Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.0e-117 426.8 221 100.0
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 9.6e-92 340.5 216 83.3
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 5.1e-77 291.6 222 73.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 9.1e-74 280.8 222 66.7
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 1.5e-73 280.0 221 71.5
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.7e-72 276.6 222 66.2
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 1.1e-66 257.3 222 64.9
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 7.0e-66 254.6 224 63.8
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 2.6e-65 252.7 237 59.1
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.6e-65 252.7 221 62.9
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.5e-65 251.9 221 62.4
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 4.5e-65 251.9 163 79.8
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 5.9e-65 251.5 225 64.9
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 7.7e-65 251.1 228 63.6
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.3e-64 250.4 238 62.2
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.3e-64 250.4 221 62.4
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 1.3e-64 250.4 229 62.0
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.7e-64 250.0 221 61.5
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-64 249.6 221 63.3
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 3.8e-64 248.8 221 62.4
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 8.5e-64 247.7 222 64.0
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 8.5e-64 247.7 221 62.9
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 1.9e-63 246.5 222 60.8
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 1.9e-63 246.5 222 63.1
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 2.5e-63 246.1 230 61.7
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 5.5e-63 245.0 215 62.8
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 9.4e-63 244.2 223 61.9
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.6e-62 243.4 222 63.5
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 1.6e-62 243.4 223 62.3
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 4.7e-62 241.9 222 62.6
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 5.2e-61 238.4 222 62.2
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.1e-60 237.3 232 62.1
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 4.4e-60 235.3 227 59.9
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.5e-60 234.6 226 61.1
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 7.5e-60 234.6 226 61.1
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 9.7e-60 234.2 155 75.5
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.7e-59 232.3 226 60.2
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 1.4e-58 230.3 229 60.3
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.4e-58 230.3 225 60.4
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.8e-58 229.9 222 59.9
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 2.4e-58 229.6 224 58.9
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 3.1e-58 229.2 226 60.2
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 4.1e-58 228.8 254 55.5
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 4.1e-58 228.8 232 56.5
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 7.0e-58 228.0 228 57.9
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 2.0e-57 226.5 274 51.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 3.5e-57 225.7 232 58.6
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 4.5e-57 225.3 224 58.0
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 4.5e-57 225.3 154 74.0
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.0e-56 224.2 218 60.6
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 1.0e-56 224.2 223 58.7
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.0e-56 224.2 228 57.9
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.7e-56 223.4 234 56.4
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 2.2e-56 223.0 228 57.0
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 2.9e-56 222.6 188 65.4
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.9e-56 222.6 222 58.1
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 3.8e-56 222.2 228 57.0
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 5.0e-56 221.9 222 57.2
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 6.5e-56 221.5 224 59.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 6.5e-56 221.5 229 56.8
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 6.5e-56 221.5 228 57.5
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 8.5e-56 221.1 167 67.1
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 8.5e-56 221.1 154 72.7
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.6e-54 216.9 227 55.9
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.1e-54 216.5 229 55.0
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.4e-53 213.8 222 55.0
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.4e-53 213.8 222 57.2
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 5.2e-53 211.8 156 71.2
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 8.8e-53 211.1 225 57.8
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 2.0e-52 209.9 154 71.4
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 2.6e-52 209.5 216 55.6
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 2.6e-52 209.5 221 54.8
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 5.7e-52 208.4 225 57.3
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 5.7e-52 208.4 229 52.8
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 2.8e-51 206.1 154 70.1
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 8.3e-51 204.5 217 55.8
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 1.1e-50 204.1 155 70.3
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 1.4e-50 203.8 163 66.9
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 1.4e-50 203.8 172 64.5
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 1.4e-50 203.8 231 51.9
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.8e-50 203.4 176 63.1
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 2.4e-50 203.0 112 93.8
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 5.4e-50 201.8 155 68.4
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 1.2e-49 200.7 178 62.9
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 2.0e-49 199.9 221 54.8
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 5.9e-49 198.4 227 54.6
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.0e-48 197.6 171 63.2
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 2.2e-48 196.4 221 52.9
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 2.2e-48 196.4 223 54.7
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 2.9e-48 196.1 145 71.7
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 8.5e-48 194.5 186 62.4
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.5e-47 193.7 221 54.8
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 2.5e-47 193.0 221 53.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 2.5e-47 193.0 224 54.0
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 2.5e-47 193.0 221 54.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 7.2e-47 191.4 223 53.4
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 1.2e-46 190.7 224 53.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 1.2e-46 190.7 221 54.3
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.6e-46 190.3 173 61.3
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 4.7e-46 188.7 157 63.7
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 4.7e-46 188.7 146 65.8
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 6.8e-45 184.9 221 50.2
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 5.7e-44 181.8 225 52.4
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 4.9e-43 178.7 224 52.7
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 8.3e-43 177.9 224 53.1
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.1e-42 177.6 224 52.7
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.1e-42 177.6 224 52.7
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 1.4e-42 177.2 224 54.0
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.8e-42 176.8 161 60.2
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 1.2e-41 174.1 224 51.8
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 4.5e-41 172.2 145 63.4
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.3e-40 170.6 153 60.1
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 3.3e-39 166.0 125 68.0
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.6e-39 165.2 154 57.8
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 1.4e-37 160.6 139 63.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 1.8e-37 160.2 181 55.8
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 1.8e-37 160.2 162 53.7
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.4e-34 149.8 152 55.3
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.0e-33 146.7 192 48.4
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.3e-32 144.1 153 53.6
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 5.0e-32 142.1 225 43.6
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 5.6e-31 138.7 166 51.8
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.2e-30 137.5 145 52.4
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 6.8e-29 131.7 113 65.5
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.7e-27 127.1 88 69.3
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 1.1e-26 124.4 95 71.6
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 2.4e-26 123.2 86 70.9
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 1.2e-25 120.9 189 38.6
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 2.7e-25 119.8 125 57.6
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 4.6e-25 119.0 78 76.9
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 7.8e-25 118.2 151 53.6
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 1.7e-24 117.1 143 45.5
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 1.5e-23 114.0 161 44.1
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 7.3e-23 111.7 156 44.9
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 3.7e-19 99.4 162 40.1
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 3.7e-19 99.4 195 40.5
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 4.9e-19 99.0 146 47.3
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 1.2e-17 94.4 140 44.3
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.1e-17 93.6 96 57.3
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 4.6e-17 92.4 94 54.3
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-16 91.3 130 39.2
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 2.3e-16 90.1 131 46.6
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 6.6e-16 88.6 132 40.2
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 4.3e-15 85.9 118 47.5
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 1.5e-12 77.4 88 46.6
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 6.4e-11 72.0 50 68.0
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-09 66.2 71 49.3
SEGI_31449 Sequoiadendron giganteum HOM05D005311 ORTHO05D006160 4.6e-09 65.9 84 53.6
MCO01G504 Micromonas commoda HOM05D005311 ORTHO05D006160 4.3e-07 59.3 155 31.0
arahy.Tifrunner.gnm1.ann1.HI4HR4 Arachis hypogaea HOM05D000211 ORTHO05D002517 9.6e-07 58.2 75 45.3
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.6e-06 56.2 38 71.1


User provided reference genes

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