Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.5e-38 161.8 91 100.0
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 5.5e-33 144.1 91 81.3
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 1.6e-32 142.5 90 87.8
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 1.3e-29 132.9 90 78.9
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 2.0e-27 125.6 94 72.3
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 5.8e-27 124.0 93 73.1
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 1.4e-25 119.4 92 71.7
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 3.2e-25 118.2 93 69.9
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 4.2e-25 117.9 94 68.1
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 5.5e-25 117.5 93 71.0
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.1e-24 115.5 92 70.7
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 2.1e-24 115.5 92 68.5
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.5e-24 114.8 92 68.5
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.0e-23 113.2 92 69.6
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.8e-23 112.5 92 68.5
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 9.7e-22 106.7 92 66.3
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.1e-20 101.3 90 64.4
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 6.9e-20 100.5 94 63.8
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 6.9e-20 100.5 93 64.5
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.2e-19 99.8 89 64.0
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 1.5e-19 99.4 92 62.0
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.5e-19 99.4 90 62.2
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.5e-19 97.8 89 62.9
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.9e-19 97.4 89 60.7
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 5.9e-19 97.4 89 60.7
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 5.9e-19 97.4 91 61.5
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.0e-18 96.7 91 62.6
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.0e-18 96.7 95 62.1
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 1.7e-18 95.9 93 61.3
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 2.9e-18 95.1 91 65.9
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.1e-17 93.2 91 58.2
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.1e-17 93.2 90 60.0
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.1e-17 93.2 93 61.3
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 1.4e-17 92.8 94 61.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.4e-17 92.8 94 60.6
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 2.5e-17 92.0 90 56.7
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 3.2e-17 91.7 100 59.0
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 4.2e-17 91.3 90 60.0
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 5.5e-17 90.9 93 59.1
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.2e-17 90.5 90 60.0
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 9.3e-17 90.1 93 60.2
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.3e-17 90.1 90 60.0
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.3e-17 90.1 90 57.8
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 1.2e-16 89.7 90 55.6
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 1.6e-16 89.4 93 58.1
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 1.6e-16 89.4 93 59.1
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 2.1e-16 89.0 95 63.2
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 2.1e-16 89.0 89 58.4
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 2.7e-16 88.6 93 60.2
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 2.7e-16 88.6 93 58.1
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 3.6e-16 88.2 100 58.0
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 6.1e-16 87.4 96 58.3
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 6.1e-16 87.4 94 58.5
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 7.9e-16 87.0 97 60.8
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 1.0e-15 86.7 89 59.6
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.8e-15 85.9 98 55.1
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 2.3e-15 85.5 91 58.2
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 3.0e-15 85.1 96 59.4
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 3.0e-15 85.1 93 57.0
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 3.9e-15 84.7 94 57.4
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 5.1e-15 84.3 96 58.3
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 6.7e-15 84.0 93 54.8
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 8.8e-15 83.6 93 53.8
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.1e-14 83.2 94 59.6
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.5e-14 82.8 96 64.6
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.5e-14 82.8 96 64.6
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.5e-14 82.8 96 64.6
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 1.5e-14 82.8 93 54.8
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 2.5e-14 82.0 97 56.7
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 2.5e-14 82.0 92 57.6
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.5e-14 82.0 96 57.3
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.5e-14 82.0 92 54.3
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.5e-14 82.0 92 57.6
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 3.3e-14 81.6 95 61.1
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 5.7e-14 80.9 89 57.3
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 7.4e-14 80.5 96 57.3
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 7.4e-14 80.5 96 57.3
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 7.4e-14 80.5 99 54.5
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 9.7e-14 80.1 89 52.8
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 1.3e-13 79.7 89 56.2
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 1.7e-13 79.3 90 52.2
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.7e-13 79.3 94 56.4
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.7e-13 79.3 93 55.9
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.8e-13 78.6 87 52.9
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 4.8e-13 77.8 89 52.8
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 4.8e-13 77.8 79 55.7
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 6.3e-13 77.4 91 56.0
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 6.3e-13 77.4 92 52.2
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.1e-12 76.6 97 51.5
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 1.4e-12 76.3 96 60.4
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 1.4e-12 76.3 94 55.3
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.8e-12 75.9 95 57.9
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.8e-12 75.9 95 57.9
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.8e-12 75.9 95 57.9
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 2.4e-12 75.5 93 60.2
Ciclev10029666m.g Citrus clementina HOM05D003477 ORTHO05D004043 2.4e-12 75.5 93 55.9
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 2.4e-12 75.5 95 54.7
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 3.1e-12 75.1 87 55.2
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 3.1e-12 75.1 89 49.4
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.1e-12 75.1 93 54.8
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 4.1e-12 74.7 79 55.7
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 4.1e-12 74.7 89 56.2
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 4.1e-12 74.7 90 57.8
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 5.3e-12 74.3 94 59.6
EL10Ac9g22255 Beta vulgaris HOM05D003477 ORTHO05D004043 9.1e-12 73.6 82 57.3
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 1.2e-11 73.2 94 57.4
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 1.5e-11 72.8 91 52.7
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.5e-11 72.8 101 51.5
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.6e-11 72.0 101 51.5
Hund06306 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.6e-11 72.0 89 53.9
COL.COLO4_32573 Corchorus olitorius HOM05D003511 ORTHO05D004403 4.5e-11 71.2 52 75.0
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 5.9e-11 70.9 92 57.6
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 5.9e-11 70.9 92 57.6
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 5.9e-11 70.9 92 57.6
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 5.9e-11 70.9 92 57.6
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 7.7e-11 70.5 95 55.8
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 7.7e-11 70.5 87 54.0
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 2.2e-10 68.9 96 51.0
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.9e-10 68.6 103 50.5
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 2.9e-10 68.6 76 59.2
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.9e-10 68.6 94 50.0
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 6.5e-10 67.4 93 51.6
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 6.5e-10 67.4 95 46.3
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 8.5e-10 67.0 91 51.6
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 8.5e-10 67.0 93 49.5
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.4e-09 66.2 96 50.0
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 1.9e-09 65.9 99 47.5
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 1.9e-09 65.9 99 47.5
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 1.9e-09 65.9 99 47.5
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 1.9e-09 65.9 99 47.5
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.2e-09 65.1 92 46.7
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 3.2e-09 65.1 95 50.5
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 5.5e-09 64.3 96 50.0
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 7.2e-09 63.9 93 45.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 9.4e-09 63.5 102 48.0
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 9.4e-09 63.5 88 47.7
SGA_v2.0_scaffold13G06619 Striga asiatica HOM05D003477 ORTHO05D004043 9.4e-09 63.5 113 42.5
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 1.2e-08 63.2 94 47.9
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 1.2e-08 63.2 95 47.4
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.2e-08 63.2 93 46.2
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.6e-08 62.8 93 53.8
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.6e-08 62.8 93 45.2
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.6e-08 62.8 95 47.4
DCAR_021977 Daucus carota HOM05D003477 ORTHO05D004043 1.6e-08 62.8 91 48.4
Thhalv10026653m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.6e-08 62.8 95 53.7
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 2.1e-08 62.4 92 50.0
unitig_0.g877 Utricularia gibba HOM05D003477 ORTHO05D004043 2.1e-08 62.4 94 46.8
BcaNung04163 Brassica carinata HOM05D003477 ORTHO05D004043 2.7e-08 62.0 94 53.2
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 2.7e-08 62.0 95 45.3
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.7e-08 61.2 96 45.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 4.7e-08 61.2 88 50.0
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 4.7e-08 61.2 95 44.2
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 7.9e-08 60.5 94 42.6
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.0e-07 60.1 93 49.5
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 1.0e-07 60.1 100 45.0
CARHR242520 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.4e-07 59.7 93 52.7
Sc08g0001310 Simmondsia chinensis HOM05D003477 ORTHO05D004043 1.8e-07 59.3 95 51.6
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.3e-07 58.9 91 45.1
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 2.3e-07 58.9 97 48.5
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 3.0e-07 58.5 94 50.0
unitig_61.g26022 Utricularia gibba HOM05D003477 ORTHO05D004043 3.0e-07 58.5 93 46.2
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.9e-07 58.2 95 47.4
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.9e-07 58.2 95 47.4
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.9e-07 58.2 91 45.1
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 6.7e-07 57.4 99 45.5
SalBow6G1437 Salvia bowleyana HOM05D003477 ORTHO05D004043 6.7e-07 57.4 70 55.7
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 8.8e-07 57.0 90 46.7
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.1e-06 56.6 95 42.1
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 1.5e-06 56.2 98 44.9
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 2.0e-06 55.8 90 48.9
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 2.0e-06 55.8 94 44.7
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 2.0e-06 55.8 97 46.4
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 2.0e-06 55.8 93 49.5
unitig_22.g5195 Utricularia gibba HOM05D003477 ORTHO05D004043 2.0e-06 55.8 92 44.6
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 4.4e-06 54.7 103 43.7
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 7.4e-06 53.9 92 48.9


User provided reference genes

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