Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G101600 Populus trichocarpa HOM05D004900 ORTHO05D006392 1.0e-187 659.8 319 100.0
Sabra09G0077500 Salix brachista HOM05D004900 ORTHO05D006392 5.9e-151 537.7 358 77.9
Potri.004G140800 Populus trichocarpa HOM05D004900 ORTHO05D006392 2.9e-145 518.8 362 76.5
Sabra04G0092700 Salix brachista HOM05D004900 ORTHO05D006392 5.0e-142 508.1 362 75.1
Manes.10G071700 Manihot esculenta HOM05D004900 ORTHO05D006392 3.9e-134 481.9 362 71.3
TWI31G0729 Tripterygium wilfordii HOM05D004900 ORTHO05D006392 9.5e-133 477.2 359 70.8
CANSAT25G2295 Cannabis sativa HOM05D004900 ORTHO05D006392 4.7e-132 474.9 361 70.6
Cpa.g.sc62.8 Carica papaya HOM05D004900 ORTHO05D006392 8.1e-132 474.2 360 70.8
Atru.chr5.2694 Acer truncatum HOM05D004900 ORTHO05D006392 1.8e-131 473.0 360 70.3
Eucgr.I01148 Eucalyptus grandis HOM05D004900 ORTHO05D006392 1.8e-131 473.0 363 69.4
COL.COLO4_32650 Corchorus olitorius HOM05D004900 ORTHO05D006392 6.8e-131 471.1 359 68.8
Duzib248G0136 Durio zibethinus HOM05D004900 ORTHO05D006392 2.6e-130 469.2 358 69.3
CiPaw.06G172200 Carya illinoinensis HOM05D004900 ORTHO05D006392 5.8e-130 468.0 359 69.4
Ciclev10028067m.g Citrus clementina HOM05D004900 ORTHO05D006392 5.8e-130 468.0 365 69.3
Thecc.02G101200 Theobroma cacao HOM05D004900 ORTHO05D006392 7.6e-130 467.6 358 69.0
THA.LOC104819578 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 6.4e-129 464.5 360 69.2
Cfa004525 Carpinus fangiana HOM05D004900 ORTHO05D006392 1.9e-128 463.0 359 69.4
Oeu009747.1 Olea europaea HOM05D004900 ORTHO05D006392 4.1e-128 461.8 363 67.8
CSS0038145 Camellia sinensis var. sinensis HOM05D004900 ORTHO05D006392 7.1e-128 461.1 367 67.8
Prupe.8G126000 Prunus persica HOM05D004900 ORTHO05D006392 7.1e-128 461.1 357 69.2
SGA_v2.0_scaffold90G27642 Striga asiatica HOM05D004900 ORTHO05D006392 1.6e-127 459.9 364 65.7
THA.LOC104807271 Tarenaya hassleriana HOM05D004900 ORTHO05D006392 2.1e-127 459.5 372 66.4
Dinv42160 Davidia involucrata HOM05D004900 ORTHO05D006392 2.7e-127 459.1 363 68.6
Migut.B00351 Erythranthe guttata HOM05D004900 ORTHO05D006392 2.7e-127 459.1 365 67.7
DCAR_029058 Daucus carota HOM05D004900 ORTHO05D006392 4.6e-127 458.4 366 66.1
Hma1.2p1_0370F.1_g137745 Hydrangea macrophylla HOM05D004900 ORTHO05D006392 4.6e-127 458.4 364 68.1
MD05G1081500 Malus domestica HOM05D004900 ORTHO05D006392 4.6e-127 458.4 353 69.4
Cc02_g28520 Coffea canephora HOM05D004900 ORTHO05D006392 6.0e-127 458.0 364 67.6
Thhalv10022613m.g Eutrema salsugineum HOM05D004900 ORTHO05D006392 7.8e-127 457.6 361 67.6
PGR142G1087 Punica granatum HOM05D004900 ORTHO05D006392 7.8e-127 457.6 376 67.3
MSTRG.16738 Avicennia marina HOM05D004900 ORTHO05D006392 1.7e-126 456.4 362 67.7
Nitab4.5_0018347g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.7e-126 456.4 362 66.3
FvH4_2g05960 Fragaria vesca HOM05D004900 ORTHO05D006392 3.0e-126 455.7 347 69.5
RcHm_v2.0_Chr6g0257431 Rosa chinensis HOM05D004900 ORTHO05D006392 3.9e-126 455.3 357 68.9
Sopen01g050850 Solanum pennellii HOM05D004900 ORTHO05D006392 6.6e-126 454.5 362 67.1
BraA09t36723Z Brassica rapa HOM05D004900 ORTHO05D006392 1.1e-125 453.8 355 68.2
Gohir.A13G040600 Gossypium hirsutum HOM05D004900 ORTHO05D006392 1.1e-125 453.8 362 66.9
Solyc01g108630.3 Solanum lycopersicum HOM05D004900 ORTHO05D006392 1.1e-125 453.8 362 67.1
BcaC04g23043 Brassica carinata HOM05D004900 ORTHO05D006392 1.5e-125 453.4 355 67.9
C09p12780 Brassica napus HOM05D004900 ORTHO05D006392 1.5e-125 453.4 355 67.9
BolC9t54165H Brassica oleracea HOM05D004900 ORTHO05D006392 1.5e-125 453.4 355 67.9
Lalb_Chr05g0219191 Lupinus albus HOM05D004900 ORTHO05D006392 1.5e-125 453.4 359 67.7
A09p10810 Brassica napus HOM05D004900 ORTHO05D006392 1.9e-125 453.0 355 68.2
Nn1g04853 Nelumbo nucifera HOM05D004900 ORTHO05D006392 1.9e-125 453.0 369 66.4
PGSC0003DMG400025823 Solanum tuberosum HOM05D004900 ORTHO05D006392 1.9e-125 453.0 362 67.1
FAN24G3555 Fragaria x ananassa HOM05D004900 ORTHO05D006392 2.5e-125 452.6 347 69.2
PGSC0003DMG400008262 Solanum tuberosum HOM05D004900 ORTHO05D006392 2.5e-125 452.6 363 66.4
Carub.0003s2939 Capsella rubella HOM05D004900 ORTHO05D006392 3.3e-125 452.2 359 67.1
CARHR105960 Cardamine hirsuta HOM05D004900 ORTHO05D006392 3.3e-125 452.2 359 67.1
Gorai.013G044200 Gossypium raimondii HOM05D004900 ORTHO05D006392 3.3e-125 452.2 362 66.6
Medtr4g086020 Medicago truncatula HOM05D004900 ORTHO05D006392 4.3e-125 451.8 369 66.1
Rhsim11G0165400 Rhododendron simsii HOM05D004900 ORTHO05D006392 5.6e-125 451.4 360 67.5
AT2G15620 Arabidopsis thaliana HOM05D004900 ORTHO05D006392 7.3e-125 451.1 361 66.8
BcaC06g36073 Brassica carinata HOM05D004900 ORTHO05D006392 7.3e-125 451.1 361 67.0
A07p05130 Brassica napus HOM05D004900 ORTHO05D006392 7.3e-125 451.1 362 66.9
Peaxi162Scf00003g01630 Petunia axillaris HOM05D004900 ORTHO05D006392 7.3e-125 451.1 362 66.6
AL3G47370 Arabidopsis lyrata HOM05D004900 ORTHO05D006392 9.6e-125 450.7 363 67.2
BcaB07g31785 Brassica carinata HOM05D004900 ORTHO05D006392 9.6e-125 450.7 355 66.8
BraA07t28307Z Brassica rapa HOM05D004900 ORTHO05D006392 9.6e-125 450.7 362 66.9
Nitab4.5_0005249g0010 Nicotiana tabacum HOM05D004900 ORTHO05D006392 9.6e-125 450.7 367 65.4
arahy.Tifrunner.gnm1.ann1.X7K798 Arachis hypogaea HOM05D004900 ORTHO05D006392 1.2e-124 450.3 370 66.2
Sp3g28890 Schrenkiella parvula HOM05D004900 ORTHO05D006392 1.2e-124 450.3 360 67.5
Gohir.D13G039300 Gossypium hirsutum HOM05D004900 ORTHO05D006392 1.6e-124 449.9 362 66.6
arahy.Tifrunner.gnm1.ann1.AXQD4Y Arachis hypogaea HOM05D004900 ORTHO05D006392 2.8e-124 449.1 370 65.9
CAN.G663.4 Capsicum annuum HOM05D004900 ORTHO05D006392 2.8e-124 449.1 365 66.0
FAN27G2168 Fragaria x ananassa HOM05D004900 ORTHO05D006392 3.6e-124 448.7 347 68.3
ECA236G3626 Erigeron canadensis HOM05D004900 ORTHO05D006392 4.7e-124 448.4 348 67.5
Glyma.07G212800 Glycine max HOM05D004900 ORTHO05D006392 6.2e-124 448.0 361 66.8
C07p08190 Brassica napus HOM05D004900 ORTHO05D006392 8.1e-124 447.6 358 67.0
BolC7t41235H Brassica oleracea HOM05D004900 ORTHO05D006392 8.1e-124 447.6 358 67.0
Sopen10g022530 Solanum pennellii HOM05D004900 ORTHO05D006392 8.1e-124 447.6 363 65.6
Aa31LG8G13280 Aethionema arabicum HOM05D004900 ORTHO05D006392 1.1e-123 447.2 361 65.7
Ca_18688_v3 Cicer arietinum L. HOM05D004900 ORTHO05D006392 1.1e-123 447.2 364 66.8
Nitab4.5_0000876g0100 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.1e-123 447.2 364 65.7
ClCG05G009960 Citrullus lanatus HOM05D004900 ORTHO05D006392 2.4e-123 446.0 358 67.0
QL11p035712 Quercus lobata HOM05D004900 ORTHO05D006392 2.4e-123 446.0 357 66.7
VMungo0251G0630 Vigna mungo HOM05D004900 ORTHO05D006392 4.0e-123 445.3 360 66.9
CAN.G149.20 Capsicum annuum HOM05D004900 ORTHO05D006392 6.8e-123 444.5 320 70.9
Glyma.02G132100 Glycine max HOM05D004900 ORTHO05D006392 8.9e-123 444.1 371 65.8
Phvul.003G292100 Phaseolus vulgaris HOM05D004900 ORTHO05D006392 8.9e-123 444.1 360 66.7
Lj5A209T83 Lonicera japonica HOM05D004900 ORTHO05D006392 1.5e-122 443.4 359 65.5
Lj4g0002152 Lotus japonicus HOM05D004900 ORTHO05D006392 2.0e-122 443.0 353 68.0
TPR.G25435 Trifolium pratense HOM05D004900 ORTHO05D006392 2.0e-122 443.0 370 65.4
Solyc10g050890.2 Solanum lycopersicum HOM05D004900 ORTHO05D006392 3.4e-122 442.2 363 65.0
CsaV3_3G018610 Cucumis sativus L. HOM05D004900 ORTHO05D006392 4.4e-122 441.8 358 66.2
Sc18g0004090 Simmondsia chinensis HOM05D004900 ORTHO05D006392 1.7e-121 439.9 363 64.2
MELO3C019505.2 Cucumis melo HOM05D004900 ORTHO05D006392 2.2e-121 439.5 358 65.6
Sed0000080 Sechium edule HOM05D004900 ORTHO05D006392 4.9e-121 438.3 361 67.0
Psat7g123960 Pisum sativum HOM05D004900 ORTHO05D006392 6.4e-121 438.0 364 65.4
HanXRQChr04g0128191 Helianthus annuus HOM05D004900 ORTHO05D006392 1.1e-120 437.2 362 63.8
vmacro02045 Vaccinium macrocarpon HOM05D004900 ORTHO05D006392 1.1e-120 437.2 399 61.4
unitig_0.g85 Utricularia gibba HOM05D004900 ORTHO05D006392 1.4e-120 436.8 327 69.1
CAN.G1041.10 Capsicum annuum HOM05D004900 ORTHO05D006392 1.9e-120 436.4 320 70.3
HanXRQChr09g0259251 Helianthus annuus HOM05D004900 ORTHO05D006392 3.2e-120 435.6 368 63.3
PSO210G5341 Papaver somniferum HOM05D004900 ORTHO05D006392 2.1e-119 433.0 320 68.8
AUR62034289 Chenopodium quinoa HOM05D004900 ORTHO05D006392 2.7e-119 432.6 323 68.7
Hund02212 Selenicereus undatus HOM05D004900 ORTHO05D006392 2.7e-119 432.6 350 65.1
AUR62029383 Chenopodium quinoa HOM05D004900 ORTHO05D006392 1.0e-118 430.6 323 68.4
EL10Ac4g08164 Beta vulgaris HOM05D004900 ORTHO05D006392 1.7e-118 429.9 320 68.4
PSO170G4054 Papaver somniferum HOM05D004900 ORTHO05D006392 1.7e-118 429.9 320 68.1
ATR0009G021 Amborella trichopoda HOM05D004900 ORTHO05D006392 6.6e-118 427.9 321 68.5
Ah.04g164910 Amaranthus hybridus HOM05D004900 ORTHO05D006392 3.3e-117 425.6 356 63.8
Hund22922 Selenicereus undatus HOM05D004900 ORTHO05D006392 2.4e-115 419.5 339 65.2
Os01g0357100 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 4.0e-115 418.7 369 61.8
SEGI_39412 Sequoiadendron giganteum HOM05D004900 ORTHO05D006392 4.0e-115 418.7 320 66.6
Zm00001eb193660 Zea mays HOM05D004900 ORTHO05D006392 1.2e-114 417.2 368 62.2
Aqoxy6G01317 Aquilegia oxysepala HOM05D004900 ORTHO05D006392 4.4e-114 415.2 355 63.7
SMO200G0071 Selaginella moellendorffii HOM05D004900 ORTHO05D006392 1.7e-113 413.3 319 66.5
Zm00001eb255880 Zea mays HOM05D004900 ORTHO05D006392 7.1e-112 407.9 363 60.6
Peaxi162Scf00016g01734 Petunia axillaris HOM05D004900 ORTHO05D006392 7.9e-111 404.4 363 61.7
Pp3c27_6610 Physcomitrium patens HOM05D004900 ORTHO05D006392 1.7e-110 403.3 336 61.6
Haze_10084 Corylus avellana HOM05D004900 ORTHO05D006392 4.3e-109 398.7 359 62.4
CDE09G0425 Ceratophyllum demersum HOM05D004900 ORTHO05D006392 7.3e-109 397.9 325 63.4
Pp3c16_15880 Physcomitrium patens HOM05D004900 ORTHO05D006392 9.0e-107 391.0 323 63.5
MBI03_g13466_MAGBIO Magnolia biondii HOM05D004900 ORTHO05D006392 2.0e-106 389.8 359 60.7
HPP92_004227 Vanilla planifolia HOM05D004900 ORTHO05D006392 2.0e-106 389.8 338 60.4
Actinidia00438 Actinidia chinensis HOM05D004900 ORTHO05D006392 9.9e-106 387.5 281 71.9
HPP92_004223 Vanilla planifolia HOM05D004900 ORTHO05D006392 1.7e-105 386.7 338 60.1
Lsat_1_v5_gn_7_86981 Lactuca sativa HOM05D004900 ORTHO05D006392 2.4e-104 382.9 281 70.1
AagrBONN_evm.TU.Sc2ySwM_117.307 Anthoceros agrestis HOM05D004900 ORTHO05D006392 4.2e-104 382.1 324 63.0
AagrBONN_evm.TU.Sc2ySwM_117.432 Anthoceros agrestis HOM05D004900 ORTHO05D006392 4.2e-104 382.1 319 63.0
Mapoly0183s0004 Marchantia polymorpha HOM05D004900 ORTHO05D006392 1.2e-103 380.6 320 62.2
CBR_g49893 Chara braunii HOM05D004900 ORTHO05D006392 1.3e-97 360.5 322 59.6
GSVIVG01031737001 Vitis vinifera HOM05D004900 ORTHO05D006392 3.2e-96 355.9 267 68.9
Ah.06g184040 Amaranthus hybridus HOM05D004900 ORTHO05D006392 4.6e-95 352.1 320 60.0
Os02g0765900 Oryza sativa ssp. japonica HOM05D004900 ORTHO05D006392 3.0e-94 349.4 270 67.8
CiPaw.05G006800 Carya illinoinensis HOM05D004900 ORTHO05D006392 4.3e-93 345.5 335 59.4
MCO01G555 Micromonas commoda HOM05D004900 ORTHO05D006392 2.8e-76 289.7 309 49.5
BcaC04g23041 Brassica carinata HOM05D004900 ORTHO05D006392 6.3e-76 288.5 222 67.6
TAR628G1452 Trochodendron aralioides HOM05D004900 ORTHO05D006392 6.3e-68 261.9 194 68.6
BcaB03g16309 Brassica carinata HOM05D004900 ORTHO05D006392 2.9e-57 226.5 163 68.7
Cre09.g410750 Chlamydomonas reinhardtii HOM05D004900 ORTHO05D006392 1.3e-44 184.5 324 38.6
TAR628G1596 Trochodendron aralioides HOM05D004900 ORTHO05D006392 1.6e-42 177.6 192 55.2
PRCOL_00002965 Prasinoderma coloniale HOM05D004900 ORTHO05D001484 5.9e-42 175.6 278 39.2
PRCOL_00004550 Prasinoderma coloniale HOM05D004900 ORTHO05D006392 2.5e-40 170.2 288 37.5
TAR628G0481 Trochodendron aralioides HOM05D004900 ORTHO05D006392 4.9e-36 156.0 97 78.4
Nitab4.5_0001401g0020 Nicotiana tabacum HOM05D004900 ORTHO05D006392 4.4e-21 106.3 85 63.5
Nitab4.5_0001401g0030 Nicotiana tabacum HOM05D004900 ORTHO05D006392 1.9e-19 100.9 78 66.7
Actinidia12947 Actinidia chinensis HOM05D004900 ORTHO05D030937 7.8e-18 95.5 69 72.5
BolC3t18246H Brassica oleracea HOM05D004900 ORTHO05D027847 5.4e-11 72.8 76 55.3
VMungo0647G1691 Vigna mungo HOM05D004900 ORTHO05D030937 9.2e-11 72.0 51 70.6
Pp3c6_26360 Physcomitrium patens HOM05D004900 ORTHO05D006392 1.6e-10 71.2 61 59.0
Lsat_1_v5_gn_7_86961 Lactuca sativa HOM05D004900 ORTHO05D006392 1.1e-08 65.1 76 51.3
DCAR_029059 Daucus carota HOM05D003465 ORTHO05D004034 1.2e-07 61.6 76 48.7


User provided reference genes

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