Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.1e-195 684.5 331 100.0
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.3e-180 636.3 340 90.6
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.9e-169 598.6 325 90.8
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 5.9e-162 574.3 340 82.4
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.2e-154 550.1 336 78.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 6.6e-153 544.3 340 76.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.6e-153 544.3 360 75.6
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.9e-152 542.7 350 76.0
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.2e-151 540.0 357 75.1
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 4.7e-151 538.1 349 75.1
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.1e-150 537.0 358 74.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.8e-150 536.2 337 76.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 3.1e-150 535.4 340 76.5
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 4.4e-149 531.6 335 76.7
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 1.7e-148 529.6 331 77.0
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-148 529.6 348 74.4
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.2e-148 529.3 331 77.0
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 8.3e-148 527.3 338 76.3
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 8.3e-148 527.3 342 75.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-147 526.9 342 75.1
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 1.4e-147 526.6 337 76.3
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.9e-147 526.2 336 75.0
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.4e-147 525.8 350 74.0
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 3.2e-147 525.4 349 74.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 9.2e-147 523.9 328 76.2
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.2e-146 523.5 351 73.8
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.6e-146 521.5 349 73.6
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.6e-146 521.5 349 73.6
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 7.8e-146 520.8 342 76.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.0e-145 520.4 346 72.8
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.9e-145 518.5 357 71.7
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 5.1e-145 518.1 356 72.2
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-144 516.5 342 74.0
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.5e-144 515.8 343 74.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.5e-144 515.8 312 84.0
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 2.5e-144 515.8 343 74.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.3e-144 515.4 328 75.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.3e-144 515.0 348 72.1
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 7.3e-144 514.2 335 75.2
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.6e-143 513.1 372 69.6
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.1e-142 510.4 337 74.2
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.1e-142 510.4 329 75.1
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.1e-142 510.4 352 72.2
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.4e-142 510.0 354 70.1
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.3e-142 509.2 336 73.2
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-142 508.8 348 71.3
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 4.0e-142 508.4 353 70.8
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 4.0e-142 508.4 351 72.9
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.2e-142 508.1 342 71.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.8e-142 507.7 350 70.0
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 8.9e-142 507.3 351 73.2
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.2e-141 506.9 335 74.6
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.0e-141 506.1 343 72.0
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.6e-141 505.8 345 72.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 2.6e-141 505.8 354 70.1
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 2.6e-141 505.8 355 71.3
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 3.4e-141 505.4 341 73.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 5.8e-141 504.6 362 70.4
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 7.6e-141 504.2 354 69.8
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.2e-140 502.7 345 71.0
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 3.7e-140 501.9 337 72.4
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 4.9e-140 501.5 332 74.1
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 8.4e-140 500.7 336 72.6
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 8.4e-140 500.7 355 69.6
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-139 500.4 339 72.9
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.4e-139 500.0 364 69.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 7.1e-139 497.7 377 67.4
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 9.2e-139 497.3 342 71.9
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.8e-138 494.2 347 71.2
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.0e-137 493.8 344 72.7
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.3e-137 493.4 372 68.3
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.3e-137 493.4 346 70.8
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.3e-137 492.7 349 70.8
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 3.0e-137 492.3 374 66.6
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 5.1e-137 491.5 344 69.8
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 5.1e-137 491.5 350 70.3
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 8.6e-137 490.7 345 71.0
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.1e-136 490.3 332 73.2
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 7.3e-136 487.6 346 70.2
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 7.3e-136 487.6 346 69.9
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.6e-135 486.5 345 71.3
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.1e-134 483.8 330 72.4
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 1.8e-134 483.0 345 71.9
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 2.4e-134 482.6 345 71.3
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 4.0e-134 481.9 345 70.1
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 5.2e-134 481.5 360 68.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.2e-134 481.5 352 69.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 8.9e-134 480.7 332 72.0
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-133 478.8 345 70.7
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 4.4e-133 478.4 336 72.6
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 9.9e-133 477.2 345 69.3
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.7e-132 476.5 339 72.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.2e-132 476.1 346 71.1
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-131 473.4 342 71.3
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.4e-131 473.4 342 71.3
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 4.2e-131 471.9 365 67.4
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 2.1e-130 469.5 337 71.2
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 3.5e-130 468.8 327 72.2
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 6.0e-130 468.0 337 70.6
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.3e-129 466.8 353 68.6
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 3.0e-129 465.7 351 66.1
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.9e-129 465.3 337 70.0
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.5e-128 462.6 373 63.8
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.6e-128 461.5 338 68.3
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 9.6e-128 460.7 343 67.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 4.0e-126 455.3 323 68.1
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 9.0e-126 454.1 340 66.8
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.2e-125 453.8 375 61.9
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 2.0e-125 453.0 331 70.1
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.4e-125 451.8 333 70.3
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.7e-124 449.9 344 69.2
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.9e-124 449.1 335 68.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.1e-123 447.2 327 69.7
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 2.4e-123 446.0 335 67.2
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 6.0e-122 441.4 347 62.5
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 8.7e-121 437.6 305 70.8
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.5e-120 436.0 325 68.0
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 3.3e-120 435.6 514 48.8
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 2.1e-119 433.0 353 62.6
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.2e-119 431.4 361 62.6
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.1e-118 429.1 409 56.7
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 6.9e-118 427.9 328 66.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 3.4e-117 425.6 320 70.0
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 7.6e-117 424.5 368 59.5
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.4e-115 420.2 354 61.3
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.6e-114 416.8 420 55.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 3.3e-112 409.1 402 55.7
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.7e-111 405.6 355 59.4
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.0e-108 397.5 323 62.8
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.1e-103 379.8 361 57.3
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 8.2e-103 377.9 308 64.0
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.2e-98 364.0 363 54.0
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.1e-98 363.2 325 59.1
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.4e-93 345.9 338 55.6
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 3.7e-87 325.9 361 47.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.8e-86 323.6 375 49.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.7e-84 317.0 232 65.9
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.0e-76 288.9 374 43.6
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.6e-74 283.9 305 55.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 4.7e-74 282.3 163 79.1
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.1e-72 277.7 333 45.3
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 7.5e-72 275.0 369 43.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 5.5e-67 258.8 239 60.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 5.5e-67 258.8 239 60.3
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.7e-66 255.8 204 67.2
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 4.7e-66 255.8 206 58.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 1.0e-65 254.6 227 63.9
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 6.3e-63 245.4 398 37.2
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 9.1e-62 241.5 207 62.8
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.0e-57 226.1 179 64.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 1.1e-51 208.0 168 64.3
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 4.0e-49 199.5 135 74.8
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.0e-45 187.2 128 64.8
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.1e-38 162.9 102 75.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.1e-35 154.8 355 31.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.7e-34 149.4 329 33.7
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.0e-33 146.4 122 59.0
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 8.6e-28 128.6 72 77.8
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 2.1e-18 97.4 81 63.0
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.4e-16 89.7 63 68.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.6e-08 63.9 33 75.8


User provided reference genes

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