Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.3e-41 172.6 83 100.0
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 4.2e-40 167.5 83 96.4
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.4e-38 162.5 83 94.0
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 1.7e-33 145.6 83 83.1
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 1.7e-33 145.6 83 83.1
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 2.2e-33 145.2 82 82.9
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 3.8e-33 144.4 80 85.0
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 3.8e-33 144.4 82 84.1
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 8.5e-33 143.3 83 81.9
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 1.1e-32 142.9 80 83.8
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 1.4e-32 142.5 83 80.7
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 2.5e-32 141.7 80 82.5
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 3.2e-32 141.4 80 83.8
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 3.2e-32 141.4 80 85.0
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 3.2e-32 141.4 83 81.9
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 3.2e-32 141.4 80 83.8
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 7.2e-32 140.2 83 78.3
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 9.4e-32 139.8 80 81.2
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 1.2e-31 139.4 80 82.5
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 1.2e-31 139.4 80 82.5
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.6e-31 139.0 80 82.5
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 3.6e-31 137.9 83 79.5
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 3.6e-31 137.9 80 80.0
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 6.1e-31 137.1 82 79.3
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 6.1e-31 137.1 82 78.0
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 1.0e-30 136.3 80 77.5
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.3e-30 135.2 83 77.1
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 2.3e-30 135.2 83 77.1
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 2.3e-30 135.2 80 78.8
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 5.1e-30 134.0 81 75.3
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 5.1e-30 134.0 80 76.2
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 6.7e-30 133.7 83 74.7
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 6.7e-30 133.7 80 78.8
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 6.7e-30 133.7 83 78.3
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 8.8e-30 133.3 83 78.3
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 8.8e-30 133.3 83 75.9
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 1.1e-29 132.9 80 76.2
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 1.5e-29 132.5 83 74.7
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 2.0e-29 132.1 80 78.8
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 2.0e-29 132.1 80 75.0
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 2.0e-29 132.1 80 75.0
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 2.6e-29 131.7 83 72.3
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 2.6e-29 131.7 80 78.8
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 4.4e-29 131.0 80 78.8
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 4.4e-29 131.0 80 78.8
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 4.4e-29 131.0 80 78.8
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 4.4e-29 131.0 80 75.0
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 7.4e-29 130.2 80 78.8
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 7.4e-29 130.2 80 75.0
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 7.4e-29 130.2 83 73.5
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 9.7e-29 129.8 80 78.8
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 9.7e-29 129.8 80 75.0
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 9.7e-29 129.8 83 77.1
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 9.7e-29 129.8 81 70.4
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 9.7e-29 129.8 80 73.8
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 1.3e-28 129.4 80 73.8
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 1.7e-28 129.0 82 72.0
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 1.7e-28 129.0 82 72.0
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 1.7e-28 129.0 80 78.8
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 1.7e-28 129.0 80 78.8
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 1.7e-28 129.0 80 78.8
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 1.7e-28 129.0 81 74.1
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 2.2e-28 128.6 83 72.3
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 2.8e-28 128.3 80 77.5
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 2.8e-28 128.3 80 77.5
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 3.7e-28 127.9 80 71.2
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 6.3e-28 127.1 80 76.2
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 8.2e-28 126.7 81 71.6
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 8.2e-28 126.7 80 76.2
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 8.2e-28 126.7 80 73.8
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 8.2e-28 126.7 80 76.2
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 1.1e-27 126.3 81 70.4
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.1e-27 126.3 83 72.3
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 1.1e-27 126.3 81 72.8
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 71.2
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 1.8e-27 125.6 80 75.0
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 73.8
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 1.8e-27 125.6 81 72.8
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 72.5
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 2.4e-27 125.2 83 72.3
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 4.1e-27 124.4 80 72.5
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 5.3e-27 124.0 81 71.6
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 9.1e-27 123.2 80 75.0
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 73.8
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 7.7e-26 120.2 80 68.8
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 1.7e-25 119.0 80 68.8
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 1.1e-24 116.3 130 52.3
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 2.5e-24 115.2 81 69.1
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 3.2e-24 114.8 69 78.3
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 7.2e-24 113.6 80 68.8
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 3.6e-23 111.3 80 65.0
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.8e-22 109.0 66 72.7
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 4.0e-22 107.8 81 61.7
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 2.0e-21 105.5 65 72.3
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 2.8e-20 101.7 77 66.2
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 1.1e-19 99.8 80 61.2
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 7.7e-18 93.6 89 55.1
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 2.2e-17 92.0 85 58.8
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 2.2e-17 92.0 79 58.2
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 5.5e-16 87.4 105 46.7
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 1.2e-15 86.3 61 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.7e-15 84.3 80 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.3e-14 82.0 80 53.8
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 2.4e-11 72.0 45 73.3
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 2.7e-10 68.6 77 44.2
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 3.8e-09 64.7 58 53.4
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 5.0e-09 64.3 40 75.0
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.2e-08 61.2 58 53.4
Hma1.2p1_2341F.1_g320300 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 6.1e-07 57.4 80 43.8


User provided reference genes

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