Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 3976.4 1986 100.0
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 3585.8 2008 90.2
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 3340.8 1993 84.6
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 3075.8 2012 79.5
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 2577.7 2010 65.9
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 2428.7 2045 62.4
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 2371.7 2004 62.3
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 2371.3 2013 61.6
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 2360.1 2013 61.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 2333.9 2003 61.3
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2325.4 2011 60.6
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2325.4 2006 60.1
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 2310.0 2000 61.0
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 2298.5 2006 60.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 2293.1 2006 60.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2292.7 1981 62.0
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 2278.8 2003 61.2
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 2273.4 1995 59.1
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2269.2 2024 58.8
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 2263.0 1999 60.7
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2254.6 2004 59.3
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 2241.1 2015 58.5
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2237.2 2038 58.1
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 2227.6 2001 59.0
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 2205.3 2034 58.2
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 2175.2 2036 56.7
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2172.1 2020 58.6
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2166.7 2027 58.3
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 2103.2 2018 57.6
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 2093.2 2030 55.6
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 2045.8 2030 54.0
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 2011.9 2010 53.6
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1990.7 2034 53.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1988.4 1998 53.8
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1984.1 2006 53.3
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1974.9 1999 52.9
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1958.3 1997 53.5
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1954.5 2000 53.2
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1953.3 2002 52.8
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1942.2 2005 52.6
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1916.0 2007 51.7
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1913.7 2038 52.3
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1913.3 2001 52.0
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1911.7 2007 51.5
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1911.7 2006 51.8
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1910.6 2005 52.2
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1907.9 2056 50.9
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1894.8 2004 51.9
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1869.4 1994 51.6
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1856.6 2002 51.0
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1821.2 2009 51.2
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1805.4 2035 49.4
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1793.1 1936 51.0
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1788.1 2007 50.1
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1780.0 2047 49.7
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1768.8 2027 49.2
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1767.3 1723 56.1
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 1764.2 2015 48.7
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1760.0 2015 48.9
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 1760.0 2019 48.6
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 1759.6 2000 49.6
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 1754.2 2024 48.5
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1753.8 1973 50.6
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1752.3 2016 49.0
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1748.8 2017 48.9
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1748.8 1725 56.0
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1744.6 2010 49.1
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1743.8 2006 49.2
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1741.5 2018 48.7
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1738.4 2008 49.5
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1730.3 2022 49.1
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1714.9 2068 48.0
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1703.3 2043 47.4
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1689.1 2014 48.4
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1687.9 1940 48.6
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1686.0 2015 48.2
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1685.6 2015 48.2
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1684.5 2015 48.1
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1684.1 2015 48.3
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1676.8 2019 46.9
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1663.7 1932 48.1
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 1613.2 1944 47.1
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1600.5 2043 46.6
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1595.5 1459 58.3
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1595.1 2001 46.4
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1591.2 1459 58.3
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1583.2 2035 46.2
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1575.1 1941 46.7
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1574.3 2146 44.2
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1568.9 1787 48.8
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1563.1 1989 45.4
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 0.0e+00 1500.7 2006 44.4
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1346.3 1744 44.6
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1334.7 2099 41.3
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 0.0e+00 1326.2 1198 58.6
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1186.0 1693 42.1
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 0.0e+00 1161.7 2020 36.3
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 3.5e-310 1069.3 2129 35.1
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 7.0e-274 948.7 1699 36.7
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 8.0e-270 935.3 1477 38.0
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 3.1e-237 827.0 2193 31.1
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 1.3e-219 768.5 1994 31.6
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 8.4e-219 765.8 679 61.1
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 3.9e-208 730.3 2115 30.1
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 4.2e-194 683.7 1198 36.6
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.4e-173 615.5 1716 28.7
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 1.3e-158 565.8 1914 27.6
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 2.3e-144 518.5 489 57.5
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.2e-143 516.2 1126 33.4
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.7e-132 478.4 405 59.8
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.5e-124 451.4 442 54.5
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.2e-121 443.0 341 68.3
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 9.2e-117 426.8 273 79.9
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.0e-115 423.3 385 55.8
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 9.2e-109 400.2 360 59.4
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 2.3e-99 369.0 271 67.9
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 3.0e-91 342.0 521 42.4
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 1.6e-76 293.1 199 72.9
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 4.3e-66 258.5 375 43.2
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 9.7e-66 257.3 264 54.5
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 4.8e-57 228.4 177 62.7
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.2e-55 223.8 217 55.3
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 8.5e-54 217.6 189 58.7
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 4.4e-42 178.7 518 30.5
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 7.7e-39 167.9 314 38.2
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 2.1e-36 159.8 180 53.9
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 2.5e-29 136.3 83 74.7
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 5.5e-29 135.2 986 22.2
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 6.3e-25 121.7 217 35.5
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 5.4e-24 118.6 389 23.9
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.5e-23 115.5 282 30.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 8.6e-22 111.3 67 77.6
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 1.5e-21 110.5 67 77.6
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 1.2e-20 107.5 68 72.1
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 8.0e-20 104.8 66 77.3
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.0e-19 104.4 68 76.5
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.5e-18 100.5 62 74.2
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 1.7e-17 97.1 107 51.4
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-16 93.2 100 45.0
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 2.3e-14 86.7 56 76.8
TPR.G30833 Trifolium pratense HOM05D005412 ORTHO05D006096 4.3e-13 82.4 57 78.9
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 5.6e-13 82.0 49 75.5
CBR_g37896 Chara braunii HOM05D012618 ORTHO05D000497 3.6e-12 79.3 127 38.6
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 9.2e-08 64.7 46 63.0
Migut.B00337 Erythranthe guttata HOM05D005412 ORTHO05D006096 3.5e-07 62.8 69 50.7


User provided reference genes

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