 Durio zibethinus HOM05D002073 ORTHO05D001803 1.1e-07 60.5 118 33.1
Duzib069G0001 Durio zibethinus HOM05D002073 ORTHO05D001803 1.1e-07 60.5 118 33.1
Lj3g0005293 Lotus japonicus HOM05D010700 ORTHO05D012225 1.4e-07 60.1 81 34.6
Cpa.g.sc34.131 Carica papaya HOM05D002073 ORTHO05D001803 1.9e-07 59.7 73 42.5
COL.COLO4_08463 Corchorus olitorius HOM05D002073 ORTHO05D001803 1.9e-07 59.7 113 33.6
Gohir.A01G064100 Gossypium hirsutum HOM05D002073 ORTHO05D001803 1.9e-07 59.7 78 35.9
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 1.9e-07 59.7 95 31.6
Duzib022G0001 Durio zibethinus HOM05D002073 ORTHO05D001803 2.4e-07 59.3 117 33.3
Glyma.19G071100 Glycine max HOM05D008402 ORTHO05D000988 4.1e-07 58.5 77 36.4
Gohir.D01G051000 Gossypium hirsutum HOM05D002073 ORTHO05D001803 5.4e-07 58.2 116 33.6
Medtr8g011740 Medicago truncatula HOM05D008402 ORTHO05D000988 5.4e-07 58.2 127 29.1
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 5.4e-07 58.2 108 27.8
RcHm_v2.0_Chr5g0053201 Rosa chinensis HOM05D008521 ORTHO05D000988 7.1e-07 57.8 87 34.5
RcHm_v2.0_Chr5g0053221 Rosa chinensis HOM05D008521 ORTHO05D000988 7.1e-07 57.8 87 34.5
Gorai.002G071100 Gossypium raimondii HOM05D002073 ORTHO05D001803 9.2e-07 57.4 116 33.6
COL.COLO4_04381 Corchorus olitorius HOM05D002073 ORTHO05D001803 1.6e-06 56.6 113 33.6
Nitab4.5_0008779g0010 Nicotiana tabacum HOM05D011392 ORTHO05D001803 1.6e-06 56.6 88 35.2
RcHm_v2.0_Chr5g0046951 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
RcHm_v2.0_Chr5g0046961 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
RcHm_v2.0_Chr5g0046971 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
RcHm_v2.0_Chr5g0069271 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
RcHm_v2.0_Chr5g0069281 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
RcHm_v2.0_Chr5g0069291 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
RcHm_v2.0_Chr5g0069301 Rosa chinensis HOM05D008521 ORTHO05D000988 1.6e-06 56.6 87 33.3
COL.COLO4_33507 Corchorus olitorius HOM05D002073 ORTHO05D001803 2.1e-06 56.2 124 33.1
Rhsim01G0015900 Rhododendron simsii HOM05D010700 ORTHO05D012225 2.1e-06 56.2 103 26.2
Cpa.g.sc75.89 Carica papaya HOM05D002073 ORTHO05D001803 2.7e-06 55.8 112 32.1
COL.COLO4_33508 Corchorus olitorius HOM05D002073 ORTHO05D001803 2.7e-06 55.8 75 40.0
RcHm_v2.0_Chr5g0053121 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053141 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053151 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053161 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053171 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053181 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053191 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053231 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053241 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053251 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
RcHm_v2.0_Chr5g0053271 Rosa chinensis HOM05D008521 ORTHO05D000988 2.7e-06 55.8 87 33.3
THA.LOC104803172 Tarenaya hassleriana HOM05D001614 ORTHO05D000988 2.7e-06 55.8 73 35.6
VMungo0647G1641 Vigna mungo HOM05D008402 ORTHO05D000988 2.7e-06 55.8 76 32.9
THA.LOC104803177 Tarenaya hassleriana HOM05D001614 ORTHO05D000988 3.5e-06 55.5 112 31.2
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 4.6e-06 55.1 94 28.7
COL.COLO4_04336 Corchorus olitorius HOM05D002073 ORTHO05D001803 4.6e-06 55.1 75 40.0
Eucgr.E01746 Eucalyptus grandis HOM05D067861 ORTHO05D012225 4.6e-06 55.1 74 37.8
THA.LOC104803173 Tarenaya hassleriana HOM05D001614 ORTHO05D000988 4.6e-06 55.1 112 32.1
COL.COLO4_03905 Corchorus olitorius HOM05D002073 ORTHO05D001803 6.0e-06 54.7 75 40.0
COL.COLO4_33513 Corchorus olitorius HOM05D002073 ORTHO05D001803 6.0e-06 54.7 112 29.5
Thecc.07G086700 Theobroma cacao HOM05D002073 ORTHO05D001803 6.0e-06 54.7 83 34.9
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 7.8e-06 54.3 85 30.6
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 7.8e-06 54.3 85 32.9


User provided reference genes

Program Settings