Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 4.0e-142 508.1 255 100.0
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 4.8e-135 484.6 255 94.9
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.2e-130 469.9 255 93.3
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.3e-127 459.9 255 90.2
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.6e-127 459.5 255 90.6
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 2.8e-127 458.8 255 90.6
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.8e-127 458.0 255 89.4
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 6.2e-127 457.6 255 90.2
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.4e-126 456.4 252 90.5
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 2.4e-126 455.7 255 89.4
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 2.4e-126 455.7 255 89.4
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 9.0e-126 453.8 256 89.8
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 1.5e-125 453.0 251 90.4
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 2.0e-125 452.6 254 90.6
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 2.0e-125 452.6 255 88.6
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.4e-125 451.8 256 89.5
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 3.4e-125 451.8 254 90.6
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 3.4e-125 451.8 251 90.4
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.3e-124 449.9 255 86.7
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.3e-124 449.9 255 86.7
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.3e-124 449.9 252 87.3
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.7e-124 449.5 252 88.9
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 1.7e-124 449.5 252 86.9
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 3.8e-124 448.4 252 86.9
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 4.9e-124 448.0 254 89.0
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 8.4e-124 447.2 252 88.1
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 8.4e-124 447.2 252 88.1
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 1.1e-123 446.8 255 87.1
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 1.9e-123 446.0 255 86.7
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 2.5e-123 445.7 252 88.1
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.2e-122 443.4 256 84.8
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 1.6e-122 443.0 255 86.3
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 2.1e-122 442.6 255 86.3
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 3.5e-122 441.8 255 86.3
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 3.5e-122 441.8 255 87.5
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 3.5e-122 441.8 255 85.9
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 3.5e-122 441.8 252 86.5
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 4.6e-122 441.4 255 83.5
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.6e-122 441.4 255 84.3
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 4.6e-122 441.4 255 86.3
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 6.1e-122 441.0 255 86.3
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 6.1e-122 441.0 272 83.8
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 6.1e-122 441.0 255 86.3
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 7.9e-122 440.7 255 86.3
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 7.9e-122 440.7 255 84.7
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 7.9e-122 440.7 255 85.5
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 1.0e-121 440.3 255 85.1
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 1.0e-121 440.3 255 85.9
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.0e-121 440.3 256 84.4
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 1.3e-121 439.9 259 85.3
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 1.8e-121 439.5 255 85.5
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 1.8e-121 439.5 255 86.3
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 1.8e-121 439.5 258 85.3
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.8e-121 439.5 259 86.9
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 3.9e-121 438.3 251 85.7
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 6.7e-121 437.6 254 85.4
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 6.7e-121 437.6 258 85.3
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 6.7e-121 437.6 255 85.5
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 8.7e-121 437.2 264 83.3
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 1.1e-120 436.8 255 84.3
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 1.9e-120 436.0 252 84.1
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 3.3e-120 435.3 251 84.5
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 5.7e-120 434.5 251 84.9
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 9.7e-120 433.7 252 84.9
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 2.2e-119 432.6 251 82.5
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 3.7e-119 431.8 280 78.6
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.1e-118 430.3 251 83.3
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 1.1e-118 430.3 251 82.5
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.8e-118 429.5 282 77.7
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.8e-118 429.5 259 83.8
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.4e-118 429.1 255 83.9
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 4.1e-118 428.3 259 81.9
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 6.9e-118 427.6 255 81.2
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 9.0e-118 427.2 257 82.1
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 2.6e-117 425.6 256 84.0
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 2.6e-117 425.6 240 85.4
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 7.7e-117 424.1 256 83.6
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 7.7e-117 424.1 295 73.6
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 2.7e-114 415.6 225 87.6
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 4.6e-114 414.8 250 81.6
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.0e-113 413.7 226 86.7
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.4e-113 413.3 252 79.0
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 3.0e-113 412.1 252 79.0
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 3.0e-113 412.1 252 77.8
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 3.7e-111 405.2 248 82.7
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 2.6e-109 399.1 233 85.0
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 2.6e-109 399.1 233 85.0
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 2.6e-109 399.1 283 75.6
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 2.3e-105 386.0 256 77.3
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 3.9e-105 385.2 222 82.9
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 6.7e-105 384.4 251 80.5
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 2.6e-104 382.5 255 78.4
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 6.3e-103 377.9 251 75.3
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 7.0e-102 374.4 454 49.6
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.5e-101 373.2 251 71.7
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 5.9e-101 371.3 257 77.0
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 7.7e-101 370.9 251 73.3
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 1.1e-99 367.1 210 88.1
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 1.1e-99 367.1 251 71.3
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 3.2e-99 365.5 250 78.0
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 1.6e-98 363.2 251 70.9
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 1.6e-98 363.2 212 84.9
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.4e-97 360.1 259 75.7
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 7.7e-93 344.4 251 67.3
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 3.8e-92 342.0 238 70.2
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 8.5e-92 340.9 199 81.9
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 8.5e-92 340.9 194 85.1
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.6e-90 336.7 253 69.2
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.6e-90 336.7 210 78.6
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 1.8e-89 333.2 251 69.7
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 4.4e-88 328.6 255 69.0
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 7.5e-88 327.8 243 71.2
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.0e-85 319.7 270 65.9
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 3.5e-85 318.9 206 80.1
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 1.2e-80 303.9 251 60.6
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.7e-79 300.1 337 54.0
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.4e-78 297.0 265 61.9
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 4.1e-78 295.4 211 73.9
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 3.5e-77 292.4 286 59.4
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 4.5e-77 292.0 252 64.3
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 6.6e-76 288.1 161 85.1
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 3.6e-74 282.3 158 87.3
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 8.9e-73 277.7 209 69.9
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 2.2e-71 273.1 240 52.9
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 5.9e-69 265.0 230 53.9
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 3.1e-65 252.7 171 74.9
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 6.8e-65 251.5 230 54.3
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.2e-63 246.5 140 88.6
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.3e-60 236.5 206 61.7
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 3.9e-60 235.7 182 67.0
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.1e-54 217.6 148 71.6
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 4.1e-46 189.1 112 79.5
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 4.6e-45 185.7 117 80.3
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 3.9e-44 182.6 133 74.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 4.6e-37 159.1 91 81.3
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 1.1e-33 147.9 174 49.4
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 1.4e-33 147.5 95 74.7
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.2e-32 144.4 255 42.4
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-30 137.1 102 69.6
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 5.7e-11 72.4 54 66.7


User provided reference genes

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