Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G088600 Populus trichocarpa HOM05D006273 ORTHO05D007607 1.9e-173 612.5 318 100.0
Sabra09G0068600 Salix brachista HOM05D006273 ORTHO05D007607 1.2e-132 476.9 379 73.4
Manes.10G081700 Manihot esculenta HOM05D006273 ORTHO05D007607 5.2e-107 391.7 339 68.1
Thecc.02G116800 Theobroma cacao HOM05D006273 ORTHO05D007607 5.3e-91 338.6 334 60.8
Dinv42237 Davidia involucrata HOM05D006273 ORTHO05D007607 5.8e-90 335.1 333 60.4
Gohir.A12G019800 Gossypium hirsutum HOM05D006273 ORTHO05D007607 7.6e-90 334.7 338 58.9
Duzib248G0443 Durio zibethinus HOM05D006273 ORTHO05D007607 1.7e-89 333.6 341 58.9
Gohir.D12G020000 Gossypium hirsutum HOM05D006273 ORTHO05D007607 2.2e-89 333.2 338 58.9
Gorai.008G020400 Gossypium raimondii HOM05D006273 ORTHO05D007607 2.2e-89 333.2 338 58.9
Duzib132G0234 Durio zibethinus HOM05D006273 ORTHO05D007607 1.1e-88 330.9 334 59.6
Cfa004628 Carpinus fangiana HOM05D006273 ORTHO05D007607 5.5e-88 328.6 333 61.3
COL.COLO4_32516 Corchorus olitorius HOM05D006273 ORTHO05D007607 3.3e-85 319.3 331 57.4
Hma1.2p1_1059F.1_g252960 Hydrangea macrophylla HOM05D006273 ORTHO05D007607 2.6e-82 309.7 333 57.4
Actinidia04385 Actinidia chinensis HOM05D002857 ORTHO05D007919 1.4e-80 303.9 334 56.6
Prupe.8G144600 Prunus persica HOM05D006273 ORTHO05D007607 5.5e-80 302.0 334 58.1
Ciclev10028827m.g Citrus clementina HOM05D006273 ORTHO05D007607 1.2e-79 300.8 330 56.4
Nn5g30577 Nelumbo nucifera HOM05D006273 ORTHO05D007607 5.1e-78 295.4 337 55.5
QL11p030642 Quercus lobata HOM05D006273 ORTHO05D007607 1.1e-77 294.3 335 57.0
CiPaw.05G017700 Carya illinoinensis HOM05D006273 ORTHO05D007607 4.3e-77 292.4 333 57.4
Haze_10223 Corylus avellana HOM05D006273 ORTHO05D007607 7.4e-77 291.6 311 58.5
Cpa.g.sc106.50 Carica papaya HOM05D006273 ORTHO05D007607 4.5e-74 282.3 334 53.9
MD05G1099900 Malus domestica HOM05D006273 ORTHO05D007607 1.0e-73 281.2 334 53.9
RcHm_v2.0_Chr6g0253781 Rosa chinensis HOM05D006273 ORTHO05D007607 1.8e-70 270.4 338 54.4
Lj5A219G34 Lonicera japonica HOM05D006273 ORTHO05D007607 2.0e-69 266.9 349 52.1
FAN15G3526 Fragaria x ananassa HOM05D006273 ORTHO05D007607 4.8e-68 262.3 333 52.6
GSVIVG01037839001 Vitis vinifera HOM05D006273 ORTHO05D007607 2.0e-66 256.9 354 50.3
FAN24G1968 Fragaria x ananassa HOM05D006273 ORTHO05D007607 7.7e-66 255.0 336 51.5
Oeu010445.1 Olea europaea HOM05D006273 ORTHO05D007607 1.0e-65 254.6 308 52.9
FAN24G2779 Fragaria x ananassa HOM05D006273 ORTHO05D007607 1.3e-65 254.2 336 50.9
TWI23G0281 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 3.8e-65 252.7 333 51.7
TAR381G1192 Trochodendron aralioides HOM05D006273 ORTHO05D007607 5.0e-65 252.3 325 52.0
CSS0011953 Camellia sinensis var. sinensis HOM05D002857 ORTHO05D007919 4.2e-64 249.2 306 52.6
ClCG10G010280 Citrullus lanatus HOM05D006273 ORTHO05D007607 4.2e-64 249.2 339 49.9
FAN20G1056 Fragaria x ananassa HOM05D006273 ORTHO05D007607 5.5e-64 248.8 327 50.5
Cc02_g19850 Coffea canephora HOM05D006273 ORTHO05D007607 7.2e-64 248.4 338 51.8
FAN27G2995 Fragaria x ananassa HOM05D006273 ORTHO05D007607 7.2e-64 248.4 334 51.2
MSTRG.5316 Avicennia marina HOM05D006273 ORTHO05D007607 4.7e-63 245.7 342 48.2
CsaV3_4G000230 Cucumis sativus L. HOM05D006273 ORTHO05D007607 2.3e-62 243.4 341 49.9
CANSAT25G0612 Cannabis sativa HOM05D006273 ORTHO05D007607 3.7e-60 236.1 337 49.6
MELO3C018010.2 Cucumis melo HOM05D006273 ORTHO05D007607 1.4e-59 234.2 338 47.9
FvH4_2g04340 Fragaria vesca HOM05D006273 ORTHO05D007607 9.1e-59 231.5 336 48.2
DCAR_001698 Daucus carota HOM05D006273 ORTHO05D007607 1.2e-58 231.1 341 45.5
Rhsim05G0090800 Rhododendron simsii HOM05D002857 ORTHO05D007919 6.5e-57 225.3 364 43.7
SalBow3G1994 Salvia bowleyana HOM05D006273 ORTHO05D007607 2.5e-56 223.4 370 41.4
PGR042G0373 Punica granatum HOM05D006273 ORTHO05D007607 5.5e-56 222.2 346 48.3
PGSC0003DMG400025745 Solanum tuberosum HOM05D006273 ORTHO05D007607 2.1e-55 220.3 344 45.1
Nitab4.5_0008075g0050 Nicotiana tabacum HOM05D006273 ORTHO05D007607 2.7e-55 219.9 343 45.2
PSO541G6083 Papaver somniferum HOM05D006273 ORTHO05D007607 6.1e-55 218.8 333 47.7
TAR628G0174 Trochodendron aralioides HOM05D006273 ORTHO05D007607 2.0e-53 213.8 334 45.8
Aqoxy6G02639 Aquilegia oxysepala HOM05D006273 ORTHO05D007607 6.3e-52 208.8 288 48.6
Sed0011178 Sechium edule HOM05D006273 ORTHO05D007607 5.3e-51 205.7 341 44.0
Sopen01g049300 Solanum pennellii HOM05D006273 ORTHO05D007607 5.3e-51 205.7 344 43.0
Solyc01g107030.3 Solanum lycopersicum HOM05D006273 ORTHO05D007607 2.0e-50 203.8 344 42.7
arahy.Tifrunner.gnm1.ann1.71AIDN Arachis hypogaea HOM05D006273 ORTHO05D007607 7.7e-50 201.8 332 43.4
PSO675G1322 Papaver somniferum HOM05D006273 ORTHO05D007607 1.0e-49 201.4 341 45.7
Potri.001G295000 Populus trichocarpa HOM05D006273 ORTHO05D007607 6.5e-49 198.7 146 73.3
Lj5g0005423 Lotus japonicus HOM05D006273 ORTHO05D007607 3.2e-48 196.4 340 43.2
Glyma.20G134100 Glycine max HOM05D006273 ORTHO05D007607 2.1e-47 193.7 328 43.9
vmacro19532 Vaccinium macrocarpon HOM05D006273 ORTHO05D007607 3.6e-47 193.0 404 38.4
VMungo0720G2467 Vigna mungo HOM05D006273 ORTHO05D007607 6.1e-47 192.2 328 42.7
Nn1g04569 Nelumbo nucifera HOM05D006273 ORTHO05D007607 8.0e-47 191.8 340 42.9
arahy.Tifrunner.gnm1.ann1.P501AI Arachis hypogaea HOM05D006273 ORTHO05D007607 6.7e-46 188.7 340 41.2
CAN.G606.58 Capsicum annuum HOM05D006273 ORTHO05D007607 8.8e-46 188.3 317 41.6
CSS0045592 Camellia sinensis var. sinensis HOM05D006273 ORTHO05D007607 9.7e-45 184.9 249 51.4
Phvul.007G045300 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.8e-44 183.3 332 43.4
Eucgr.G01219 Eucalyptus grandis HOM05D006273 ORTHO05D007607 2.0e-42 177.2 276 49.3
Hund24173 Selenicereus undatus HOM05D006273 ORTHO05D007607 5.9e-42 175.6 294 45.6
Glyma.10G257100 Glycine max HOM05D006273 ORTHO05D007607 1.3e-41 174.5 324 41.7
Peaxi162Scf00016g02848 Petunia axillaris HOM05D006273 ORTHO05D007607 3.8e-41 172.9 314 40.1
unitig_21.g20718 Utricularia gibba HOM05D002857 ORTHO05D007919 8.5e-41 171.8 305 42.6
EL10Ac9g22769 Beta vulgaris HOM05D006273 ORTHO05D007607 1.2e-39 167.9 351 38.2
Lalb_Chr06g0165121 Lupinus albus HOM05D006273 ORTHO05D007607 6.8e-38 162.2 248 43.1
Phvul.002G051700 Phaseolus vulgaris HOM05D006273 ORTHO05D007607 2.0e-37 160.6 326 38.7
THA.LOC104815220 Tarenaya hassleriana HOM05D006273 ORTHO05D007607 2.6e-37 160.2 335 40.6
Psat6g214920 Pisum sativum HOM05D006273 ORTHO05D007607 2.8e-36 156.8 222 44.1
Medtr1g106210 Medicago truncatula HOM05D006273 ORTHO05D007607 3.7e-36 156.4 325 39.4
ATR1153G071 Amborella trichopoda HOM05D006273 ORTHO05D007607 6.3e-36 155.6 339 42.2
TPR.G27136 Trifolium pratense HOM05D006273 ORTHO05D007607 1.1e-35 154.8 320 39.4
Migut.N01140 Erythranthe guttata HOM05D006273 ORTHO05D007607 1.4e-35 154.5 323 42.4
Sc18g0007420 Simmondsia chinensis HOM05D006273 ORTHO05D007607 5.4e-35 152.5 326 39.0
ECA234G1150 Erigeron canadensis HOM05D006273 ORTHO05D007607 1.6e-34 151.0 336 42.9
SGA_v2.0_scaffold225G43040 Striga asiatica HOM05D006273 ORTHO05D007607 4.5e-34 149.4 314 39.2
HanXRQChr10g0292221 Helianthus annuus HOM05D006273 ORTHO05D007607 2.3e-33 147.1 339 39.2
Ah.01g002130 Amaranthus hybridus HOM05D006273 ORTHO05D007607 1.9e-32 144.1 261 39.8
Sc18g0007460 Simmondsia chinensis HOM05D006273 ORTHO05D007607 4.2e-32 142.9 326 38.3
HPP92_007764 Vanilla planifolia HOM05D006273 ORTHO05D007607 3.6e-31 139.8 346 37.6
VMungo1215G3137 Vigna mungo HOM05D006273 ORTHO05D007607 1.0e-30 138.3 329 38.9
Lsat_1_v5_gn_5_114180 Lactuca sativa HOM05D006273 ORTHO05D007607 3.0e-30 136.7 326 39.9
CARHR095110 Cardamine hirsuta HOM05D006273 ORTHO05D007607 1.2e-29 134.8 340 38.5
Atru.chr5.2357 Acer truncatum HOM05D006273 ORTHO05D007607 3.4e-29 133.3 267 42.7
C05p45180 Brassica napus HOM05D006273 ORTHO05D007607 2.8e-28 130.2 325 38.8
Thhalv10021227m.g Eutrema salsugineum HOM05D006273 ORTHO05D007607 4.9e-28 129.4 331 40.5
Lj1g0018578 Lotus japonicus HOM05D006273 ORTHO05D007607 8.3e-28 128.6 314 34.4
Hund24138 Selenicereus undatus HOM05D006273 ORTHO05D007607 1.8e-27 127.5 204 42.6
Ca_11032_v3 Cicer arietinum L. HOM05D006273 ORTHO05D007607 3.1e-27 126.7 190 42.1
Carub.0003s1952 Capsella rubella HOM05D006273 ORTHO05D007607 7.0e-27 125.6 336 38.1
Glyma.01G242500 Glycine max HOM05D006273 ORTHO05D007607 1.6e-26 124.4 320 35.3
BcaB06g26035 Brassica carinata HOM05D006273 ORTHO05D007607 2.7e-26 123.6 331 37.8
BcaC05g28438 Brassica carinata HOM05D006273 ORTHO05D007607 5.9e-26 122.5 319 39.5
Glyma.11G001800 Glycine max HOM05D006273 ORTHO05D007607 5.9e-26 122.5 318 34.6
Nitab4.5_0001105g0020 Nicotiana tabacum HOM05D006273 ORTHO05D007607 5.9e-26 122.5 171 42.7
Aa31LG8G6430 Aethionema arabicum HOM05D006273 ORTHO05D007607 1.3e-25 121.3 307 37.8
SHI05153 Sapria himalayana HOM05D006273 ORTHO05D007607 3.9e-25 119.8 324 38.0
Sp3g17690 Schrenkiella parvula HOM05D006273 ORTHO05D007607 4.3e-24 116.3 335 36.4
BolC5t33244H Brassica oleracea HOM05D000470 ORTHO05D000348 7.3e-24 115.5 329 36.8
Os03g0203000 Oryza sativa ssp. japonica HOM05D006273 ORTHO05D007607 2.1e-23 114.0 291 34.4
TWI59G0086 Tripterygium wilfordii HOM05D006273 ORTHO05D007607 3.6e-23 113.2 193 39.9
FvH4_2g03741 Fragaria vesca HOM05D006273 ORTHO05D007607 8.0e-23 112.1 122 59.0
AUR62017546 Chenopodium quinoa HOM05D006273 ORTHO05D007607 4.0e-22 109.8 298 32.6
CDE02G4649 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 5.8e-21 105.9 315 34.9
AUR62025214 Chenopodium quinoa HOM05D000052 ORTHO05D007607 3.7e-20 103.2 186 36.6
Zm00001eb007690 Zea mays HOM05D006273 ORTHO05D007607 4.9e-20 102.8 338 34.9
Oeu037282.1 Olea europaea HOM05D006273 ORTHO05D007607 4.1e-19 99.8 236 36.9
AT3G19650 Arabidopsis thaliana HOM05D006273 ORTHO05D007607 1.6e-18 97.8 328 33.8
CDE04G2504 Ceratophyllum demersum HOM05D006273 ORTHO05D007607 1.3e-17 94.7 319 34.2
Aqoxy6G02626 Aquilegia oxysepala HOM05D002857 ORTHO05D007919 2.2e-12 77.4 213 33.8
AUR62044228 Chenopodium quinoa HOM05D006273 ORTHO05D007607 2.2e-12 77.4 312 27.6
AL3G33090 Arabidopsis lyrata HOM05D006273 ORTHO05D007607 6.4e-12 75.9 328 32.9
Dinv15806 Davidia involucrata HOM05D006273 ORTHO05D007607 1.9e-11 74.3 69 68.1
Actinidia00372 Actinidia chinensis HOM05D006273 ORTHO05D007607 1.6e-10 71.2 103 50.5
SEGI_25142 Sequoiadendron giganteum HOM05D006273 ORTHO05D007607 1.1e-08 65.1 253 30.4
TPR.G8308 Trifolium pratense HOM05D006273 ORTHO05D007607 1.1e-08 65.1 253 31.6
Dinv15805 Davidia involucrata HOM05D006273 ORTHO05D007607 2.1e-07 60.8 119 38.7
Actinidia27988 Actinidia chinensis HOM05D006273 ORTHO05D007607 3.6e-07 60.1 50 72.0
MBI19_g46225_MAGBIO Magnolia biondii HOM05D006273 ORTHO05D015157 8.9e-06 55.5 76 48.7


User provided reference genes

Program Settings