Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 6.9e-26 120.6 97 100.0
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 1.1e-18 96.7 99 75.8
Glyma.11G002000 Glycine max HOM05D006534 ORTHO05D006434 2.2e-16 89.0 104 78.8
CsaV3_4G000160 Cucumis sativus L. HOM05D006534 ORTHO05D006434 3.8e-16 88.2 97 82.5
Sed0015576 Sechium edule HOM05D006534 ORTHO05D006434 4.9e-16 87.8 98 82.7
TWI14G1419 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 6.5e-16 87.4 97 83.5
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 8.4e-16 87.0 97 76.3
Lj5g0022695 Lotus japonicus HOM05D006534 ORTHO05D006434 1.1e-15 86.7 98 74.5
Atru.chr5.2330 Acer truncatum HOM05D006534 ORTHO05D006434 1.9e-15 85.9 97 88.7
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 1.2e-14 83.2 97 86.6
Ca_02937_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 1.0e-13 80.1 97 69.1
ClCG10G010140 Citrullus lanatus HOM05D006534 ORTHO05D006434 8.7e-13 77.0 97 80.4
Sabra09G0066500 Salix brachista HOM05D006534 ORTHO05D006434 1.1e-12 76.6 82 93.9
Cfa004139 Carpinus fangiana HOM05D006534 ORTHO05D006434 2.5e-12 75.5 99 59.6
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 2.5e-12 75.5 97 73.2
Ah.01g007070 Amaranthus hybridus HOM05D006534 ORTHO05D006434 3.3e-12 75.1 113 59.3
arahy.Tifrunner.gnm1.ann1.HPS7HM Arachis hypogaea HOM05D006534 ORTHO05D006434 4.3e-12 74.7 108 63.0
CiPaw.05G018800 Carya illinoinensis HOM05D006534 ORTHO05D006434 4.3e-12 74.7 97 74.2
Duzib052G0836 Durio zibethinus HOM05D006534 ORTHO05D006434 4.3e-12 74.7 97 62.9
Oeu013796.1 Olea europaea HOM05D006534 ORTHO05D006434 5.7e-12 74.3 97 79.4
GSVIVG01037814001 Vitis vinifera HOM05D006534 ORTHO05D006434 4.8e-11 71.2 100 71.0
Glyma.01G242200 Glycine max HOM05D006534 ORTHO05D006434 1.1e-10 70.1 107 71.0
Lalb_Chr06g0165061 Lupinus albus HOM05D006534 ORTHO05D006434 1.1e-10 70.1 115 40.9
Sed0014956 Sechium edule HOM05D006534 ORTHO05D006434 1.8e-10 69.3 108 59.3
PGR042G3724 Punica granatum HOM05D006534 ORTHO05D006434 2.4e-10 68.9 97 74.2
HanXRQChr16g0509341 Helianthus annuus HOM05D006534 ORTHO05D006434 4.1e-10 68.2 97 82.5
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 4.1e-10 68.2 97 75.3
Aqoxy5G01709 Aquilegia oxysepala HOM05D006534 ORTHO05D006434 5.3e-10 67.8 97 73.2
GSVIVG01002630001 Vitis vinifera HOM05D006534 ORTHO05D006434 5.3e-10 67.8 99 64.6
ECA236G3390 Erigeron canadensis HOM05D006534 ORTHO05D006434 9.0e-10 67.0 97 82.5
Duzib248G1096 Durio zibethinus HOM05D006534 ORTHO05D006434 1.2e-09 66.6 97 74.2
CANSAT25G2579 Cannabis sativa HOM05D006534 ORTHO05D006434 2.0e-09 65.9 97 80.4
CANSAT25G3637 Cannabis sativa HOM05D006534 ORTHO05D006434 2.0e-09 65.9 97 80.4
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 2.6e-09 65.5 94 78.7
Glyma.10G256400 Glycine max HOM05D006534 ORTHO05D006434 3.4e-09 65.1 97 72.2
Glyma.20G135200 Glycine max HOM05D006534 ORTHO05D006434 3.4e-09 65.1 97 72.2
Dinv42239 Davidia involucrata HOM05D006534 ORTHO05D006434 4.5e-09 64.7 97 70.1
Ciclev10026875m.g Citrus clementina HOM05D006534 ORTHO05D006434 1.7e-08 62.8 97 51.5
CANSAT01G0131 Cannabis sativa HOM05D006534 ORTHO05D006434 2.2e-08 62.4 100 74.0
Ca_22100_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 2.2e-08 62.4 98 68.4
Solyc09g098300.3 Solanum lycopersicum HOM05D006534 ORTHO05D006434 2.2e-08 62.4 98 75.5
CDE06G1753 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 2.9e-08 62.0 98 80.6
Lalb_Chr16g0389271 Lupinus albus HOM05D006534 ORTHO05D006434 2.9e-08 62.0 98 61.2
TWI59G0168 Tripterygium wilfordii HOM05D006534 ORTHO05D006434 2.9e-08 62.0 97 74.2
Cfa004668 Carpinus fangiana HOM05D006534 ORTHO05D006434 5.0e-08 61.2 97 75.3
RcHm_v2.0_Chr2g0108271 Rosa chinensis HOM05D006534 ORTHO05D006434 8.5e-08 60.5 97 72.2
CDE04G3098 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 1.1e-07 60.1 97 71.1
Gorai.008G020000 Gossypium raimondii HOM05D006534 ORTHO05D006434 1.1e-07 60.1 97 75.3
HPP92_007768 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.1e-07 60.1 101 75.2
HPP92_007868 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.1e-07 60.1 101 75.2
arahy.Tifrunner.gnm1.ann1.VT3BTZ Arachis hypogaea HOM05D006534 ORTHO05D006434 1.4e-07 59.7 98 74.5
BcaC03g18364 Brassica carinata HOM05D006534 ORTHO05D006434 1.4e-07 59.7 94 63.8
CiPaw.06G165200 Carya illinoinensis HOM05D006534 ORTHO05D006434 1.4e-07 59.7 97 73.2
Manes.12G115500 Manihot esculenta HOM05D006534 ORTHO05D006434 1.4e-07 59.7 98 60.2
FAN26G0795 Fragaria x ananassa HOM05D006534 ORTHO05D006434 3.2e-07 58.5 97 78.4
Glyma.17G160200 Glycine max HOM05D006534 ORTHO05D006434 4.2e-07 58.2 98 58.2
MD02G1187200 Malus domestica HOM05D006534 ORTHO05D006434 4.2e-07 58.2 97 64.9
PGSC0003DMG400021608 Solanum tuberosum HOM05D006534 ORTHO05D006434 4.2e-07 58.2 85 80.0
Manes.13G110700 Manihot esculenta HOM05D006534 ORTHO05D006434 5.5e-07 57.8 97 73.2
Sp5g05410 Schrenkiella parvula HOM05D006534 ORTHO05D006434 5.5e-07 57.8 40 67.5
Dinv04040 Davidia involucrata HOM05D006534 ORTHO05D006434 9.3e-07 57.0 33 78.8
Sp2g29050 Schrenkiella parvula HOM05D006534 ORTHO05D006434 9.3e-07 57.0 94 70.2
ATR0739G136 Amborella trichopoda HOM05D006534 ORTHO05D006434 1.6e-06 56.2 97 62.9
C08p32480 Brassica napus HOM05D005891 ORTHO05D007214 2.1e-06 55.8 39 66.7
BolC8t50863H Brassica oleracea HOM05D005891 ORTHO05D006434 2.1e-06 55.8 39 66.7
Thhalv10017476m.g Eutrema salsugineum HOM05D019499 ORTHO05D006434 2.7e-06 55.5 97 74.2
RhsimUnG0124100 Rhododendron simsii HOM05D025032 ORTHO05D030542 2.7e-06 55.5 100 66.0
SMO163G0020 Selaginella moellendorffii HOM05D006534 ORTHO05D006434 3.6e-06 55.1 48 60.4
BcaC08g44829 Brassica carinata HOM05D019389 ORTHO05D006434 4.6e-06 54.7 90 50.0
C03p59650 Brassica napus HOM05D006534 ORTHO05D006434 4.6e-06 54.7 94 67.0
C06p24290 Brassica napus HOM05D019389 ORTHO05D006434 4.6e-06 54.7 90 50.0
BolC3t18227H Brassica oleracea HOM05D006534 ORTHO05D006434 4.6e-06 54.7 94 67.0
Phvul.003G234300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 4.6e-06 54.7 98 72.4
A05p02280 Brassica napus HOM05D006534 ORTHO05D006434 6.1e-06 54.3 24 95.8
A07p23310 Brassica napus HOM05D019389 ORTHO05D006434 6.1e-06 54.3 90 48.9
C04p02710 Brassica napus HOM05D006534 ORTHO05D006434 6.1e-06 54.3 24 95.8
BolC4t21911H Brassica oleracea HOM05D006534 ORTHO05D006434 6.1e-06 54.3 24 95.8
BraA05t19223Z Brassica rapa HOM05D006534 ORTHO05D006434 6.1e-06 54.3 24 95.8
Ciclev10029655m.g Citrus clementina HOM05D006534 ORTHO05D006434 6.1e-06 54.3 100 56.0
PSO170G0329 Papaver somniferum HOM05D006534 ORTHO05D006434 7.9e-06 53.9 99 66.7


User provided reference genes

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