Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G091700 Populus trichocarpa HOM05D000529 ORTHO05D038917 6.1e-71 270.8 144 100.0
Potri.007G039300 Populus trichocarpa HOM05D000529 ORTHO05D000472 6.0e-26 121.3 111 59.5
Sabra07G0035300 Salix brachista HOM05D000529 ORTHO05D000472 1.7e-25 119.8 108 57.4
Sabra07G0035100 Salix brachista HOM05D000529 ORTHO05D000472 1.6e-23 113.2 108 56.5
Manes.12G094100 Manihot esculenta HOM05D000529 ORTHO05D000472 4.9e-20 101.7 108 51.9
Ciclev10018897m.g Citrus clementina HOM05D000529 ORTHO05D000472 7.8e-18 94.4 108 47.2
Ciclev10024907m.g Citrus clementina HOM05D000529 ORTHO05D000472 1.0e-17 94.0 108 47.2
vmacro17917 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 1.3e-15 87.0 108 45.4
Dinv29950 Davidia involucrata HOM05D000529 ORTHO05D000472 2.8e-15 85.9 108 43.5
CAN.G836.51 Capsicum annuum HOM05D000529 ORTHO05D000472 4.8e-15 85.1 108 44.4
GSVIVG01003571001 Vitis vinifera HOM05D000529 ORTHO05D000472 6.2e-15 84.7 108 41.7
RhsimUnG0071100 Rhododendron simsii HOM05D000529 ORTHO05D000472 1.8e-14 83.2 108 43.5
arahy.Tifrunner.gnm1.ann1.W15MA1 Arachis hypogaea HOM05D000139 ORTHO05D000103 2.4e-14 82.8 105 47.6
Peaxi162Scf00993g00326 Petunia axillaris HOM05D000529 ORTHO05D000472 5.3e-14 81.6 108 44.4
Rhsim08G0104500 Rhododendron simsii HOM05D000529 ORTHO05D000472 9.0e-14 80.9 108 42.6
Cpa.g.sc6.402 Carica papaya HOM05D000529 ORTHO05D000472 1.5e-13 80.1 104 41.3
arahy.Tifrunner.gnm1.ann1.XFEU61 Arachis hypogaea HOM05D000139 ORTHO05D000103 3.4e-13 79.0 105 45.7
arahy.Tifrunner.gnm1.ann1.RP061L Arachis hypogaea HOM05D000033 ORTHO05D038917 4.5e-13 78.6 120 40.8
arahy.Tifrunner.gnm1.ann1.50YJF0 Arachis hypogaea HOM05D000033 ORTHO05D085538 7.6e-13 77.8 120 39.2
Sopen02g035080 Solanum pennellii HOM05D000529 ORTHO05D000472 7.6e-13 77.8 108 40.7
arahy.Tifrunner.gnm1.ann1.3N9TDM Arachis hypogaea HOM05D000033 ORTHO05D019823 1.3e-12 77.0 120 40.0
Nitab4.5_0002157g0040 Nicotiana tabacum HOM05D000529 ORTHO05D000472 1.3e-12 77.0 108 43.5
vmacro17918 Vaccinium macrocarpon HOM05D000529 ORTHO05D000472 1.3e-12 77.0 108 40.7
GSVIVG01003565001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.3e-12 77.0 108 39.8
arahy.Tifrunner.gnm1.ann1.AANK3P Arachis hypogaea HOM05D000033 ORTHO05D083727 1.7e-12 76.6 142 35.9
Solyc02g090380.4 Solanum lycopersicum HOM05D000529 ORTHO05D000472 2.2e-12 76.3 108 39.8
Nitab4.5_0007024g0050 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.8e-12 75.5 108 41.7
GSVIVG01003569001 Vitis vinifera HOM05D000529 ORTHO05D019823 3.8e-12 75.5 112 36.6
CAN.G836.52 Capsicum annuum HOM05D000529 ORTHO05D000472 1.1e-11 73.9 108 39.8
GSVIVG01007144001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.1e-11 73.9 112 36.6
CSS0009502 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 1.4e-11 73.6 126 38.1
Gorai.007G210000 Gossypium raimondii HOM05D000529 ORTHO05D000472 1.9e-11 73.2 108 37.0
CSS0009849 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 2.4e-11 72.8 107 40.2
Dinv29949 Davidia involucrata HOM05D000529 ORTHO05D000472 3.2e-11 72.4 100 40.0
Nitab4.5_0009901g0030 Nicotiana tabacum HOM05D000529 ORTHO05D000472 3.2e-11 72.4 113 34.5
Prupe.7G140400 Prunus persica HOM05D000529 ORTHO05D020679 3.2e-11 72.4 106 41.5
CSS0019496 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 4.2e-11 72.0 107 40.2
TWI09G1247 Tripterygium wilfordii HOM05D000529 ORTHO05D000472 4.2e-11 72.0 108 35.2
Cc07_g05700 Coffea canephora HOM05D000529 ORTHO05D000472 7.1e-11 71.2 108 40.7
Dinv39897 Davidia involucrata HOM05D000529 ORTHO05D000472 7.1e-11 71.2 113 38.1
Gohir.A11G189400 Gossypium hirsutum HOM05D000529 ORTHO05D000472 7.1e-11 71.2 108 36.1
Gohir.D11G196100 Gossypium hirsutum HOM05D000529 ORTHO05D000472 7.1e-11 71.2 108 36.1
Duzib264G0157 Durio zibethinus HOM05D000529 ORTHO05D000472 9.3e-11 70.9 108 40.7
Nitab4.5_0024858g0010 Nicotiana tabacum HOM05D000529 ORTHO05D010311 9.3e-11 70.9 110 38.2
GSVIVG01003572001 Vitis vinifera HOM05D000529 ORTHO05D000472 9.3e-11 70.9 108 38.0
Nitab4.5_0000681g0070 Nicotiana tabacum HOM05D000529 ORTHO05D010311 1.2e-10 70.5 109 38.5
QL02p078112 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-10 70.5 114 38.6
QL06p043215 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-10 70.5 107 43.0
QL93p0205_0245 Quercus lobata HOM05D000529 ORTHO05D000472 1.2e-10 70.5 114 38.6
Rhsim08G0104400 Rhododendron simsii HOM05D000529 ORTHO05D000472 1.2e-10 70.5 103 39.8
Cc07_g05690 Coffea canephora HOM05D000529 ORTHO05D010311 2.1e-10 69.7 108 38.9
ECA238G2361 Erigeron canadensis HOM05D000529 ORTHO05D000472 2.1e-10 69.7 105 37.1
Nitab4.5_0000806g0130 Nicotiana tabacum HOM05D000529 ORTHO05D000472 2.1e-10 69.7 111 35.1
Solyc02g077060.2 Solanum lycopersicum HOM05D000529 ORTHO05D010311 2.1e-10 69.7 110 39.1
Duzib147G1638 Durio zibethinus HOM05D000529 ORTHO05D000472 2.7e-10 69.3 108 39.8
FvH4_1g15500 Fragaria vesca HOM05D000529 ORTHO05D000472 3.5e-10 68.9 113 37.2
Oeu005309.1 Olea europaea HOM05D000529 ORTHO05D000472 3.5e-10 68.9 131 35.1
TAR381G0813 Trochodendron aralioides HOM05D000529 ORTHO05D000472 3.5e-10 68.9 121 37.2
Duzib264G0020 Durio zibethinus HOM05D000529 ORTHO05D000472 6.0e-10 68.2 104 41.3
Lj7A46T15 Lonicera japonica HOM05D000529 ORTHO05D000472 6.0e-10 68.2 103 44.7
Thecc.01G050400 Theobroma cacao HOM05D000529 ORTHO05D000472 6.0e-10 68.2 108 42.6
CiPaw.01G024500 Carya illinoinensis HOM05D000529 ORTHO05D000472 7.9e-10 67.8 111 39.6
CiPaw.01G025000 Carya illinoinensis HOM05D000529 ORTHO05D000472 7.9e-10 67.8 111 39.6
GSVIVG01003555001 Vitis vinifera HOM05D000529 ORTHO05D000472 1.0e-09 67.4 122 35.2
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.8e-09 66.6 91 45.1
QL03p072768 Quercus lobata HOM05D000529 ORTHO05D000472 1.8e-09 66.6 108 38.9
CSS0017568 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 2.3e-09 66.2 108 36.1
MD02G1164300 Malus domestica HOM05D000529 ORTHO05D000472 2.3e-09 66.2 110 32.7
QL03p072647 Quercus lobata HOM05D000529 ORTHO05D000472 2.3e-09 66.2 108 38.9
HanXRQChr04g0095241 Helianthus annuus HOM05D000529 ORTHO05D000472 3.0e-09 65.9 105 36.2
QL01p034705 Quercus lobata HOM05D000529 ORTHO05D000472 3.0e-09 65.9 115 36.5
Medtr8g479450 Medicago truncatula HOM05D000529 ORTHO05D000472 5.1e-09 65.1 139 33.8
DCAR_021433 Daucus carota HOM05D000529 ORTHO05D000472 6.7e-09 64.7 102 38.2
Prupe.7G139800 Prunus persica HOM05D000529 ORTHO05D000472 8.7e-09 64.3 104 35.6
GSVIVG01007146001 Vitis vinifera HOM05D000529 ORTHO05D000472 8.7e-09 64.3 124 33.9
Haze_15451 Corylus avellana HOM05D000529 ORTHO05D000472 1.1e-08 63.9 105 34.3
Nn5g29352 Nelumbo nucifera HOM05D000529 ORTHO05D000472 1.5e-08 63.5 121 30.6
PGR102G1711 Punica granatum HOM05D000529 ORTHO05D000472 1.5e-08 63.5 93 36.6
QL01p034712 Quercus lobata HOM05D000529 ORTHO05D000472 1.5e-08 63.5 112 37.5
PGSC0003DMG400010226 Solanum tuberosum HOM05D000529 ORTHO05D010311 2.5e-08 62.8 109 35.8
MD06G1115200 Malus domestica HOM05D000081 ORTHO05D000036 3.3e-08 62.4 106 36.8
Manes.13G128600 Manihot esculenta HOM05D000529 ORTHO05D000472 3.3e-08 62.4 112 35.7
Oeu036802.1 Olea europaea HOM05D000529 ORTHO05D000472 3.3e-08 62.4 125 35.2
Peaxi162Scf00223g00031 Petunia axillaris HOM05D000529 ORTHO05D010311 3.3e-08 62.4 112 34.8
Prupe.5G127600 Prunus persica HOM05D000529 ORTHO05D010311 3.3e-08 62.4 108 35.2
QL06p042786 Quercus lobata HOM05D000529 ORTHO05D000472 3.3e-08 62.4 111 36.9
QL06p042817 Quercus lobata HOM05D000529 ORTHO05D000472 3.3e-08 62.4 111 36.9
Nn4g24847 Nelumbo nucifera HOM05D000529 ORTHO05D000472 4.3e-08 62.0 109 34.9
MD06G1115400 Malus domestica HOM05D000529 ORTHO05D025806 5.6e-08 61.6 108 33.3
QL01p034905 Quercus lobata HOM05D000529 ORTHO05D000472 5.6e-08 61.6 116 36.2
Sabra07G0035000 Salix brachista HOM05D000529 ORTHO05D000472 5.6e-08 61.6 107 35.5
CsaV3_6G043030 Cucumis sativus L. HOM05D000529 ORTHO05D000472 9.6e-08 60.8 108 38.0
DCAR_015522 Daucus carota HOM05D000529 ORTHO05D000472 9.6e-08 60.8 104 30.8
RcHm_v2.0_Chr2g0104561 Rosa chinensis HOM05D000046 ORTHO05D025806 9.6e-08 60.8 105 36.2
Haze_15450 Corylus avellana HOM05D000529 ORTHO05D000472 1.3e-07 60.5 105 33.3
QL06p043260 Quercus lobata HOM05D000529 ORTHO05D000472 1.3e-07 60.5 107 35.5
Lalb_Chr05g0213151 Lupinus albus HOM05D000529 ORTHO05D000472 1.6e-07 60.1 118 36.4
MD15G1276900 Malus domestica HOM05D000529 ORTHO05D000472 1.6e-07 60.1 104 31.7
Sabra07G0035200 Salix brachista HOM05D000529 ORTHO05D000472 1.6e-07 60.1 103 35.9
DCAR_027670 Daucus carota HOM05D000174 ORTHO05D010311 2.1e-07 59.7 103 34.0
FAN26G3207 Fragaria x ananassa HOM05D000529 ORTHO05D000472 2.1e-07 59.7 105 35.2
MD02G1164800 Malus domestica HOM05D000529 ORTHO05D000472 2.1e-07 59.7 113 32.7
CiPaw.01G024000 Carya illinoinensis HOM05D000529 ORTHO05D000472 2.8e-07 59.3 130 33.8
Nn5g29351 Nelumbo nucifera HOM05D000529 ORTHO05D000472 2.8e-07 59.3 111 33.3
Prupe.7G138400 Prunus persica HOM05D000046 ORTHO05D025806 2.8e-07 59.3 136 31.6
HanXRQChr03g0067681 Helianthus annuus HOM05D000529 ORTHO05D000472 3.7e-07 58.9 142 31.7
Cfa021022 Carpinus fangiana HOM05D000529 ORTHO05D010311 4.8e-07 58.5 105 34.3
ClCG01G016630 Citrullus lanatus HOM05D000529 ORTHO05D000472 4.8e-07 58.5 109 36.7
Medtr8g079520 Medicago truncatula HOM05D000529 ORTHO05D000472 4.8e-07 58.5 111 35.1
Oeu036816.1 Olea europaea HOM05D000529 ORTHO05D036481 4.8e-07 58.5 106 35.8
Prupe.5G127900 Prunus persica HOM05D000529 ORTHO05D012517 4.8e-07 58.5 107 32.7
Sed0001841 Sechium edule HOM05D000529 ORTHO05D000472 4.8e-07 58.5 117 34.2
RcHm_v2.0_Chr2g0104201 Rosa chinensis HOM05D008495 ORTHO05D010311 6.2e-07 58.2 112 37.5
Sopen02g022000 Solanum pennellii HOM05D000529 ORTHO05D010311 6.2e-07 58.2 78 39.7
THA.LOC104819226 Tarenaya hassleriana HOM05D000529 ORTHO05D000472 6.2e-07 58.2 114 28.1
DCAR_010928 Daucus carota HOM05D000529 ORTHO05D000472 8.1e-07 57.8 103 34.0
HanXRQChr07g0191781 Helianthus annuus HOM05D000529 ORTHO05D000472 8.1e-07 57.8 92 35.9
FvH4_5g11200 Fragaria vesca HOM05D000248 ORTHO05D017958 1.1e-06 57.4 104 33.7
FAN18G1596 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.1e-06 57.4 104 33.7
HanXRQChr14g0430731 Helianthus annuus HOM05D000529 ORTHO05D000472 1.1e-06 57.4 90 36.7
Medtr8g479430 Medicago truncatula HOM05D000529 ORTHO05D000472 1.1e-06 57.4 103 35.9
Oeu036806.1 Olea europaea HOM05D000529 ORTHO05D000472 1.1e-06 57.4 125 33.6
QL04p095514 Quercus lobata HOM05D000083 ORTHO05D002708 1.1e-06 57.4 115 39.1
CiPaw.01G103200 Carya illinoinensis HOM05D000529 ORTHO05D000472 1.4e-06 57.0 112 32.1
FvH4_5g11220 Fragaria vesca HOM05D000248 ORTHO05D017958 1.4e-06 57.0 104 33.7
FAN18G4033 Fragaria x ananassa HOM05D000248 ORTHO05D017958 1.4e-06 57.0 104 33.7
Phvul.002G021700 Phaseolus vulgaris HOM05D000529 ORTHO05D000472 1.4e-06 57.0 118 35.6
Potri.007G039000 Populus trichocarpa HOM05D000529 ORTHO05D000472 1.4e-06 57.0 107 32.7
PGR102G1677 Punica granatum HOM05D000529 ORTHO05D000472 1.4e-06 57.0 104 33.7
QL06p042829 Quercus lobata HOM05D000529 ORTHO05D000472 1.4e-06 57.0 111 36.0
RcHm_v2.0_Chr2g0102961 Rosa chinensis HOM05D000046 ORTHO05D020739 1.4e-06 57.0 113 32.7
Sabra07G0031700 Salix brachista HOM05D000529 ORTHO05D000472 1.8e-06 56.6 107 32.7
CiPaw.01G024600 Carya illinoinensis HOM05D000529 ORTHO05D000472 2.4e-06 56.2 112 33.9
PSO063G0020 Papaver somniferum HOM05D000033 ORTHO05D304601 2.4e-06 56.2 108 32.4
Rhsim08G0202200 Rhododendron simsii HOM05D001266 ORTHO05D010311 3.1e-06 55.8 147 27.9
Sed0023813 Sechium edule HOM05D000456 ORTHO05D373143 3.1e-06 55.8 109 34.9
CSS0015606 Camellia sinensis var. sinensis HOM05D000529 ORTHO05D000472 4.0e-06 55.5 108 36.1
Cfa003970 Carpinus fangiana HOM05D000529 ORTHO05D000472 4.0e-06 55.5 105 32.4
Oeu036791.1 Olea europaea HOM05D000529 ORTHO05D010311 4.0e-06 55.5 118 32.2
Prupe.7G139700 Prunus persica HOM05D000529 ORTHO05D000472 4.0e-06 55.5 107 32.7
PGR102G0329 Punica granatum HOM05D000529 ORTHO05D010311 4.0e-06 55.5 93 33.3
CiPaw.01G025100 Carya illinoinensis HOM05D000529 ORTHO05D000472 5.3e-06 55.1 112 34.8
FAN02G4337 Fragaria x ananassa HOM05D000529 ORTHO05D010311 5.3e-06 55.1 106 31.1
Glyma.01G183400 Glycine max HOM05D000529 ORTHO05D000472 5.3e-06 55.1 105 36.2
HanXRQChr07g0191761 Helianthus annuus HOM05D000529 ORTHO05D000472 5.3e-06 55.1 91 34.1
Lsat_1_v5_gn_4_168480 Lactuca sativa HOM05D000529 ORTHO05D000472 5.3e-06 55.1 127 30.7
Rhsim08G0201700 Rhododendron simsii HOM05D001266 ORTHO05D010311 5.3e-06 55.1 104 33.7
CiPaw.01G025200 Carya illinoinensis HOM05D000529 ORTHO05D000472 6.9e-06 54.7 112 33.9
Dinv19756 Davidia involucrata HOM05D003049 ORTHO05D003531 6.9e-06 54.7 72 36.1
ECA238G3481 Erigeron canadensis HOM05D021317 ORTHO05D017906 6.9e-06 54.7 93 35.5
Psat4g088680 Pisum sativum HOM05D000529 ORTHO05D000472 6.9e-06 54.7 79 36.7
Prupe.7G139600 Prunus persica HOM05D000529 ORTHO05D000472 6.9e-06 54.7 102 34.3
GSVIVG01003562001 Vitis vinifera HOM05D000529 ORTHO05D000472 6.9e-06 54.7 113 31.0
RcHm_v2.0_Chr2g0104151 Rosa chinensis HOM05D000529 ORTHO05D000472 9.0e-06 54.3 104 30.8


User provided reference genes

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